Gene detail

Detailed information of HS01465 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS01465	NORRIN	chr2	17837981	17841008	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS01465

GGCctgctgctggtcctgatgtgctgcccgctgctgGGCTTGGTCCGGTCCGCCAGCAGCAACAAGGCCAGCGATAAGGGACACCCACACCTGGGAGAAGCCGACCCGGAGCGCTGCATGAGGCACCACTTCGTGGAGACCATCGTGCACCCGATCTACAAGTGCAACTCCAAGGTGAGGCCTTCTTTTTGGTAGCGAGTCGTTTAAGACGAGTTAAGTCATTTGTTATTGGAGACAATTTGTTTTGAAAAGCAATGCCTCGGAGACACGAGGAAAACCCACAGAGCGCCGGGCAAAGACTAAACCCCCCCCCCCCCGCAAAACGCCAAACTCAATTAGTCTCACACACATTTCTCTTTCCACCAGCGTTACTCTTGTTGCCCCTCAAACGCCTCCTCCATTCAGCCATCGCCTCCTCTCACATTATCTCCACCTCTCCTTCATTTAGACGGGACTCGCCTCGTTTCTCAgtgtgtgtgtgtgtgtgtgtgtgtgGTGCTGGACGCGGGCCACGCTGCAGTCATATTCTGCTCCTCAGCTGGGAAGCCCATTTGGCTGAAGCGGACGTCTCCCCGTCAGCCGGCTCTCTCTCCGGCCTCCGCTCGTCTTTCTGGAGAGAGAAAAAGAAAAGTTAGCTCGTGGTCCGAAGGCGGCGCGCGGCATTTTTaTTTTTTCCTTCTCTCCATAAAGTGCCGGACGACTCATCCACTCGACGACCCGTCGACTCGCGTGACTGTCGAATGTGTGACCCTAAGCCTTATGCTGCAGCGAGCGCGAGCAGCCCGGTTCTTTGGTCTTTTTTAAATATTCGGACTATTCTGAGTGCCGAGCAGGTGGCCAAACCACAGCCCGCTCGGGGAAGTCAGGCCTGAACTCACTCACAGCATGAGCCACGCTTTACAGTACCCAGAGCACGGGGCTCCTGTTTCACCTCAgtatgtgtgtgtgtgtgtgGGGGGGGGTCTCAACTCAGACAATATTTGTATCGACGACATGAGTTCCAGAACGGaaagcgttgcattaaatatattacttcagtaaaagtacaaaagaagaaaaaaaagaaaaaatgttaaattccaaagaagcactcactgtgcgtatttaagaatagtgaatgttatataatactattggatcacaattattgattctattattgtgttgcattattgttgcagccagtcacggtcaggctgatccaactttatataccgcatgggtagtttaacctgtaacagtaaaatcattgatatgagatgattcatatgttgtattaaTAATTTTAAATGTGTGGATTATAATATCAAATAAATGCAGTGAAGTAAAAAGTATATTTTCTTCCTGAAGAAAGTAGCATAAATATAATAATAATACAGTAATAACTGTACTTAAATAAAAGTACTTAGCTGCATTCTACCACTGAATAAGATCATACTTATTGGTTTTATTAATATATATTTCTTCTTTTTTTCTTTaAAAAAAAAAAAAATGGAatatatatatataaaaatgtaaagatatatatttatataATTAAAATgAATAcAAATCAATTtTATATGAAGTAACtAtAATAACAAACATTATTGTaCtTTAAACTGACTgCAGGAGCTTTTATTGTTTCTTTTATTATCTCTTGGAGACTTACGATGAATGTCTCCTCATTACCCATGAGCCTCAGCGGCAAAGACTGAATCCCACAGCGTCCAGGaTTATACACACCACGGAAATTAATTAAATCTACACATACAGAAAGGAAAAGTAATTAGACAAATAATAAAACTAATAGTAAGTATTAATTGTATAATTAGGAAGAGTATAACAATTTAAATTAAGCGAAAAAGCAACAATATGTATGAAAAATAATGTCACATTAAAATACACCAAAATAACAACGTGCAGTTCAACTCATCTAAACCCACCATCTGATTACTGTATTAACTCCTCAACCTACTGGCTGTCGGGGAAACCGCTTTACGTGATTAGATAACCGCTGCATCCAGCTGGTCATGAATGAAAGGAGGAGCAGGAAAGAAGAGTGGAGGAGCAGAGGGGCGTCACGGGGGAGGAATGGTCGCTGACTGACAGCTTGATCCTCAGCGAGTACAAAGACAAGTGGTCTTAAAGTGGCGACATCGCTCCTgagtgagagagtgtgtgtgtgtgtgtgtgtgtgtcaccCTGCCATGGCCCCAGACAGGCTTTTGTCAAAGTGGGTACATGGGTGGCGACACACAGCAGCTGACAGCAGGACATGACACAGGAGTCTGTTTAGGGAGGCGACAGGAATGTGGTGACCCACAGAGGAATGCCAGTCGGACGGTCAACACActaatcaggccggtgctttgcgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgatctgacttgggcaAAGCTTGACACAGTGGTTTTTGACCCTGAGCTCCAAGCGGCGGCCGGCGTGAGGAGCGACGGCTCTTTGCTCCCAGCCCGAAGGTGCCGGttccgctcaatttgacccgattcaatatttaatgtcggtgttctttcggcagtcaacaaacaaacataaagtacctcacacttaaacttggaaaacaagattaattctaataattttctggaggttttaattgctggcgtcaaattgaccccgagggtaaaatatgttagtaaatataaaggtaacaggagggtgaaacattgaatggggtcaaattgacccgaaggcaacaggagggttaaagcatttctttcctccttcctCTCGTCTTCCTCTGCACACTGTGTTCCAGATGGTGCTGCTGGCGCGCTGCGAGGGCCACTGCAGCCACACGACCCGCTCCGAGCCCCTCATCTCCTTCAGCTCGGTGCTCAAACAGCCCTTCAAGAGCACCTGCTCCTGCTGCCGGCCGCACACCTCCAAGCTGAAGGCGGTGAGGCTGCGCTGCGCCGGCGGGACCCGCATCACGGCCACCTACAGATACATCCTCGCCTGCAGCTGCGAGGAGTGCAGCGGCctgctgctggtcctgatgtgctgcccgctgctgGGCTTGGTCCGGTCCGCCAGCAGCAACAAGGCCAGCGATAAGGGACACCCACACCTGGGAGAAGCCGACCCGGAGCGCTGCATGAGGCACCACTTCGTGGAGACCATCGTGCACCCGATCTACAAGTGCAACTCCAAGATGGTGCTGCTGGCGCGCTGCGAGGGCCACTGCAGCCACACGACCCGCTCCGAGCCCCTCATCTCCTTCAGCTCGGTGCTCAAACAGCCCTTCAAGAGCACCTGCTCCTGCTGCCGGCCGCACACCTCCAAGCTGAAGGCGGTGAGGCTGCGCTGCGCCGGCGGGACCCGCATCACGGCCACCTACAGATACATCCTCGCCTGCAGCTGCGAGGAGTGCAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03045	DAN	DAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003064	Family	Norrie disease protein	Interproscan
IPR004133	Domain	DAN	Interproscan
IPR006207	Domain	Cystine knot, C-terminal	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28611	NORRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005109	Molecular Function	frizzled binding	Interproscan
GO:0005125	Molecular Function	cytokine activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0016055	Biological Process	Wnt signaling pathway	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0110135	Biological Process	Norrin signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-