Gene detail

Detailed information of HS01281 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS01281	NUCLEAR HORMONE RECEPTOR	chr2	11411385	11414444	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS01281

ATGCCCTGCGTTCAGGCTCAGTATGGATCATCACCTCAAGGAGCTAGTCCTGCAACCCAGAGCTACAGCTACCACCCCGCGGGAGAATACAGCTGCGACTTCTTAACACCTGAGTTTGTGAAGTTTAGTATGGACTTGACCAACACAGAGATCACAGCCACTACTTCTCTCCCAAGTTTCAGCACATTCATGGACAACTACAACACCAGTTACGACGTCAAACCGCCCTGTCTGTATCAAATGCCCCACTCTGAGCAGTCCTCTATCAAGGTGGAGGACGTCCAGATGCTCAACTACCATCAGCAGAGCCACATGCCACCTCAGTCGGAAGAAATGATGTCTCACTCTGGGCCTATGTACTTCAAACCCTCCTCACCTCACGCCCCGAGCACACCAAACTTCCAGGTTCAGCCAAATCACATGTGGGAGGACCCGGGCTCCCTCCACAGTTTCCACCAGAACTATGTTGCGGCCACGTCTCATATGATGGACCAGCGCAAGAATCCAGTGTCGAGGCTTTCGCTTTTCTCTTTCAAGCAGTCCCCGCCCGGTACTCCCGTTTCCAGCTGTCAGATGCGGTTCGACGGGCCGCTGCACGTCTCCATGAACCACGACAACCCGGGCGTGCACCGCGGCCTTGACGGCCAGAGCTTTGCGGTGCCCAGCGCCATGCGGAAACAGGCGGGTCTGGCCTTTCCTCACTCCCTGCAGCTCGGCCACGGGCACCAGCTGGTGGACAGCCAAGTGCCATCGCCCCCGTCCCGAGGATCTCCGTCAAACGAGGGTCTGTGTGCGGTATGTGGGGACAACGCAGCGTGCCAGCATTATGGAGTGAGGACCTGCGAGGGCTGCAAAGGATTTTTCAAGGTGGGCTGACGTGACAGCAACCGTGAATCAGTGTTACTGTTATTACATGAAAGATATGCTGTGTGTTCCTTCTTATTCACGGCGCTCGTGAGTTATCTAGTCTGCCCAATTTCCCGACAAAATAATAATAAACGCAAGCTGAACATCGGAGAGGATTGCAATTACAATATGGGCCCCGTTAAATATTACAGACCTACAAGTGTCTGCCTAAAATAACTTTATATGACAAGCATATCGGTCCATATAGTTGATCTCAAAGGAATAAGTAACATATGAAAGACAATACGAGTGTGTATTCGCTGGCGGTCTATTCCCTCTTGTTGGCTCACGGCGCAGCCCAAACAGGAGATGAGACAGATATTATATCGTTTTTATCTATTTCATTTTTGTTATGTTATGTTCGTTTTCTACATGTTCTACAGCCTTCAAAATAATAAGCCTGCAGAGTGACATGATGCTTTTCTTATTTTCCAGCGCACCGTTCAGAAAAATGCAAAATACGTGTGTTTAGCAAATAAAAACTGTCCTGTTGACAAACGCCGAAGAAATCGTTGCCAGTTCTGCCGTTTCCAGAAGTGCATGGTCGTCGGAATGGTGAGAGAAGGTATGTTTAGACCATGCATTTTATACCAGTAGTTTATATCCACATGTGCGTAATAATGTGTTGGAGTGTTATTTATACCATATTTAAGTGTTTACGCACAACAAAAGGAGGACATATTAATGACTCATATGTCATGTATTTCTTCCAATTGAGTTGTCCGAACTGATAATCTGAAAGGTCGGAGAGGACGCCTACCATCCAAACCCAAAAGTCCACAGGAGCCCTCCCCACCCTCGCCGCCGGTGAGCCTCATAAGCGCACTTGTTAGGACCCATGTGGACTCCAACCCCTCCATGTCTGCTTTGGATTACTCAAGAGTAAGTAAAGTACCATGATTCCAGAAATAAAACACACACAGCACTTAAAAAGAAAAAAAAGTTGACAGTTACGACTCCGGGCGAAAACAGAAGGAACAAGATGTACGGTCTTTTTAATTGAGTCTTGCAACAATTCATTGCCTTGAAAGTTGTCTGTAATACATCGCCGAACTCTTAACTTTGTCAGCCTTTTAATGTGGCATATTTTTTCCTAAGTATATTGCGTTGAAATAGAGAATTTAATAAAAAAAAGACATGAATTTAATCGTGAAAAGGCACCCTCTCCCTCTTGGAAATGGGCATTGGCAATTTCACGGATTATATATTTTAAAGGACCTCATTAAGGCGCTGTTTAAATTAAATTCCAGTTCCAGGCTAACCCTGACTACCAAATGACTGGAGACAACACTCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGCTCCATGGAGATCATCCGGGGCTGGGCGGAGAAGATCCCCGGCTTTGCTGATCTACCGAAGCAAGATCAAGATCTCCTCTTTGAATCCGCCTTCCTTGAACTTTTTGTCCTGCGCCTGGCGTACAGGTAAACCGCGTAATTATTAAATAACACTATATCTTGTCTTTAGATAATCAGCTCCTCCTTCAATCTTCATTGCGCTGCTGCCCAATAATAACAAGGCTGTTAAATTCCAATTTATAGTCACGCGTAATTAACGGCATTCTCTTATTAATTGCAGGTCCAACCCAGTGGAAGGCAAACTTATATTTTGTAACGGAGTGGTGTTACACAGGCTACAGTGCGTCCGTGGATTTGGAGAGTGGGTGGACGCTATCGTGGACTTTTCTTCCAACTTGCAGAGCATGAATATAGACATATCAGCGTTCTCCTGCATTGCAGCTCTCGCCATGGTAACAGGTGCGTAAAGGCGGCTGCTCCTTGGGAAACTGTGCCTGCGCTCCAATGCATGCAAGGCAGAGCAAGTGAATGCATCTGTAATCATTTATCTTTGTCCTTTTTTTTGTATTTCAGAGCGACACGGGCTTAAGGAACCCAAACGAGTTGAGGATCTCCAAAACAAGATAGTCAACTGCCTCAAAGATCAAGTGACTTTCAATGGCGGTGGATTGAATCGTCCCAACTACTTGTCAAAACTCTTGGGAAAGCTCCCTGAACTGCGCACACTATGTACCCAAGGTCTGCAGCGTATCTTTTACCTAAAACTAGAAGATCTAGTCCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACCTTACCTTTCATGCCCTGCGTTCAGGCTCAGTATGGATCATCACCTCAAGGAGCTAGTCCTGCAACCCAGAGCTACAGCTACCACCCCGCGGGAGAATACAGCTGCGACTTCTTAACACCTGAGTTTGTGAAGTTTAGTATGGACTTGACCAACACAGAGATCACAGCCACTACTTCTCTCCCAAGTTTCAGCACATTCATGGACAACTACAACACCAGTTACGACGTCAAACCGCCCTGTCTGTATCAAATGCCCCACTCTGAGCAGTCCTCTATCAAGGTGGAGGACGTCCAGATGCTCAACTACCATCAGCAGAGCCACATGCCACCTCAGTCGGAAGAAATGATGTCTCACTCTGGGCCTATGTACTTCAAACCCTCCTCACCTCACGCCCCGAGCACACCAAACTTCCAGGTTCAGCCAAATCACATGTGGGAGGACCCGGGCTCCCTCCACAGTTTCCACCAGAACTATGTTGCGGCCACGTCTCATATGATGGACCAGCGCAAGAATCCAGTGTCGAGGCTTTCGCTTTTCTCTTTCAAGCAGTCCCCGCCCGGTACTCCCGTTTCCAGCTGTCAGATGCGGTTCGACGGGCCGCTGCACGTCTCCATGAACCACGACAACCCGGGCGTGCACCGCGGCCTTGACGGCCAGAGCTTTGCGGTGCCCAGCGCCATGCGGAAACAGGCGGGTCTGGCCTTTCCTCACTCCCTGCAGCTCGGCCACGGGCACCAGCTGGTGGACAGCCAAGTGCCATCGCCCCCGTCCCGAGGATCTCCGTCAAACGAGGGTCTGTGTGCGGTATGTGGGGACAACGCAGCGTGCCAGCATTATGGAGTGAGGACCTGCGAGGGCTGCAAAGGATTTTTCAAGCGCACCGTTCAGAAAAATGCAAAATACGTGTGTTTAGCAAATAAAAACTGTCCTGTTGACAAACGCCGAAGAAATCGTTGCCAGTTCTGCCGTTTCCAGAAGTGCATGGTCGTCGGAATGGTGAGAGAAGTTGTCCGAACTGATAATCTGAAAGGTCGGAGAGGACGCCTACCATCCAAACCCAAAAGTCCACAGGAGCCCTCCCCACCCTCGCCGCCGGTGAGCCTCATAAGCGCACTTGTTAGGACCCATGTGGACTCCAACCCCTCCATGTCTGCTTTGGATTACTCAAGATTCCAGGCTAACCCTGACTACCAAATGACTGGAGACAACACTCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGCTCCATGGAGATCATCCGGGGCTGGGCGGAGAAGATCCCCGGCTTTGCTGATCTACCGAAGCAAGATCAAGATCTCCTCTTTGAATCCGCCTTCCTTGAACTTTTTGTCCTGCGCCTGGCGTACAGGTCCAACCCAGTGGAAGGCAAACTTATATTTTGTAACGGAGTGGTGTTACACAGGCTACAGTGCGTCCGTGGATTTGGAGAGTGGGTGGACGCTATCGTGGACTTTTCTTCCAACTTGCAGAGCATGAATATAGACATATCAGCGTTCTCCTGCATTGCAGCTCTCGCCATGGTAACAGAGCGACACGGGCTTAAGGAACCCAAACGAGTTGAGGATCTCCAAAACAAGATAGTCAACTGCCTCAAAGATCAAGTGACTTTCAATGGCGGTGGATTGAATCGTCCCAACTACTTGTCAAAACTCTTGGGAAAGCTCCCTGAACTGCGCACACTATGTACCCAAGGTCTGCAGCGTATCTTTTACCTAAAACTAGAAGATCTAGTCCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACCTTACCTTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR003070	Family	Nuclear receptor subfamily 4 group A member 1-3	Interproscan
IPR003073	Family	Nuclear receptor subfamily 4 group A member 2	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24085	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0021953	Biological Process	central nervous system neuron differentiation	Interproscan
GO:0035259	Molecular Function	nuclear glucocorticoid receptor binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0071376	Biological Process	cellular response to corticotropin-releasing hormone stimulus	Interproscan
GO:0071542	Biological Process	dopaminergic neuron differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-