Gene detail

Detailed information of HS02093 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02093	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	chr3	9061868	9067224	-

Gene Structure

More details in Jbrowse Sequence

CDS

HS02093

Transcript

HS02093

ATGTCGAACGAACGCACCCCTCTGGTGCCCTCGGGGGTCTGTGGTCTGGCGGTGGCATGCGGCGTGGAGTTGGACGCCACTGACCCAAGCAAAGACCCTCGAAAACTAAACACTTTTTTCGGGGTGATGGTGCCCACCATCCTCTCCATGTTCAGCATCGTGCTGTTCCTGAGAACCGGTGAGTGTGAAGAGATCGGACAACCCGAGAGCTGTTTTTGGTTGTCGACGGTGGGAGTTGTCATGAAtCcTCCCGATACAACCGAGTCATTGTGCTGTGCAGTCGTGACTAACACTGATGGGATCTCTCTTGCAGGGTTTGTGGTTGGTCACGCGGGGCTGTTGCAGGGTCTTCTGATGGTGACCGTAGCCTACACCATTATCTCTCTCACAATACTTTCCATCTGTGCCATTTCCACCAACGGTGCTATACAAGGGGGAGGAGCCTACTGTATCCTCAGATCAAACTGTtGTTTCCCTCACGGTGCTGCTTGATTTTGCCATTATATTTTGAAACATTACAGCCTTAACTAAATGTGACCAGACATGATAAGTCGGTCCCTGGGCCCAGAGTTTGGAGGAAGCATTGGTTTGATGTTCTTCCTGGCCAAAGTGTTTGCGTGTGGAGAGTATGTTCTTGGTCTTGTGGAGGCCTTACTTGATGTGTTTGGTTCAGATCCTGGTAAGTGTTTGGTTTATATTCAGATTTGTAGTTAACTAAACCACCTACTTCAGTCGTACACATCCCTTTCTAGTCTCTAGGATTCTGAGTTTTCTTCTTGCTCTGTCGTAGAGTCCTCTGTGTCCGAGGGGATGCGTGTGCTTCCACAGGGCTACTGGTACTCGGTGCTCTACTCCTCCGTGGTCCTgCTGCTGTGTCTGCTCGTGTGTCTGGTGGGCGCCCACATCTACTCCCGCACCGCCTTCGTCATCCTGCTGGTGGTCACCGTAACCTTGCTGTCCATCTTAGTCAGCTCCGTGCTcGTCAAACCTCGTGATTTTGTCATCGCCCACAAGGGGTCCGACAACCAGACCGCCCGCTACAACGCCAGCTACACGGGCTTCAACGCCACCACTCTGAGGAACAACCTGGGCTGTGAGTGTTTGGGGCTTGATGTTGGTGGGAGGGAGAGGATCTGAAAGTACGTTGGGGCTTTTGGGCCTTCTATTTCAGGTCTCGCTATTGtTGGTTAtTTTTCTCATTGCAGCTGGTTACTCTTTGGACTACAGCACCGACTCCGTCATGTCTTTCGCCACCGTGTTCGCTGTCATGTTCACCAGCTGCACCGGGATTATGGCCGGAGCCAACATGTCAGGTTAAAGCTTGTTGTCTTGCGTGTATAATCACTTTGAAATGAAGTTGTGTCATTGTAGGAGGTGGACtgtaactggactatttgtaactagactatttgCCATTGCTACTTTTTCCTTATTTTAAATAAATATGCATGTCATTATGCCGAATATTGTCAATTGAGAGATTTGTTTAAATACACATAGCAATTCAATAAATCTGTATTCCACACACACCCTGATGTTTGCTCCCGCTaCGCATGTCTCTGAAGGGGAGCTGAAGACTCCGAGTGTTTCCATCCCCAAAGGCACCATCGTCGCCGTCTTTTACACGTTCGCAGTCTACGTCCTCCTCTTCATCCTGGTCAGCGCCACGTGTGACAGGTCTGAACTGGTTCACGATGTCTGATAGGAATACTTAAAGAGAGATCAACAATATAAAGTCATTTGTTTCTTTTTCTCTAGGACCCTGTTGATTCAGGATTATGGGTTCCTCCAGAGGATAAACATCTGGTCGCCATTGGTCACCGTGGGGATATTCTGCGCCGCTCTTTCAGCTGCGATGTGCGCTATGATCGGAGCGTCCCGTATCCTCCATGCTCTGGCTCTGGATCAGCTCTTTGGTACGTCTTGATGTTTTTGCCTCATCATGTCGGTGTCCTTTACACTCGTTTCCTAACAGACGGTTGTTTCCCCCTCACAGGTTTGCCGTTAGCCCCAGCGACAATCACATCGAGCTCGGGGAATCCGTGGGTGGCTGTGCTGTACACCTGGGCTTTGGCACAGGTGAGCAGAGCTTCTGTCGCATGCAGTTCCATATTTCCCAAATTACAACAGgtgttctgagcgtgtgtgtctgtgttttagtgtgtagtgtttgCAGGCCAGCTCAATGCCGTGGCAGGTTTGGTGACTGTTTTCTACCTGCTTGCCTACGCTGCGGTTGACCTGGCCTGTTTGGCTCTTGAGTGGGCGTCGGCACCCAATTTCAGGTAATAAACAGTAAAATCGCTATTAATATGAAAAATAATAAATCAGTAGGCATTGCCATCATATTTTTCATCAATGTGGAATTGAAGTCAATACAAATGCATTTAATAAGAATGTACAAAAAAAAaAAATatTGAGTGGCCAATGAAGTAAGATCATGAATCTAAAAttgctcagtgacacaaaaGCGAAAaATGTAAGCTACTTTTTTTAAAGGTGTCGTCTTTCAGAGAGAACGGGCTCAAAAATGTAGATTACAAtAACAATTTATaTTTAAAACTCAATTGACCTAACTTGGATTTATTACTATCgTATCATTTATGAGACAATAAATTCTTATTCATTGTCTTCTGTTTTTAATGTGTCCGACGGCCTCTATTCTTtgtctctgtttgtgtgtgtgtgtgtgtTTAACAGACCAACCTTCCAGCTCTTCTCCTGGCACACCTGCCTGCTGGGCATCCTGAGCTGTTTAGTGATGATGTTCGTCATTAACCCCGTGTACTCCTCAGGCAGTATCGTCCTCCTGCTAGTGCTGCTGCTTTTCCTTCACTACAGAGCaCCCACCAGCAGCTGGGGCTAtGTCAGCCAGGCTCTAATTTTCCATCAGGTATCTGGACTCATGCAGAtaCGCACACGCACACACATAAACAGACAGTGCCACAGTGTGCCAACAATGCCTTTTTCTTTAGGTGCGTAAGTATCTGTTGATGCTGGATGTGAGAAAAGACCACGTGAAGTTCTGGAGGCCGCAGATGTTGTTGATGGTGGCCAACCCTCGCTCCTCCTGTCAGCTCATCCTGTTCATCAACCAGCTGAAGAAGGGAGGACTCTACGTGTTGGGCCATGTGCAGCTGGGGGATCTTGGTAATTCCCTGTGGTTGCTATGTGATGGTCATCCCCAGCTAACAGTATTACATTAATCTTATCTCTGAATCATTTTCGAAGCCATGTGAAACTCACCTTCTGGCCTgTTCgTGCATCTGGAGGCCAGTCACTGATGTGTTCCAgCAACATGATTAGTTCTCTTTCTTTCTGAGAGCACAAGCaGAGCAGAGAAAGTGGGAGTAGGTTGCAAATGACTGAAGTTGTGTAACGGATCCAATTGGCTTTCCTGAAGTCACAGGCACCGTCATGGAAGATGACCTtGTGAGCTATCGCTTCCcATCTGCTGCTTCTCCTGCATTATTAATACGATAGGAAGTGTCCTCTGTATCATTGTTGCATCAGATCTGAGAATTCAAACCAGAcAGCCTTTCATTCGGCCACATGTCTGGGTCCTTGTTTGTTGaGCTAAATAGGCAAATATAATTTTTATATTGTAAGATAATATATTGTGTgGTGCAACCCAAGGaATCAGAAAGCAAGGTGtTGACCGGTTCTTTCATTAAATCACTGACAATGCAATTcGTTAACAGCAACGCTGCAATAAGTTTAAATTTGAGTTACAATTtGGTGGAAAGTATAGTATGTATTgACTTAACTAtTTGTTTTACAGCTACTTTTAAGATTAAATCGTACCTTTTTTTcGcGTTTGGTCGCTTCCAAAGAAAATTAACCAATCACTTGATCAAACTTtAGTTAAtCAACcGCTCGATCCACTGGACCAGACTAAAaGTaTTCTTTTGTATAAAgTCAACCAGCTACAACAGTGAAATGCTACTTATGCACTGATATACCtCTATTAATAATGTGATGATAAAAATATATCAGCACAAGTGCTATTAcTTTAtGTAaATtTAACTAAAGTGAAGATGATCAAATTAACATATaCTTGAACTTTTCAGATATTTCAATGCAGGACTATTTATTTTTGCAGTTTTTATACATTtTTATATGTTTACCGTTTTACTTCAATGAAGAACCTGAGAACTTCATCCACCAACATTCTGCTGAAATGTCTTCAGTCGTGTTTACTCTATAAAATCAAGCCCTGTGTTGaAAGTCCTGTGGACTCTTCAAATCTATGAATACTTGTAATTTCTTACCAATCCTGCTTGTGTTCTAGACTCTCTGCCAACAGACCCGGTTCAGCAGCAGTACAACTTCTGGTTGAGCCTCGTCGATAAACTCGGGGTGAAGGCCTTCGTGGACTTGACGCTGTCGCCCTCCGTCAGACAGGGAACACAGCACCTGCTGCGCATCACAGGCCTCGGTACGCTCTCCTCTCCCTCATCCCGCCGACATTCAGTACAGACGACCATGTCGCTTCATCgCCTTGTTTCCCTCTTCAAGGTGGCATGAAGCCCAACACACTGATTTTGGGTTTCTACGACGGCTGCACCCCCGAGGACTTCTTCCTCCAGGATTCTGCGTTCTGCGACTCCTCaCTTGGACAAGGGCGCGAGGGCGAATATAATTTTGGGGTCGACTTGCCTTCGTTGCAGGCCCATTTCCCACCaGTCCGACATGTGGAGAACCCTCGCTGGCTGTCGCCGGAGGAGTACGTGGGGATCATTTCCGACGCCATTAAAATGAACAAGAACGTGTGCCTCGCCCGCTATTTCTTCCAGTTGGAGGGCGAGGGGAAAGAcAGCAAGGTGGACGGGTCGGAGCGGACGATCGACGTGTGGCCCCTCAACCTGCTGCAGCCCGGCAGCCGGGACTACGAGGACGTGTGCAGCCTGTTCCTGCTGCAGATGGCCTGCGTGCTCAACATGTCCAACAAATGGCGGCACGCAAGAATGCGAATCTTCCTGAACGTGGAGACGGAGTCCAGCGACCAGGGCTGGGTGGTGAACGAGGAGACGTTCCGAGAGCTGCTCGGGAAGCTGAGGATCAGGGCGTCGATAAAGATCGTGCCCTGGGACTCCGTGGTGCAGCACCACGTGCCGCCGAGCGGGGAGCCCCAAGCGGAGCCGGCGCCGGCTCTCTCCGAGGAGTTCCTGTCCGCGGTGAACAGCATGCTGGTGGAGCACAGCGCTCAGGCCGCCGTGCGCTTCCTGTACTTGCCGCGACCCGCCgctcGGCGCGGCGcGGaGCAGCAGTACTTGGCTCGGGTGGAAGCGGTGACCAATAGCTTGGGGCCGACGCTCCTGATTCACGGGGTCACCCCAGTCACGTCCACTGATCTGATGTCGAACGAACGCACCCCTCTGGTGCCCTCGGGGGTCTGTGGTCTGGCGGTGGCATGCGGCGTGGAGTTGGACGCCACTGACCCAAGCAAAGACCCTCGAAAACTAAACACTTTTTTCGGGGTGATGGTGCCCACCATCCTCTCCATGTTCAGCATCGTGCTGTTCCTGAGAACCGGGTTTGTGGTTGGTCACGCGGGGCTGTTGCAGGGTCTTCTGATGGTGACCGTAGCCTACACCATTATCTCTCTCACAATACTTTCCATCTGTGCCATTTCCACCAACGGTGCTATACAAGGGGGAGGAGCCTACTACATGATAAGTCGGTCCCTGGGCCCAGAGTTTGGAGGAAGCATTGGTTTGATGTTCTTCCTGGCCAAAGTGTTTGCGTGTGGAGAGTATGTTCTTGGTCTTGTGGAGGCCTTACTTGATGTGTTTGGTTCAGATCCTGAGTCCTCTGTGTCCGAGGGGATGCGTGTGCTTCCACAGGGCTACTGGTACTCGGTGCTCTACTCCTCCGTGGTCCTgCTGCTGTGTCTGCTCGTGTGTCTGGTGGGCGCCCACATCTACTCCCGCACCGCCTTCGTCATCCTGCTGGTGGTCACCGTAACCTTGCTGTCCATCTTAGTCAGCTCCGTGCTcGTCAAACCTCGTGATTTTGTCATCGCCCACAAGGGGTCCGACAACCAGACCGCCCGCTACAACGCCAGCTACACGGGCTTCAACGCCACCACTCTGAGGAACAACCTGGGCTCTGGTTACTCTTTGGACTACAGCACCGACTCCGTCATGTCTTTCGCCACCGTGTTCGCTGTCATGTTCACCAGCTGCACCGGGATTATGGCCGGAGCCAACATGTCAGGGGAGCTGAAGACTCCGAGTGTTTCCATCCCCAAAGGCACCATCGTCGCCGTCTTTTACACGTTCGCAGTCTACGTCCTCCTCTTCATCCTGGTCAGCGCCACGTGTGACAGGACCCTGTTGATTCAGGATTATGGGTTCCTCCAGAGGATAAACATCTGGTCGCCATTGGTCACCGTGGGGATATTCTGCGCCGCTCTTTCAGCTGCGATGTGCGCTATGATCGGAGCGTCCCGTATCCTCCATGCTCTGGCTCTGGATCAGCTCTTTGGTTTGCCGTTAGCCCCAGCGACAATCACATCGAGCTCGGGGAATCCGTGGGTGGCTGTGCTGTACACCTGGGCTTTGGCACAGtgtgtagtgtttgCAGGCCAGCTCAATGCCGTGGCAGGTTTGGTGACTGTTTTCTACCTGCTTGCCTACGCTGCGGTTGACCTGGCCTGTTTGGCTCTTGAGTGGGCGTCGGCACCCAATTTCAGACCAACCTTCCAGCTCTTCTCCTGGCACACCTGCCTGCTGGGCATCCTGAGCTGTTTAGTGATGATGTTCGTCATTAACCCCGTGTACTCCTCAGGCAGTATCGTCCTCCTGCTAGTGCTGCTGCTTTTCCTTCACTACAGAGCaCCCACCAGCAGCTGGGGCTAtGTCAGCCAGGCTCTAATTTTCCATCAGGTGCGTAAGTATCTGTTGATGCTGGATGTGAGAAAAGACCACGTGAAGTTCTGGAGGCCGCAGATGTTGTTGATGGTGGCCAACCCTCGCTCCTCCTGTCAGCTCATCCTGTTCATCAACCAGCTGAAGAAGGGAGGACTCTACGTGTTGGGCCATGTGCAGCTGGGGGATCTTGACTCTCTGCCAACAGACCCGGTTCAGCAGCAGTACAACTTCTGGTTGAGCCTCGTCGATAAACTCGGGGTGAAGGCCTTCGTGGACTTGACGCTGTCGCCCTCCGTCAGACAGGGAACACAGCACCTGCTGCGCATCACAGGCCTCGGTGGCATGAAGCCCAACACACTGATTTTGGGTTTCTACGACGGCTGCACCCCCGAGGACTTCTTCCTCCAGGATTCTGCGTTCTGCGACTCCTCaCTTGGACAAGGGCGCGAGGGCGAATATAATTTTGGGGTCGACTTGCCTTCGTTGCAGGCCCATTTCCCACCaGTCCGACATGTGGAGAACCCTCGCTGGCTGTCGCCGGAGGAGTACGTGGGGATCATTTCCGACGCCATTAAAATGAACAAGAACGTGTGCCTCGCCCGCTATTTCTTCCAGTTGGAGGGCGAGGGGAAAGAcAGCAAGGTGGACGGGTCGGAGCGGACGATCGACGTGTGGCCCCTCAACCTGCTGCAGCCCGGCAGCCGGGACTACGAGGACGTGTGCAGCCTGTTCCTGCTGCAGATGGCCTGCGTGCTCAACATGTCCAACAAATGGCGGCACGCAAGAATGCGAATCTTCCTGAACGTGGAGACGGAGTCCAGCGACCAGGGCTGGGTGGTGAACGAGGAGACGTTCCGAGAGCTGCTCGGGAAGCTGAGGATCAGGGCGTCGATAAAGATCGTGCCCTGGGACTCCGTGGTGCAGCACCACGTGCCGCCGAGCGGGGAGCCCCAAGCGGAGCCGGCGCCGGCTCTCTCCGAGGAGTTCCTGTCCGCGGTGAACAGCATGCTGGTGGAGCACAGCGCTCAGGCCGCCGTGCGCTTCCTGTACTTGCCGCGACCCGCCgctcGGCGCGGCGcGGaGCAGCAGTACTTGGCTCGGGTGGAAGCGGTGACCAATAGCTTGGGGCCGACGCTCCTGATTCACGGGGTCACCCCAGTCACGTCCACTGATCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00324	AA_permease	Amino acid permease	Domain	Interproscan
PF03522	SLC12	Solute carrier family 12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004841	Domain	Amino acid permease/ SLC12A domain	Interproscan
IPR004842	Family	SLC12A transporter family	Interproscan
IPR018491	Domain	SLC12A transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11827	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0006884	Biological Process	cell volume homeostasis	Interproscan
GO:0015377	Molecular Function	chloride:monoatomic cation symporter activity	Interproscan
GO:0015379	Molecular Function	potassium:chloride symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055064	Biological Process	chloride ion homeostasis	Interproscan
GO:0055075	Biological Process	potassium ion homeostasis	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:1902476	Biological Process	chloride transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-