Detailed information of HS01484 in Pseudoliparis swirei Gene info
Gene IDAnnotationChromosomeStartEndStrand
HS01484DNA-BINDING PROTEIN SATB FAMILY MEMBERchr21850823118562826+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF02376CUTCUT domainDomainInterproscan
PF16534ULDUbiquitin-like oligomerisation domain of SATBDomainInterproscan
PF16557CUTLCUT1-like DNA-binding domain of SATBDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR003350DomainCUT domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR010982Homologous_superfamilyLambda repressor-like, DNA-binding domain superfamilyInterproscan
IPR032355DomainSATB, CUT1-like DNA-binding domainInterproscan
IPR032392DomainSATB, ubiquitin-like oligomerisation domainInterproscan
IPR038216Homologous_superfamilySATB, CUTL domain superfamilyInterproscan
IPR038224Homologous_superfamilySATB, ULD domain superfamilyInterproscan
IPR039673FamilyDNA-binding protein SATB1/SATB2Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR15116DNA-BINDING PROTEIN SATB FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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