Gene detail

Detailed information of HS02220 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02220	GTPASE ERA	chr3	12149656	12154018	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02220

ATGGCTCTCCGGGTGTGCGGGCGGGTCTTCAGAGACTCCGCCGCCTTCTCCAGACCGGCcGTCGGCGCGTGCGCTCGACAGGACCGAGCGTCATGGCGGCTCACGGCGGGTCAGTTCCCAACGAGCTGCTCACCTCATGACATCGACCGAGCGAAGGAGTGTGTCGAGCTGCTTGTTAAGAGACCTGGGATGAATATTTAATGAACAATAAAGGGGGAGCTTGACCTTCAGCTTAGCGTGTCGAGTATATACAGTCTGGGACAAGCTGAGCGCACGCATGATGACGACATGGGAGGGGAAATGGTTGTAACCCCACACGCGCGCGCGCACACACGTGTGACTGGAGAGCGAAcGGCAGGATGGGCTTGTACCCAGCTGTCAGTCTGTGTTTGTACTGTGAGGGGGGGggACAGTAATGTAATTAATTCCAAATGGAGTTCATAGTAGAGTGTTGTTGTGTCTTGTTATATGTCTTTAAATATTCACAAGCAGGAAATTCTCTAACCGTTATGTCATTTAAAATAATATgACATTAAGAAAAGTAGCACATCCTCACATTTATGTCAAACCAAAGGACATTTATGAAATTTCTTCTTGATAAATTACTTAACTTTTTGCTCGTCGCATAATTGACAAATTATTTCAGCCGTAATTTGAACTATTGTTGCTGATAAAAATAAAACAATCGTGAATACGAGGAGCACTGTAAAGCATTAAACAGTAAAATGTCTGCGCTTCACAAAAGCATCGAGAATCCATCTGCCCGATCTTCCGGAGGGTTCTGTAATGAGTTGAATGAATGAGTTCACGAGGATCCCCGTCTGAATGCATTACTTTGCACCCGAGTGAGCGCAGTGAATCAGATAGCCTGCAGCCCCGCTGGCAGCGAAGTGATGGAGATGTTGATGTCTCTACAGGAAACGCTGCCTGCGGCCGAGGGGGGAGGACCGGATTTATCTTCACTCCCGCTTGCTTTATTACATCAGAGGCATTTCTCCACAGACTGATGAAAGGCAAAGCAGCCAAGGCAGACGGCAGTCTTTATCGCCTTCCAGCCTCAGTTCCGCCCGACAGCGGTAATCAGACCACTGCCTCCGAGATTTACATCCCCCAGATGCATCTGATCAAATTCTGTCTGTCTCCCGTTCCTCCATCTGATGTTGGAGTTGTCGTTTTTTTAATGCTGCCATATTGTGATAATTGTCTCTCCAATGATTAATTTTTGGTTGTGTGTTTTCAGGCGAGCACTTATCTTTGTTACTGAGACACCCAGATCAGCCTGAAAACTCAAAGGTTTTAAAAGTGGCCATAATTGGGGCCCCAAATGCTGGGAAGTCCGCATTGTCCAATCAGCTGCTTGGCAGAAAGGTGTGTCCCTCTCTCTTAAAGCTGCACACCTTCCATGTATCCGTGTTACTGAGGGGGGGAGGAGGTAGAGGTCACTTTGTAAAGCCACATTTTATTTCTTAAAGGTGTTTGCTGTGTCCAAGAAAGTGCACACCACGCGGTCACGAGCCCTGGGCGTCCTCACAGAGGAAGATACACAGATAGTAAGAGCTTCGCTTGTCTCTTtTGTTATAAACAAATATACAGATGTTGATACTTATGAGTGCTTTTTATAATTTTTTTGTAGATTTTACTGGATACTCCTGGTTTCACCACTGCATCAAAGGTCAAAAGGTGCTTGTCTTTTTCTTTTTTTGTGGgtgggGGGGGGGTCCATGGTGTATCAGTCAGACTGTAATACATGAATGTATCCTCTGTCTCCACAGACACCAGCTGGAGAAGACTTTGCTCGTGGATCCCTGGAACACGGTGAAAGAAGCCGACCTGAGTATGTTGGATATTCACTCTGAGCTTTTTTTATAGTCCAACATGAGCTGCGTTTCTCTTTGTTGATACCTTTGTGTGACAGATTCATTGTCAAGAGTGAAATATAGCGCTGAGTTTAAGGGCTTGTGAATAAAACTGTGCCTGTTTCCAGTGGTCGTCATGGTGGACGTGGCGGACAGATGGATGTGCAGCAGGCTGGACTTTGAGGTGCTCAAATGCCTCGCCCTGCACCCCCACATCCCCGCCATCCTGGTGCTCAATAAGGTGCTGAAGACGGGAATAAAAGGGTCGTGTTGTCGTGTCAAACAGCTGGGCGCTGTAGCTGTCAGTCTACTTGACTGATACAGGGGGGGGTAGTGGATgGGTCGGGGGGGTCCTCACCGATGCTCCTCTGTCTTTTCAGGTGGACCAGGTGAAGGCCAAAGACCGGCTGCTGGACATCACAGCACAGCTCACATGTGGAATGGTCAATGGAAAGCGAATGCACATCAGGCCGGTGATCAAGCCTCCGTGGGCCGAAAAGAGGCAAGAGAGGGATCCGGGGCCCCCGCCCGAcgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtgaggcccgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtgaggcccgaggacagcgtggggcccgaggacagcgtgaggcccgaggacagcgtgaggcccgaggacagcgtgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtgaggcccgaggacagcgtggggcccgaggacagcgtggggccGAACTCTCTGCTGAGCAAAGAGCAGCTCAGGGCACTGAAGAGCCAGCAGGGCTGGCCTCACTTTAAGGACATCTTCATGCTTTGCGCTGTGGACAGTGAAGACGTGGAGACGCTGAAGGTACACGTTATAGATATGTTCATCGTAGCCCAAAGCCCCATGGCCCCATGTATTATACCTCTTATAATGACCGATAAAAGAACAGAACTCGGTACATTACATTTATATTTGAAGCTGAGCATTTGTTAGTCTCATTTATAATTTTTATCAGTTGGTTTTAGTTTTTTCTTTTTGATGTGACGCCAATAACTCTACTTTTCACCTTGCTTCCCTAGAAATACTTAATGGCCGGGGCCAGACCAGGACCGTGGCAGTACCACAGCGAGGTCCTGACTGACCAGGGTCCAGAGGAATTGTGCACCAACATCATCAGGGAGAAGCTGCTGGAGTATCTGCCCCAGGAGGTGCCCTATTCCATTACACAGGTGAACCAGCTTCTTTTGCGGGGACACTCCGTAAGTCGGGCGTGGTGATAAGCTGACAGCTGACTGGCTCCGCCCACCACATCTCTCCACACTGACTGCGCGGCTTATCTCATGCCCTTCACGCTCGCTTTCACTCCCCATGCTGACATGCGTTTTGATGCAGCTTTTGGCGTCAGCCTCCACCCGCTACACTCGTGCTCTTCTTTTGGTATTTTTACTCCTCAATTATCTTTCTGTATTAACTGCGACTGCAGATTCACACCATCAAGTCAAACTCATCCCAGTCGGGCTCAACTGGAGGTCATCTTTTATGCACGTGCAAAGAACTCTGGGATATGAAGTGGTGGTCACTGCTCTGAGCCAGTGACAGCTGACGTTTTTTAAACTTTTTGTAGAAGTTTAATATTTGAATGTTTCCGTTTCAGGCGATTGAACTCTGGCAAGATGGAGAAGACAGCGAGCTGAATATCTCTGTGAAACTTTATGCCAAGAAAGCCACTCACATGGTACGGTCCATCAGGACACTCACATTCATGTTTTCTCCTGTCCGTAAATCAGGTGGAACACAAACAAAACTACTGCGTATGAAATACATGTTTGATTTGTGGCAGTCACAGGAAAGGAGGACGTGGAAATCTTTCCCTCCACCTGCAGCCTCTGAAGGGTTCTAATAGTTATTTGCCGTTCCCCCCATAGCTCCACATTCCTCCACATTTATTTTCCACTTTTTGTTTTTAACTAAATATTTGAGCAGCCTTTCTAAACCATACATATTTGATGGCAAAGAATATTGTGTGCTACTTCTGTGGGGCTGAAATATTTGATTcTCGGTCCATCCTTTTGCAGAAATGACTCAAGAAAAATAGATCGGGCAGaGGGAAGTTGTAGTCCAGTTTGTGTCATCTTTTAGCACAAAAGCCTCAGTGATGCGTTAAAGTAGTTTATCAAGATTTAAATATATTGTCAGAATTAGAAAGTGTCTTTTATCGAAAATGGTAATGATTCCTCTGGTCCCGTCTATCTGCTGCTGGCTGATGTATTCCTTGTGTCTACAGGGGATGGTGATCGGCCCGGCCGGCCAGATGGTGGCGCGCATCGCCCGAGAGGCGGGCGAGGACCTGAGCCATGTGTTCCGGACGGAAGTTAGGCTGAAGCTCTCCGTCAAGCTGAGGAAGATGGCTCTCCGGGTGTGCGGGCGGGTCTTCAGAGACTCCGCCGCCTTCTCCAGACCGGCcGTCGGCGCGTGCGCTCGACAGGACCGAGCGTCATGGCGGCTCACGGCGGGAAACGCTGCCTGCGGCCGAGGGGGGAGGACCGGATTTATCTTCACTCCCGCTTGCTTTATTACATCAGAGGCATTTCTCCACAGACTGATGAAAGGCAAAGCAGCCAAGGCAGACGGCAGTCTTTATCGCCTTCCAGCCTCAGTTCCGCCCGACAGCGGCGAGCACTTATCTTTGTTACTGAGACACCCAGATCAGCCTGAAAACTCAAAGGTTTTAAAAGTGGCCATAATTGGGGCCCCAAATGCTGGGAAGTCCGCATTGTCCAATCAGCTGCTTGGCAGAAAGGTGTTTGCTGTGTCCAAGAAAGTGCACACCACGCGGTCACGAGCCCTGGGCGTCCTCACAGAGGAAGATACACAGATAATTTTACTGGATACTCCTGGTTTCACCACTGCATCAAAGGTCAAAAGACACCAGCTGGAGAAGACTTTGCTCGTGGATCCCTGGAACACGGTGAAAGAAGCCGACCTGATGGTCGTCATGGTGGACGTGGCGGACAGATGGATGTGCAGCAGGCTGGACTTTGAGGTGCTCAAATGCCTCGCCCTGCACCCCCACATCCCCGCCATCCTGGTGCTCAATAAGGTGGACCAGGTGAAGGCCAAAGACCGGCTGCTGGACATCACAGCACAGCTCACATGTGGAATGGTCAATGGAAAGCGAATGCACATCAGGCCGGTGATCAAGCCTCCGTGGGCCGAAAAGAGGCAAGAGAGGGATCCGGGGCCCCCGCCCGAcgaggacagcgtggggcccgaggacagcgtggggcccgaggaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtggggcccgaggacagcgtgaggcccgaggacagcgtggggcccgaggacagcgtggggccGAACTCTCTGCTGAGCAAAGAGCAGCTCAGGGCACTGAAGAGCCAGCAGGGCTGGCCTCACTTTAAGGACATCTTCATGCTTTGCGCTGTGGACAGTGAAGACGTGGAGACGCTGAAGAAATACTTAATGGCCGGGGCCAGACCAGGACCGTGGCAGTACCACAGCGAGGTCCTGACTGACCAGGGTCCAGAGGAATTGTGCACCAACATCATCAGGGAGAAGCTGCTGGAGTATCTGCCCCAGGAGGTGCCCTATTCCATTACACAGGCGATTGAACTCTGGCAAGATGGAGAAGACAGCGAGCTGAATATCTCTGTGAAACTTTATGCCAAGAAAGCCACTCACATGGGGATGGTGATCGGCCCGGCCGGCCAGATGGTGGCGCGCATCGCCCGAGAGGCGGGCGAGGACCTGAGCCATGTGTTCCGGACGGAAGTTAGGCTGAAGCTCTCCGTCAAGCTGAGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF07650	KH_2	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004044	Domain	K Homology domain, type 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR005662	Family	GTPase Era	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR009019	Homologous_superfamily	K homology domain superfamily, prokaryotic type	Interproscan
IPR015946	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030388	Domain	Era-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42698	GTPASE ERA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-