Gene detail

Detailed information of HS00902 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00902	MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN	chr2	1028027	1031455	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00902

ATGACTGAGAGTAAAGCAGGGACGGCCCCTGCGCCGGCCAAAGAGCTGCTGGCGTTGAACCCCAAACAAGAAACCGAGTTCAAGAAGCAGGTGCAGGAGGCGAAGAAGAACAAATCTAGCAAGGTGGGTCGAGAGGGACCCGTGGCCCTGAAGGCACCATTGATTCCTAAACACGAGGGTGCTCACGGAGCTCTTTAATTACTCCGCCGCGGCTCTCCGTCCGTCCTAAGTGGACCCGTGCGACACCGTATTACGTCACCcGTCAGCCCGCGTGACCCAATTGGACATTTCGGCTATCGTGAATTAGAATTTGACGTATTAAAGTAACAAATAGCTCGTCGAGCTAATGGTGACCTTTTTaTTTTTTtACTATTTCTTTTTTTCAAAaGGTAATGTCATTATTCCGCCACAGTCCGGTCCTGGAGGGGGTCTTTACATTGTAACGGGTACCTCGGTACTGGTCCAGGTCTCCAGGGTTCACGCTGTACTCTGAGGCCGCAGCAGAGAGCGTGTCTGCGGGGTCTAGAGCTACACAccggtgttacggtttaagaagcgaccgtgttaactggcgactttgacccgaacgcgtccgttgttgtcgtagttagtcagctgtATAGTATCtattattatgtatatgagaggggttgacactgtatcacaacattaaaccaagtggcattctcgaggacagttataggtgttttctaccctgtttttccaacggccgtcgtaactacggcaacggacgggttcgtcagttaacaggatcgcGGTAACACCGGATACGTCACGGTTCAGCTAAACATCTGTATCCATTTAGAAGTGACTCATATTAAACTGGGCCTCAACCATCATGACATTAACCAACACAGAAAAGTGTGTATTATTATTATGAATGTCTGTGGACCTAACAACTTTTTCTAATACATGAAATAAAATATGCTATTTCCATTAGGGGGGGACAATAAAAACATAGGTAGCACATGTACTCATGGTACTACATATCTGTTTCATGGCTAAATGTATCTTCTCTGTAATGTTGTCCCCTTTGTTGTCCTTTAATTATATTTCATTCTTTTTTCCAGGGGGGGCATTTGGACCCTGGCGTGATTTATGTGGGTCACCTACCACGCGGGCTGTTTGAACCTCAGCTCAAGTCTTACTTCGAACAGTTTGGGAAGGTCCTGAGGCTGCGGCTGTCCCGGAGTAAAAAGGTAGCACGCATTGATGACTACATGTTCAACAGCACAAGCGTACATGTCCTCGGCTCTCGTGACCTTTTAGAGAGGGCCGGTGACCCCTTGCTGGGAcGTTCTGcTGGGGGTTGGCTCCGAATGAAAATGATCTCAGATGTAACCGTGGTCTGAGGTCAGATACCGGAGCCTACAGCACCGTGGTGCGTTTAAGCTTATCACCTGCTTCCCAGTGGCaGAGCGATAAAACCCATGTGCCAACAAAAGCTCAAATAATTAATTATCTCCATCATGATATATATCTATGGTATGTTTTCTGGTAATATAATCAGTCAGAATTAAATCGACAGTGTAAAACATAGAGTATTTTTTCATTTAATTCTGAATCTCAGGGCCGTTTCAAGGGAAATTAAAATCAGACTGACTGTATTTGTGAGCATATAATCAGGTTAGTACGATACTTaGATTTAACGACACTAGTGTGTTTCCTCAAgCTAAAATGTTTCTCCATTTAGACAATGAATGACCACATTGAATTGTTACCCAGCCCAATGAAATGCAGATGTTGGCTGTGAACCTGTGGGCTGGTGTTCACCGTGTTCCCCACCTGTGTTTCCCTCAGACAGGTGGAAGCAAAGGCTACGCATTCATCGAGTTCGAATGTGATGAAGTCGCCAAAATCGTGGCGGACACCATGCACAATTACCTGATGGGAGAAAGGCTCATCAAATGTGAGTATGGCTCCCGGGAGCCAGAGATGGTAAAGACGTTATTCCCGTGAAGGTGGACAGTGTTCCCCCGTTTACTCACTGCCCGATGTGTCCCAGGTCAAATAATTCCTCCCGAGAAAGTGCACGAGAAGCTGTTCCTCCATTCCGAGAGGAAGTTCAAGAGGCCGTCGTTCCCCGCCGTGGCTCGCTACAACAAGACCCGCACGGAGGAGGAGCTGACCAAGATGAAGGACAAGCTCCTGCGGAAGGAAGCCAAGCTCCGCAAGAGACTGGCGGCGCACGGCATCGACTACGACTTCCCCGGATTCGTGAGTACTGGGAGGGGAGAGACGTGAATAAAAACAGGATTCGTCCCTAGAGCGACAGCCGACCTTGAGAATACAgTCAATGTCATGCGAGTCTCTTCCAAACAAAGtGTGGCGTTCTCCACTGAAGAGCTGTTCTACACcagggttcgtacggtcatggagaacctggaaaagtcctggaatttttaaatggttatttccaggccaggaaaagtccttggaaaataaattaaatctcaaaagttttgtaaaagtcctgaaaaatgttgttatattcatatgttcatttacacagtttgattaaaagaatacacatttatataaatgtgtattcttttaatcaaactattgtctgatgtaaggtttatacttgtgtttacaaagatttcactaaatgtttagtcatggaaatgtgttttaaagtcctgtaaatccattggtcagcgtgtgtaCTGGCaTCTGTACTTTGTTTTAATGCTCCTcTGCTTTCCAGGCTTCCCAGGTGCCCCCGAAGAAGAAGTCCTCTGATTCCATGGATGCGTCTTCGTGTAGCGACGTAAGCAACAAACACTGTCGCGCTTCTTCTTGGCTCAGAGTGAAAATGGCCCCCGGTGCACCAGTGACCTGGGGTCAGACAGCTGGGCCTAGAGCACTGTGTGCATTTAGCTTATTGCGCGTCTCCTGGTGGCTGCGTAATGAAACCCTTGCACCAACACGCTGCAAAGATGTCTCATTATCATCTACTACTGTTACGGTGGTGCCGTTTTCTCCGGCTTCAGACTAGTCTTTATCAGTTCCAGACGGCACACTGGTTTTCTATCTCGCTTATAGAAACGACTAGTTTGCGTATTTGTAATAACAGTCATTTATATTTATATTTATTCTTTTGCATTTAGCTTAGTCCGTGTGTTTTTGTGATTTCCCGTGCCTCCTCTGTGGTCGCGCCACTAGCAGAATGAGCACCTGTGGCTCATGAGCTGCTCTGGTCCGTTTCAGGGCCCCACGCCGGTCTGCACCCCCTCCGTCCTGGAGAGGAGGAAGTCCACCGTCCCcgacgacgacgacgtagacgatgaGATCATTCTCAAGATGCCCCCGGTAGGAATGGACGATGAGCGCTCCTCggaggaggaggaagaggaggaaggcgatgactcggagggcgaggaAGCCGCCGCAGTGGATGCGGAGATGACTGAGAGTAAAGCAGGGACGGCCCCTGCGCCGGCCAAAGAGCTGCTGGCGTTGAACCCCAAACAAGAAACCGAGTTCAAGAAGCAGGTGCAGGAGGCGAAGAAGAACAAATCTAGCAAGGGGGGGCATTTGGACCCTGGCGTGATTTATGTGGGTCACCTACCACGCGGGCTGTTTGAACCTCAGCTCAAGTCTTACTTCGAACAGTTTGGGAAGGTCCTGAGGCTGCGGCTGTCCCGGAGTAAAAAGACAGGTGGAAGCAAAGGCTACGCATTCATCGAGTTCGAATGTGATGAAGTCGCCAAAATCGTGGCGGACACCATGCACAATTACCTGATGGGAGAAAGGCTCATCAAATGTCAAATAATTCCTCCCGAGAAAGTGCACGAGAAGCTGTTCCTCCATTCCGAGAGGAAGTTCAAGAGGCCGTCGTTCCCCGCCGTGGCTCGCTACAACAAGACCCGCACGGAGGAGGAGCTGACCAAGATGAAGGACAAGCTCCTGCGGAAGGAAGCCAAGCTCCGCAAGAGACTGGCGGCGCACGGCATCGACTACGACTTCCCCGGATTCGCTTCCCAGGTGCCCCCGAAGAAGAAGTCCTCTGATTCCATGGATGCGTCTTCGTGTAGCGACGGCCCCACGCCGGTCTGCACCCCCTCCGTCCTGGAGAGGAGGAAGTCCACCGTCCCcgacgacgacgacgtagacgatgaGATCATTCTCAAGATGCCCCCGGTAGGAATGGACGATGAGCGCTCCTCggaggaggaggaagaggaggaaggcgatgactcggagggcgaggaAGCCGCCGCAGTGGATGCGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12196	hNIFK_binding	FHA Ki67 binding domain of hNIFK	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021043	Domain	MKI67 FHA domain-interacting nucleolar phosphoprotein, FHA Ki67 binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46754	MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000463	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-