Gene detail

Detailed information of HS01051 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS01051	CONNEXIN	chr2	6355084	6356232	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS01051

ATGGGGGACTGGAGTCTCCTGGGGAATTTCCTCGAGGAGGTTCAGGAACACTCGACCTCGGTCGGGAAGGTGTGGCTCACCGTCCTCTTCATCTTtCGcATCCTGGTgCTgGGCACcGCGGCCGAGTCGTCcTGGGGCGACGAGCAGAGCGATTTCCTGTGCGACACCCAGCAGCCCGGCTGCACCAACGTGTGCTACGACAGCGCCTTCCCCATCGCACACATCCGCTACTGGGTGCTGCAGATCGTTTTCGTCTCCACGCCGTCCCTCATCTACATGGGCCACGCCATGCACATTGTGCGCAGGGAGGAGAAGCTGCGGAGGATGGAGCAGGACCAAAGGGAAGAGAGAGGGGAAGGCGGGGGAGACCTGGAGGGGGAGAAGGAATACCTTCAGCACAAGCCCAGCAAAAGCATCATGGCAAACGATGGGACTGGCCGTGTGCGCCTCAAAGGAGCGCTGCTGCAGACTTACATCCTGAGCATCATGATTCGCACCGTAATGGAGGTGACATTCGTCGTGATACAGTACATGATCTATGGGGTGTTCCTCAGGGCCTTGTACCTGTGCAAGTCTTGGCCCTGCCCCAACGCCGTCAACTGCTACATGTCCCGGCCCACCGAGAAGAACGTCTTCATCATCTTCATGATGGTGGTGGCCGGTGTGTCTCTGCTGCTCTCTGTGCTGGAGCTCTACCACCTTAGCTGGAAGAGCGCCAGGAGGTGTTTACGCAACAAGAGGATGCAGAAGAGGACGATAAcggtggcggcggtggcggcggcggcggcCTCGGAGCCCAACGGCCCACCTCGGCCCTCGGCCTCCTGCACCCCACCTCCTGACTTCAGCCAGTGCCTGGCAGCCCCGAACTCCCTGAACCCCATAACCGCCATGGCCTCTCATCCCTTCAACAACCGGATGGCGCTGCAGCAGAACTCGGTGAACTCGGCCACAGAGCGGCATCACAGCTGCGACAACCTGGGGGAGGAGGAAGACTTCTTGAGGGTAAGATACGACCGAGTGCCCTCGGAGCTGCCCAACCGCTGCTCCCCAGCGCTGCcGCTGCACTCCAGCTACACGAGGGACAAACGACGCCTGAGCAAGACCAGTGGCACCAGCAGCCGGGCTCGGAAGGATGACCTGGCCGTAATGGGGGACTGGAGTCTCCTGGGGAATTTCCTCGAGGAGGTTCAGGAACACTCGACCTCGGTCGGGAAGGTGTGGCTCACCGTCCTCTTCATCTTtCGcATCCTGGTgCTgGGCACcGCGGCCGAGTCGTCcTGGGGCGACGAGCAGAGCGATTTCCTGTGCGACACCCAGCAGCCCGGCTGCACCAACGTGTGCTACGACAGCGCCTTCCCCATCGCACACATCCGCTACTGGGTGCTGCAGATCGTTTTCGTCTCCACGCCGTCCCTCATCTACATGGGCCACGCCATGCACATTGTGCGCAGGGAGGAGAAGCTGCGGAGGATGGAGCAGGACCAAAGGGAAGAGAGAGGGGAAGGCGGGGGAGACCTGGAGGGGGAGAAGGAATACCTTCAGCACAAGCCCAGCAAAAGCATCATGGCAAACGATGGGACTGGCCGTGTGCGCCTCAAAGGAGCGCTGCTGCAGACTTACATCCTGAGCATCATGATTCGCACCGTAATGGAGGTGACATTCGTCGTGATACAGTACATGATCTATGGGGTGTTCCTCAGGGCCTTGTACCTGTGCAAGTCTTGGCCCTGCCCCAACGCCGTCAACTGCTACATGTCCCGGCCCACCGAGAAGAACGTCTTCATCATCTTCATGATGGTGGTGGCCGGTGTGTCTCTGCTGCTCTCTGTGCTGGAGCTCTACCACCTTAGCTGGAAGAGCGCCAGGAGGTGTTTACGCAACAAGAGGATGCAGAAGAGGACGATAAcggtggcggcggtggcggcggcggcggcCTCGGAGCCCAACGGCCCACCTCGGCCCTCGGCCTCCTGCACCCCACCTCCTGACTTCAGCCAGTGCCTGGCAGCCCCGAACTCCCTGAACCCCATAACCGCCATGGCCTCTCATCCCTTCAACAACCGGATGGCGCTGCAGCAGAACTCGGTGAACTCGGCCACAGAGCGGCATCACAGCTGCGACAACCTGGGGGAGGAGGAAGACTTCTTGAGGGTAAGATACGACCGAGTGCCCTCGGAGCTGCCCAACCGCTGCTCCCCAGCGCTGCcGCTGCACTCCAGCTACACGAGGGACAAACGACGCCTGAGCAAGACCAGTGGCACCAGCAGCCGGGCTCGGAAGGATGACCTGGCCGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00029	Connexin	Connexin	Domain	Interproscan
PF16791	Connexin40_C	Connexin 40 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000500	Family	Connexin	Interproscan
IPR013092	Domain	Connexin, N-terminal	Interproscan
IPR017990	Conserved_site	Connexin, conserved site	Interproscan
IPR019570	Domain	Gap junction protein, cysteine-rich domain	Interproscan
IPR031862	Domain	Gap junction alpha-5 protein (Cx40), C-terminal	Interproscan
IPR034634	Homologous_superfamily	Connexin, C-terminal	Interproscan
IPR038359	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11984	CONNEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005243	Molecular Function	gap junction channel activity	Interproscan
GO:0005922	Cellular Component	connexin complex	Interproscan
GO:0007154	Biological Process	cell communication	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0007507	Biological Process	heart development	Interproscan
GO:0086044	Biological Process	atrial cardiac muscle cell to AV node cell communication by electrical coupling	Interproscan
GO:0086076	Molecular Function	gap junction channel activity involved in atrial cardiac muscle cell-AV node cell electrical coupling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-