Gene detail

Detailed information of HS00640 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00640	ENDOTHELIN	chr1	16722325	16724454	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00640

atgatATCACTCGCAGGGGGTTGTATAAGTAGATGTCCTGGCAAGAAAGTGAACACAAAGCACCTGTTGCAGCTCCTCAGCCTCGACACGGTCCAGCTTAAAGACTCGTCTACACCTCCTGGAGCGTGTCAACTGACCGCTGCTGCCTTCACACATCAGAACATCAGACACAGGATGAGGACCATGGCTTCTTTCATGTGCAATACGATGGTTTTATTCTTCATCTGCATGGCTCTGCAAGAGAGTGAGTACCTTTTATTTTGGTTTCTTGAAATTCTAGATTAGATTTCTGTAAAAAAAAAAAAAACCTTTTGTAGATTGTAGATTTTTGATGTATACATTTTCTTCCATTATGAATACTTTTTGGGCCACATGCAATGAATTACCGGGTCTCTCTTGGCTAGTTTCGGTAAAGTTTGGAGGGTTTGAAGATTTTCCAAAATAAACAATGTTATAAAAATAGTCAAAACAACACAAATTAGTTAGAGCAAAAGAAGAAGATGCTTGTATGACTTTTTTTTATAACCAGTAACGACAGAAAGTATAATACAAGAACTGTGTTCAACCTTCCAGGGAATGTATTTACCTTTGATAACCCACCTCTTATTGAAAAGCAATCACATTGCTGCCACAGCATAATTGATATGACCACTTCTTGCAAGGATGTTTGCCTGTTCCTTCATTTTTAAAACAATAAATATTTTCCTCCATTAATCACAACCTCATTTGTTTCAATGCACAACTGGGTGTTAACCCACCAGGTGGATTTCTCTGTAGTCACAAACTGTCACCGCGAAGGATTAGTCGGCACTTTTTAATCTCGGGATCCTTTGTGTTTTTCTAGGTTGTGGACTCCCGTTATCAGACCGGGAAGAGCTGCCAGCTCAGGCTGCTCACAAACACCGAGTCAGGACCAAACGCTGCTCCTGCAACAGCTGGGATGATAAAGAATGCATCTACTTCTGCCACCTGGATATTATCTGGGTCAACACACCAGGGTGAGGCATCAGAGGACTTCAGACGTTCACTCAGGGAGCTGTTTTTTGTGACTAGACTGGGATTTGGATTAAACCCCCCTAATCCTGACCCCAACGGCACTCTGTCACAGTTTTCAAACTAATATCAGATCCCTCCTGCTTTCTCCAACCCTGTCCTAATATCTTTCGTTTTCCTTGACAGTAAGCTCCTTCCTTACGGCCTTGGAAGTCCCCTGTCTCGTCGGCGCCGCCGTTCAGCTGAGAGATGCGAATGCCGCGACTCGGCCGATAAAACCTGCTCCGGCTTCTGCCATGCAAGGTAACCGCCCTTCCCCTGAATCTACCTCGACTGACAACAAAGCAAGACTGTCCGATCCCGTACACGCTCCTTTGGATGCTCGATAGTATCAAAGCGCGTTGATGTCGAAAATGAGTCAGAGTGCAGGCAAAATGATTCAGTGTTTGATAAGGTGACTACGGTATAAGGGTAGTAGTCATGGGGGAAAGGATGGCCCACATTTCCTTGGAAGCCTTGAACGAAATCGCAAAGAAATGCTGCTATATTTAGAACGTTTAGATTCCTGCTTTTGCTCAAGGAAAGGTTTGTTGCGTCCTTGAGTTATTGCGTTCATGAAACCACGAGTATGGATTAGTCACCGCCTCTAGATGTTATCAAGGCATCTTGAGATATATTAGTTTTTCAATTCCCAGAAAATTGCTTCCTGGATTATGAACCACTTTTGCTTCAATTAACCTAATAATGCCAGTCCAACGCGTCAGATTGTCGAGGTTTGATTCCCAGAGACATTGGGAGGCTTACGTGTCCTGGTTTTAATGCTGTTGTTGTATCTCTCAACAGCTCAAAGACTCCAAGGACGAATGTCGTGGGCCCGTTGGTGCAGTCTGCAAGCACAAACAGCAACACATTGCTGGAATCCTTCAGGTACGTGAAGAGGGATTTAAGGATCAAGTTTAAATCCATATTGTGCTTTGTTTGATGCTCATTTATAGAACATATGACACTTACCCTTTTTTTCTCTTGTTTTATTTTTGCAGATCTGTAGTCAAGTCCAACTTTGCGGTCGCAAAAGAGGTTCTGTCATCAAGCAAGAACGCGGGTGGAGTCCACAGACTGAGCGGCAGAACCAGGAGGatgatATCACTCGCAGGGGGTTGTATAAGTAGATGTCCTGGCAAGAAAGTGAACACAAAGCACCTGTTGCAGCTCCTCAGCCTCGACACGGTCCAGCTTAAAGACTCGTCTACACCTCCTGGAGCGTGTCAACTGACCGCTGCTGCCTTCACACATCAGAACATCAGACACAGGATGAGGACCATGGCTTCTTTCATGTGCAATACGATGGTTTTATTCTTCATCTGCATGGCTCTGCAAGAGAGTTGTGGACTCCCGTTATCAGACCGGGAAGAGCTGCCAGCTCAGGCTGCTCACAAACACCGAGTCAGGACCAAACGCTGCTCCTGCAACAGCTGGGATGATAAAGAATGCATCTACTTCTGCCACCTGGATATTATCTGGGTCAACACACCAGGTAAGCTCCTTCCTTACGGCCTTGGAAGTCCCCTGTCTCGTCGGCGCCGCCGTTCAGCTGAGAGATGCGAATGCCGCGACTCGGCCGATAAAACCTGCTCCGGCTTCTGCCATGCAAGCTCAAAGACTCCAAGGACGAATGTCGTGGGCCCGTTGGTGCAGTCTGCAAGCACAAACAGCAACACATTGCTGGAATCCTTCAGCAGATCTGTAGTCAAGTCCAACTTTGCGGTCGCAAAAGAGGTTCTGTCATCAAGCAAGAACGCGGGTGGAGTCCACAGACTGAGCGGCAGAACCAGGAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00322	Endothelin	Endothelin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001928	Domain	Endothelin-like toxin	Interproscan
IPR019764	Conserved_site	Endothelin-like toxin, conserved site	Interproscan
IPR020475	Family	Endothelin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13874	ENDOTHELIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003100	Biological Process	regulation of systemic arterial blood pressure by endothelin	Interproscan
GO:0005179	Molecular Function	hormone activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006874	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0014826	Biological Process	vein smooth muscle contraction	Interproscan
GO:0019229	Biological Process	regulation of vasoconstriction	Interproscan
GO:0031708	Molecular Function	endothelin B receptor binding	Interproscan
GO:0060585	Biological Process	positive regulation of prostaglandin-endoperoxide synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-