Gene detail

Detailed information of HS02072 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS02072	ACTIVATING TRANSCRIPTION FACTOR ATF 4/5	chr3	8728633	8730553	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS02072

ATGATGGCAACATCAGCTCCTGTTTGGAAGAGTCTTCGTGTCTACCCGGCAGACCCCCTCGCTCACTCTCACCCACAGGCTAGCCACAGCCAATCACAGGGGTGCAGGGGGGAGGTGTCAGAGGAGAGTCAGCACTTAATTGGTGAGTTGCAGCGAGTACGCTTTTTTATATTTTTCCCCATTTCAGGTGGGCTCGGCACTGCAGCACATTCGTCCTTCCTGAACAGTAAGTATAAAACTAGCTAtGCCTAATATGTTGATACGCTACAACTATAGTTTAAAAAAATCTTACTTTTGCTTTTCCTATTGTCAATCAGATTTTGCCTTTAGGAAACCGCTTTGTGCAATGTTGGATGACTGGAATTTTTCTAACGTTTTCATGAACATTGTTATTTGATTGCAATGCTTTCCTCCAACTAACAGCAAGTCACGATTGCATTTTCTCTCTCTCtTCAATAGGTGATGGTCTCACTGACTGGATGACGGAAGAAGTGGATTTCTCCTCGTACCTCCCAAACCCTCCTTCCCCTCCCTCCTCCACCAATGCCTCCCTTCCCCCTTCGCCCCTTCAGAATGATATCCATGTGCCCTCCGATTTGGAGGTCATGACCTCTCTGCTGCAAGAGGAACTTGCCCAACTAGAGGACTACTTCCTGTCCGAGCCGCTGCCAGAGAAAGGGCCGAGGCTCGGAAAATGCGACAGGGGTCCACTGCCGGCGGGTCCCCAGCCGTTCAGTCAGCTGCCATATGCATCATACTCCACATCCAACCAATCGGAATCCAGCCCACTCCTTGTTACCCTGGCAACCGGAGAACTGGACCTGCTGAGTATCTGTGGCGGGCCCATTGGGCGATCCAAAATTCCAAGACACGCCCCGTACAGCTGCAGTCTCCCCAGTGGGTGTGTTAGGAAAAGAGTTCCTGACGGTGTGAGGTTCGGTGAAGGCTATGACAACAGTTTGTTGAGTTCCAAAGTAAGTCACTCAGGTAACGCAGCGGTGACCCTCCCAGGTAGCTATGACTGTGTCGAGGACCAGCAGCTGGTCGGAAAAAGCTACTGTCTGGGTAGTGCAGTCGAGGTCAGAAGATGTGCCGTTCTACCGAAAGACGACAACAATTGCTGTTTCAGTCAAGATGTCATGGGTGGTGCGAAGGTTGTCGGTGGTGGATTTGGCTTTGGTGGGTCACTTAACCTCCCGCACAAGAAAGAGGATCTGCTGATGTATAGCATGAGGGAGGTCAGCGGCGGCACTGGGAGCAACGAGGTGCTCAATAGTATCAAAACAGTGGAGATGACAAAAGCCTCCGTGTCGTGGAAAACAGAGAGCGGCGAGGGTTGTTATCTTCCGTCAACAGCTCAGTCTGAGGCCTACCACAGCTTCTTCAGCAACATCAACGAACAGGTGAAATCAGAGAGTCTACAGATAGGGCAGCATGATTTGCACTGTAATTTCCTGGAGGATCAGGGCCCAGAGTGTCTTTTAATGGCGAGGGAGAGTCTGAACTtGGAGCCCTCAGGGCACAGACAAGCATGCAGGCTGAAGGAAGACCACTGTGATTTGAATTGCGAAGAGGACCTCATCCCGGCTGAAGGCGGGAAGCGCAAACAGAAGAAGAGAGATCAGAACAAAACTGCCGCTCACAGGTAACCTTTTAGTTTCCGCTTGATTTAAAGGTATTTAACCGTCGCCGTGAtTTCACAGGTTTTGCATTTAATCTTTGTTTTCCTTAATGCAGGTACCGCCAGAGAAAAAGGGTGGAGCTGGATACTCTGGAGGAGCAGTTGCATGGCCTTGAAGGGAAGAACCGGGAGCTCCGGGACAAGGCAGAGTCGGTAGAACGTGAAATCCAGTACGTCAAAGACCTGCTGATTGAGGTTTACAAGGCCCGCAGCCAAAGGCTCAAGCAGGACACgACAGCGATGATGGCAACATCAGCTCCTGTTTGGAAGAGTCTTCGTGTCTACCCGGCAGACCCCCTCGCTCACTCTCACCCACAGGCTAGCCACAGCCAATCACAGGGGTGCAGGGGGGAGGTGTCAGAGGAGAGTCAGCACTTAATTGGTGAGTTGCAGCGAGTACGCTTTTTTATATTTTTCCCCATTTCAGGTGGGCTCGGCACTGCAGCACATTCGTCCTTCCTGAACAGTGATGGTCTCACTGACTGGATGACGGAAGAAGTGGATTTCTCCTCGTACCTCCCAAACCCTCCTTCCCCTCCCTCCTCCACCAATGCCTCCCTTCCCCCTTCGCCCCTTCAGAATGATATCCATGTGCCCTCCGATTTGGAGGTCATGACCTCTCTGCTGCAAGAGGAACTTGCCCAACTAGAGGACTACTTCCTGTCCGAGCCGCTGCCAGAGAAAGGGCCGAGGCTCGGAAAATGCGACAGGGGTCCACTGCCGGCGGGTCCCCAGCCGTTCAGTCAGCTGCCATATGCATCATACTCCACATCCAACCAATCGGAATCCAGCCCACTCCTTGTTACCCTGGCAACCGGAGAACTGGACCTGCTGAGTATCTGTGGCGGGCCCATTGGGCGATCCAAAATTCCAAGACACGCCCCGTACAGCTGCAGTCTCCCCAGTGGGTGTGTTAGGAAAAGAGTTCCTGACGGTGTGAGGTTCGGTGAAGGCTATGACAACAGTTTGTTGAGTTCCAAAGTAAGTCACTCAGGTAACGCAGCGGTGACCCTCCCAGGTAGCTATGACTGTGTCGAGGACCAGCAGCTGGTCGGAAAAAGCTACTGTCTGGGTAGTGCAGTCGAGGTCAGAAGATGTGCCGTTCTACCGAAAGACGACAACAATTGCTGTTTCAGTCAAGATGTCATGGGTGGTGCGAAGGTTGTCGGTGGTGGATTTGGCTTTGGTGGGTCACTTAACCTCCCGCACAAGAAAGAGGATCTGCTGATGTATAGCATGAGGGAGGTCAGCGGCGGCACTGGGAGCAACGAGGTGCTCAATAGTATCAAAACAGTGGAGATGACAAAAGCCTCCGTGTCGTGGAAAACAGAGAGCGGCGAGGGTTGTTATCTTCCGTCAACAGCTCAGTCTGAGGCCTACCACAGCTTCTTCAGCAACATCAACGAACAGGTGAAATCAGAGAGTCTACAGATAGGGCAGCATGATTTGCACTGTAATTTCCTGGAGGATCAGGGCCCAGAGTGTCTTTTAATGGCGAGGGAGAGTCTGAACTtGGAGCCCTCAGGGCACAGACAAGCATGCAGGCTGAAGGAAGACCACTGTGATTTGAATTGCGAAGAGGACCTCATCCCGGCTGAAGGCGGGAAGCGCAAACAGAAGAAGAGAGATCAGAACAAAACTGCCGCTCACAGGTACCGCCAGAGAAAAAGGGTGGAGCTGGATACTCTGGAGGAGCAGTTGCATGGCCTTGAAGGGAAGAACCGGGAGCTCCGGGACAAGGCAGAGTCGGTAGAACGTGAAATCCAGTACGTCAAAGACCTGCTGATTGAGGTTTACAAGGCCCGCAGCCAAAGGCTCAAGCAGGACACgACAGCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827	Domain	Basic-leucine zipper domain	Interproscan
IPR046347	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13044	ACTIVATING TRANSCRIPTION FACTOR ATF 4/5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-