Gene detail

Detailed information of HS00398 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00398	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	chr1	10142190	10146761	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00398

CAGCTTCGTCGGGAGGTGAGACTGAGGCGAGAGTACCTGTACAGGAAGGCCCAGGAGAACCGGCTCCGAACAATCGAGGAGAAGAAGGAGAAGCTGAAGGGCGCGCTTGAAGGTGGAGGAGCAGCATCATCATTTTCCACCCTGCTGCTTTTCGATCTGACGGTTGGTCGGCAGTGTAAAAGATCCCGGTGTTAATGCAGGCTGTGTTTTTTTCCCTCTTTGCAGAAAATCGTCTCCTTCCAACCGAGGTGCGCAAAGATGCTCTGCAGCTGCAGACGCTCCTGGAGTACGACGACGAAGGGGGCGAAGGCGAGTGCCCCTGTTTGTTATTATGAGCAGCATCCTGTCACGTTGTCTTTTCTTTGGCAACGTTGTGTTCCTTCTAGGTTTTGATTCATTGGGGTGGTCTTGTCTGCAGGTGTCAGCTCCCACATGGATGATGAGTACAAGTGGGCCGGAGTTGAAGACCCAAAGTTAATGGTCACCACATCCAGAGACCCCAGCTCCAGACTCAAGATGTTTTCCAAGGTCAGACCAGTTTCTCTGCAGCGAAGGGCTCAGTGAGGACAGCAGCTGGCCTGAGTGGATATACTCTTGATATATAATATACACACTATTCTATGGGTCTGAACATGTTTCTAAAAGAATAGTTTTGTAGAAGTAATTATATAGGAAAGGGAGACTGTCCAATTACCATAGTACCGTTTACATTTTTTGTGAGAGCACTACAGGCTTTCTACACGTGCAAACATTTTAAATCTGGGCACAGGCAAGGATACAATTCTGAAGTATAAAATAGTAAATGGATAGTAAAATAAATCCTATTGTGGTTAAATTTAAAGGTATGAAATGCATTATTGTCTGTAAAAAGACAGAGTTGCTTCATTTACCCCAGACTGTTTTTCAAACAGAAATCTAGAGCATATAGGACTCTAACAGATGAGTTACTGCTCCCTATTAAATGCTGATTTGGACAACAAAAGTAAAAAGCACAACCTACTGAAAAAAGCCCGAATGAATTCATCAGTCTTGTCTTCATCAAAAAGCTCACAGTGATCGGAGAACAACAtgtggggggtgtgtgtgtgtgtgtgtgtgACGATTACAGGAGGTAAAGCTGATGTTCCCTGGAGCCCAGCGCATGAACAGAGGCAACCACGAGATCAACTCGCTGGTGAAGGCCTGCAAAGCCAACAACGTCACAGACCTCGTGATCCTGCATGAAACCCGAGGAAAGCCAGGTACGCCGGCGTTTACCTCAGTCTCTTATTTTATTACTTTTTTTTCTTTCACAAATCTAATGCCGTGTACTGGGAGAGTCCCATTGCACAAGTGAAAGGAGCAGCTGCTGTCTAGTAGTGAGTGCTAATAAAAGAGCTGCATCTGGGAAATAATGCTTATATTTATTATATGAAATGATCACATAGTGTGATTAGTCTAGTAAACCTACTCAGAATTTAGAGGGAACACAGCTCTCGTATTTATTGtcaattcagtttattttgtagagcccaaaatcacaaattgcagttttgcctcagagggctttacaatccgtacatactacatcctctgtcccgggacctcacatcggatcaggaaaaactcccccgggaagaaaccttcgggggagcaacagaggaggatccctctatcaggatggacagaagcagtagatgtcatgtgaccagaatgaacaacataacagagtttatgcacactcaatgaatatgacaaaTGATTCATatcagaatcagaattgtatttattgccaagtaggtttacacctacctggaatttgttctggtgtataggtgcatacagtgaacataaaatgaacataaaacatagaacatacaaacacaataagtactacgatatgagtagtaggcatggtaaaACCgttacgaccaccaaaaatagcagcagcagtgtatgtcatagaataatactgataatggaggaattaatggtattggcaatactaatagcaaagcaactaatgataaAAGCAGGAGGTGTGAAGCAGGACCAAGAGGCAGATAACCACGATCCATGTCATCGGAGTATAAAGACAACCGGTGACGGGCGGCGTAGCTCATTGATTTTCTGTATATTTTCAGATGCCATGGTGGTGTGCCACTTGCCGTTTGGACCCACAGCTTACTTCACGCTGTACAACGTGGTGATGAGGCACGACGTTCCCGACATAGGCACCATGTCGGAGGCCTACCCCCACCTCGTCTTCCACAACTTCTCCTCGCGGCTCGGCACCAGGGTGAGTGAGCTGCACTGGGCTTTGTTGATGTTCTCCCATCACCTTTTTTGTGTGGCTCCAACTAATGGATCATTCTGCTCGCTCAGGTTTCAAACATCCTCAAGTATCTATTTCCGGTGCCGAAGGAGGACAGTAGGCGCGTCATCACATTCGCCAACCAGGAGGACTTCATCTCTTTCAGGTTGGTGCTGCTGGACTCGGTGCAAATGCCAAAAGACTTTCCCTTTAAGGATGCTCCACAATAACGCCCTCGTATTTTTATAGGCATCACACCTACAAGAAGACGGACCACAGGAACGTCAAGCTGACAGAAGTGGGACCCAGGTTTGAGATGAAATGTAAGTATCGAGAGATTTTTCACCTTCTATATTAAGGATAGCCGTTAGCCTCACTTGGCACAAAGACCGTGTGGTCATCTATCAGGATATTAACACGTACACTCCACAGCCCTGTGTGGCTACAAGGAGTGtAcAAAGAGTGATGTCCTTCCCCCGCCGAGCACTGCTACGTACCACTCCTTTCATAACTTGGACCAGATATTTAAATTAATAAATGAATCCCGATGCAGTTTAACAAAGTCTTTGTTTTGTCCTTTGATgATAATGTGGGTCTCAACACAGCCTTGACTCGTGTCTTACagtcacagactggatgtattttgctccagttacttttgtgtgtgattatgaagcaaaacttttttactgctttaaattctgtctttacatttatttttattgcaactaaTTCAAAGCaattcacacgttggtatagtccgatcagttgtgcccgagatgaagcagtgatattattaggcgtagttgtgagtttaactgcgtcgcattagtttaatattaTAGTTTTCTCTTTTCTAAAATGGCATACACTTacagggtttttcctgggtcaaaatgggtctttggtgctccccaaaagaatgtttggccaggcgcgccttcttctctattgacatgtcattgaaTTAGCAGACATCTAGGTTTTTTGttttttttttttaagaaaatcattttgctaaaatagatagctaatagattgattaattagagatgcaccgatcaggttttgtgccgatcatgtagggcatgtgagagtcggctgagttgacccagagagtctcggggggacgccgccgcttcggggtggtgaggatcctcgtgacctcttctgctctcaacgccgggcgacgtctccgcgcgcgccccgcgccattatgatgatgctcatctgatttcatttccatttgatcgattcgatcgtgatcgtccgcttgagaacgcgaggatcaatcgaggcatgggaatataatatggatcggactatgatcgatccggtgcatcccatccctcctatatggtgtctgcgtgttgctggcttgtcgggctgttgcagttgacagcagctgatccattcacaagcaccgaacacgcttaggcgttcggaaaagcgggcgccgcgcaaatgcctctctatgcaggaaaaaccctgCACTTACTGtGATTCAGGGTTAGTTGAGCCAGATTAACGGACATAAATCCTGGGTATGTTGAACCTGCTTATATTGTAGTGATGGGAATTCCGGCTCTTTTTAGTGaACCGGCTCTTTTggCTCgGCTCACTaaaaaaaaatctcttcttcctctcccaaatggctcttcagattggtgcttaaattgttttggagaagattctctgagggggactggcgttaatgcaatgcatagtctccgtgcacacacacaagtaaggggcgtactgaagccttgtctccaccactcagtgggtgggtctgcacttctgaaagggctctcagggtaggatctcttccagagacgaatctgctggaggattctccttgtcgccactgccacgctttcaaagaacctccaaagttgcagtagacatactggcaccttcaatgaatatcagtctcttgttgtgttttttcttgagagagagagagagagagagagagaaaaagaaaaaacatcaatcaatcagtcattcacgtcacgttcacaagagccggctctagagagccgtttctgtttcaCATCACTATTATATTGAGGAATCCAGTTCTCAGGAAATAGTTATTTTAGCAATTGTTCTGAACGTCTTTTCTTCTGCGATGTGTGACACGTTGACCTTTGTCCTTCTGCTCAGTGTATATGATCAAACTCGGCACCCTGGAGAACGAGGCCACCGCGGATGTGGAGTGGCGTCACCACGCGTTCACGAACACAGCCAAGAAGAGGAGGTTCCTCAGTGTGCAACAGCTTCGTCGGGAGGTGAGACTGAGGCGAGAGTACCTGTACAGGAAGGCCCAGGAGAACCGGCTCCGAACAATCGAGGAGAAGAAGGAGAAGCTGAAGGGCGCGCTTGAAGAAAATCGTCTCCTTCCAACCGAGGTGCGCAAAGATGCTCTGCAGCTGCAGACGCTCCTGGAGTACGACGACGAAGGGGGCGAAGGTGTCAGCTCCCACATGGATGATGAGTACAAGTGGGCCGGAGTTGAAGACCCAAAGTTAATGGTCACCACATCCAGAGACCCCAGCTCCAGACTCAAGATGTTTTCCAAGGAGGTAAAGCTGATGTTCCCTGGAGCCCAGCGCATGAACAGAGGCAACCACGAGATCAACTCGCTGGTGAAGGCCTGCAAAGCCAACAACGTCACAGACCTCGTGATCCTGCATGAAACCCGAGGAAAGCCAGATGCCATGGTGGTGTGCCACTTGCCGTTTGGACCCACAGCTTACTTCACGCTGTACAACGTGGTGATGAGGCACGACGTTCCCGACATAGGCACCATGTCGGAGGCCTACCCCCACCTCGTCTTCCACAACTTCTCCTCGCGGCTCGGCACCAGGGTTTCAAACATCCTCAAGTATCTATTTCCGGTGCCGAAGGAGGACAGTAGGCGCGTCATCACATTCGCCAACCAGGAGGACTTCATCTCTTTCAGGCATCACACCTACAAGAAGACGGACCACAGGAACGTCAAGCTGACAGAAGTGGGACCCAGGTTTGAGATGAAATTGTATATGATCAAACTCGGCACCCTGGAGAACGAGGCCACCGCGGATGTGGAGTGGCGTCACCACGCGTTCACGAACACAGCCAAGAAGAGGAGGTTCCTCAGTGTGCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109	Domain	Brix domain	Interproscan
IPR044281	Family	U3 snoRNP protein/Ribosome production factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034457	Cellular Component	Mpp10 complex	Interproscan
GO:0042134	Molecular Function	rRNA primary transcript binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-