Gene detail

Detailed information of HS02227 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02227	UBIQUITIN	chr3	12223573	12229421	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02227

atgcagatctttgtcaaaactctcactggcaagaccatcaccctcgaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcaactggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaacgtcaaggccaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcactctggaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccacccttcatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagacgctcaccggaaagaccatcactctggaggtcgagcccagcgacaccatcgagaatgtgaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggtaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaatgtgaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccacccttcatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagacgctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccattgagaacgtcaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtgctgcgtctgagGGGTGGGCAGTAAAGTCATTCATGATTCCATGTTCTTAAATGTAATTGATGTGCATGCATCATATGCTATACATGCCGTATTACAAAGTTGTTACACATGAAACGGTGTTCACAGTTACATGAcCAAACGTTTGCTGCACAGCACTTAATAAAGAATTAAACTCGATTTCCTTGTTTGTGTTCATTCATGGTCCATATTGGCAGAACTGAAGTTATTTGGGTAAAACGTCTTCATCCAtatggaggacttaaaatgacgagagtataaatataggaataaatgtttaaatacaggaatgaataaatataagttataactcaacaggacatcattaaatgtatttcttttatgtctacgtacttcttttatatatgcgtgacatttacgtgtccttatattcaaatgagctggggcggtcccaacctgtctaaagcatgattggtcacaggagtgtaatgcacctggtgtgttatgctctactacttctgcctggtatgttttgacttcagccggttatctattccaagtacacagagtacagactcgtgttttcttggttagtctggtcttgggagtccggactcgaggacgcaggactgtctttctggtcttgtgacgtcaccacatcgactgttcttgcgcatgaatttactccaattattcactgtaaaatactttacagtggagtagaatgtgttgcggtgttcactgtttggcgtaggctacgaataaacgttaataaatatacgtctcgtagctttcctgacccaggtcgctacaatatgaagttatgaatattaacccttagtcaacttgatgtaacgttaccttttgataaataaactctttgtgctctttagatcctccaaaacctaattatatcatgttttgccgctacggagacgtcagagccagcggagcatttcaaaaagtcctgccgagatcaggcttctctcggcggccacacagcgcgctgaccgcccggcgctgtggagctcagtggtcccgcaagcaggacctcaaatctccgtctcaaatctttatttggctgaatctcgataaactgactacagatttgatgcttaaactaataacttaccggctgaaaacatccttaaattacattccgtgactcaacaacagtagtatttagaatgtacagacaagaatgcataataaacgctgttcgtctacagatccaagtgctagggatcgattgcttctgtcttgctccctgacttgaccaatcctgtttaacaatgaggttcggaccgcccagctcatttgaatatacggacacataaatgtcacacataaataaatgaagaaatacgtgtggacacataaatagagatataaataaatgaagaaatacagaaatgtagaaatacatgtatttaatgatgtcctgttgagttataacttaaatgtattcatttatgtatttatttatttatacatgtattcttgtatttattgatttatacatttatttaagcatttatttatttattcctgtgtttatttatttatttatttaagcatttatttatttattcctgtatttattcatgcatttatttatttatttatttatacttaagtcactttaagtcctccataCTCAATGAATGAACTGCAGTATCTATAGACTTGGAGGTCAGCTTCTGAATAATAAACACTTTGGAGAGATAGAATACATTACTGTTCATGAGGATGGGGCGCCATCTACTGTCCAGAGGTTGATATGATAGAGAGGAAATGCAAAACAAAAACAAGAGGCATGATGGGTCCAAAAAGGGGTTAAAGAACCAAAATGTAGGAGAAAATGTACTAAAATCAACTAAAGAAAAAACTTGCTCTTTTGCTGGTACAAGAACGTTGGCAGCCAGGTGAAAGTAAACATGCTTTTAATAGCGAGACGGGAAGTGAAGAGACAATATCAAATATTTGGACTTGGCACATGCACATTGAATAGAACAAACAAAGACTCTTACCAAAACAGAAATTATTTTCAGCATAAGGAAACATTGACTTTGCATTAATTGTGTCCCGCCTGGAACCGATGATCGCTTGTGCTTGTGTGTTCCAAGAAAGAAAGGTGGTGGCGGGGGCTTTCTGCATTACATAAAATATGCAACATATTAATAGCAGATGTCAGTATGAATATGTACATTGTACAATGTCCTTGGTGTTGGCAGACAGAAAGTAGCCCAGTGTGCTGAGGTTGGGTGTGGACATAGCCTACATGGCCCACAAAAAAAGTTAAAGGTCAAGAAAAAATCAAGGCATGAGCAATAATCAGTGGCAGTAACATACATGTAATGCTTGTTTTCACTGTGCAGCCTAACATATACATGAGATGAATATGTCATGACCGTTGTGCATATCGAGTATAGTGGCATTGGCCCTCAGACATTAAGAATGGTTCCTACACATGGACCCACGAGAAAGGACACTATCGTCTCCAGTGATGTGGATTATGGACAGCACGAGGATTGTTCTGTGGTATTTATTTTCTAATCCCAAACGAGACTGGCTCAACACTTATCTGGATAATCTTGTGTCAACTGTTTATCCTGCCGAAGTCATTTATTGTAACTGATTTTTTCTGCTTCAGATCGCGCATCAAGATCATGAGCTCAAGATGAGgAGGAGGACGTGTGGCAAATAATTCACGAGCCACGCTCCGTGAAATGTTGACAACCACCTGCTGCTGCATCACATACCGTGTATTTCACGGAACAGCTGTATTCAGAAAACAGCAATGGGACATATATTGTGTCGTCCAAGCCTCTCGTATAATCTGTGGATAATTGACAGTGCCAGAGTTGGTCAAGTAAGTAAAATGGATAAACCCATAGAGTATGCTAGAAATGGGGACTATTTTCATGTGCGGATGAATATCACGAGATGACGTGTCTCCCGTATAAATACTCCTGTTCCCCTGGCAACTGCTCAGTCAGAAGGAAGTGTAACGAGGGACAGCTGGACAGAAAATACTGAAACTAATTGTAAGTACGATTCTTCGTGTAAGAAAAATGTAACATTTAAAGTTATGTACTGTAGTTCTTTCCATTTACATCCTCCGTAAATTTGTTGTAACCCATAATTGTGTTCGCTTTTATTTCGTAGCTATAGCGTTAACGTTAACTGACTCACTGCTTCGTAAACAGCGACGAGGCTCGCGACCTCAACAGCGCTTTTTAAAGAATAATATAGCTAATTAGCTAACGTTAATTTAGATGACGTTCATTACGAATAACGTACCGGGTGTTTTACTCTAACTATCCATCGTCGAGTATAATAATTACGCGACACACCGCTGCAAATGTGACCCAACGTTCGTAACAATGGCgCgACATTTCTAGCTGCATCTTCCATCAGCGGGGAGCGTTGGCCGAACAGAAAGAAGGCGAACAATGGCTACCTTATTTTTAAAATGGCGCTGCTGCTCGAATCAACGGCCTTCTACTAGTATGTTCATGTGATGCTCGAGAATTCAGCCCAATTGTATAGCTCGTGGTAAGCTAAAGTAATACGTGATGAGGACCCGAATGATGGCGTCTGTATACTGTATGCGACACTTAATGTATAGCTGTGACtGGAAAGAGTCTAAAACTAGATGTCAGACGGTGTCTATATAATGAGGACGCCATCATTTAATTGTAATGTAAACTGCTCAAATTGAATGTATCTGTAGAGTATATTTTCTTTTTAGCTCCAGTTCTTTAAAAAaatgttatttattaaaggttattggtaatgttgaatcttaatattTCATAGGAGCAAAcatgcagatctttgtcaagaccctcaccggcaagaccatcaccctcgaggtcgagcctagcgacaccatcgagaatgtgaaggccaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaacgtcaaggccaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcaactggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatgcagatctttgtcaaaactctcactggcaagaccatcaccctcgaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcaactggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaacgtcaaggccaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcactctggaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccacccttcatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagacgctcaccggaaagaccatcactctggaggtcgagcccagcgacaccatcgagaatgtgaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggtaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaatgtgaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaatgttaaagctaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgctggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccacccttcatcttgtcctccgtctgagaggaggcatgcagatcttcgtcaagacgctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccattgagaacgtcaaggccaaaatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcagctggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcagatcttcgtcaagaccctcaccggcaagaccatcaccctggaggtcgagcccagcgacaccatcgagaacgtcaaggccaagatccaggataaggaaggcatccccccagatcagcagaggctgatcttcgccggcaagcaactggaagatggccgcaccctgtctgactacaacatccagaaggagtccaccctccatcttgtcctgcgtctgagaggaggcatgcag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR019954	Conserved_site	Ubiquitin conserved site	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR050158	Family	Ubiquitin and ubiquitin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666	UBIQUITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019941	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386	Molecular Function	protein tag activity	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-