Gene detail

Detailed information of HS00383 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00383	SER/THR PROTEIN KINASE-TRB	chr1	9755420	9760265	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00383

ATGAACTTGCAGTGGAGCAGCCCGGCACCCTGCATCCGCACCGGGAGAGTCGCGCACAAGCGGCTGGACTCAGACGATCAGCCACCGACCAAATGCGCCAGGCTGAGCGCCGAGGCGGGGGACACACAGGGACTCCTCGGCACCTCTCCCGGTTCCCCGGTCAGCCTCGTCTCCAACGGTATCCCGGCGACCCACCAGGGGCCGTCCAGGATAGGACCATTTCTGCTTCTACCTCTAACGGACCGAGAGAGCGTGCACAGCGCGATGAACAGCGACACCGGCGACGAGCAGCTGTGCAAGGTATGCGCAATCCCGTCGTTGTGTAATATTCTTGTAATGAATGGCGTTTGAAGACTTGGCGTTGCTCAATAGAGCTGTCTGACATGTCATCGGGcTTCAGCCGACTTGTTCGGaAAATGTCATTCTCACGTGAAATGTGTGTGTGTCACACCTTTGCGTAATGGCAGGAGTGATTTTTAAATCCTGAACTACATTACATTATTTCAACTGTGTTGACAAAGACACGAAGGACCAGTCAGCCCCATGGCCTCAGCTGTGTGGTGGAAATACAGCCTACCTATCGACATCCACCTATCCTGGGCAATGTGGCTTCACACGGTGTCTGTCAACTCGGCTCATTTGCATACACGTCACTGCATTACGCCAGGCCGTGacacacacacgcacacaacacgcaaacaTGTGAGGCAAACACTCATGATAATGACAGTATCCCTCCGCTGCTCCAGATCTATGCGTTTTATGTTGCACGATAGACCTGCAGGCGTTTGGCTTTGTTGATGACTAAAGTTAATCGTGTCATGCTTTTCTCATTCGTTTGTCATGCTTTTGCAAAAGCAGCTGGAATCAAAGCATATCCCATGGCTTTGTTTGTTaTTTAATTCGTTGCCAAATTTGCATGCTTGTTTCCTCAGATGATCATTATGAGCACTGACCCATTGCCAcctcctcctcctctccctccctccctccctcactccctccctccctgcctccGAATCTTCCTAATTTCCATCctgctgtgctctgctctcctctctcaggtctTTGATATGGGAGTGTACCAGGAAAAGATCAGAGCCTACGGGATCCTACCGGCCCACAAGAATGTGGCCGGAGTCAGGGACATCATCCTTGGCGAGCGTAAAGCCTACGTGTTCCTGGACAAGGACTTTGGGGACATGCACACGCTGGTGAAGAGCTGTCGCAGGCTGGACGAGGACCACGCCTGCAGGCTCTTCCATCAGGCGGCTCTGGCGGTGGCACACTGCCACCAGGCGGGCATCGTGCTGGGTGACCTCAAACTGCGAAAGTTTGTCTTCGCAGATGAGAAAAGGTGAGCAGCACATCCCTTGCAGTACTTTCAACGACACTTCAAATACTGGTCCCCAGTGTCAGATGACATGTGAGCACTTTCTCGCATCGTAACCGTGCACCTGCTCCGCGTCACGCTCATTCGTCTCAGTTTCATTCAGCTCCAATAACAGGTAACTTTGTTATGATGCTGTCAGACCTAAATACATGCAGTGCAGTGGGACGAGCCAGTGAAGACACAGAGCCAACGCAGCAGCAGCTGATACACACAGGCCATGTGTGCCGATATCAATGTGGGCACAGATAGAGTTGGAGGTTCTGTCCTTGTGGAGGCAGACTGCATAGCTTCCCAGATTCTCGCCCTCTtTGTCTGTCTCCCGACGTGTCTCTTTGTGTGCGTGTTTGTTTTGCATGTGTGCGCGCACGCATGTGTGAATGTAGTAGGTGGTAGTTTGGCAGAGCTGCGAGACGAGGCGGGTGAATGAGACAATCATTCCCTTCTCCATTCTATGGCTTGGAATATATCTCTTCCTCATTATTTATTCATACTTTACATCAGAGCGATTCTGCAGAACAACAAATGCTTCCAACAAGGATTCATTCAAATAAACGTTCATCCCTGCATGATTGAGTAGGTCAAAGCTCTTTGCTTCAAAAATGTCTCCCACACACTCGTgTCTGCATCTCTGAGCGCTACACATTCAGGAAGACACACAAAACGCCTGCCTACAAAACTATTTGTCGCCTCTTTGCCCTCCCGTCACACTCTTTCCTGTAAGCGCCTGTTGATGTAGCACAACCCCCCCCCCCCCcacacacacacacatacacacacCCCCTTTGGCTTTCCAAAGGTCCTTTATCATGGAGACTTCTCAACAGTAACATTCTCCATCCATGACCTCTGGGTTtGCAGGGTCACACTGGATGAATGAAAGCAGACAGCCAGTGAGAGAAGTTGAAGTTGGTTGCGTCTCTCTGATAGCTATACGGCTGCAGAGaGATGAGTCACAGAGtATATGTGCAGAAAGGAAGACGAGGAGGGGGGCTGGATAGCTCATTTTCTTTCCTtgtgcatgtgtgtgcgtgtgtgtgtgtgtgtgtgtccatacattcatatctgttgtatgagagctaattgaacaTTCAGCGTCAGCTCAATGGCTTTTGCCCGTAATTTTGTATTTAGTCCGTAGAGCTACAGCATTATGACGTTGTGGGATGACATTGTTTGTAACTACTCGTTACACTTTGGCAGGCGACACACTGCAGTGCCGCGACAGATGATTTAACGTGATGTGACTATGAGGACAAAAGCATTGGATTTTGCCGGTAGTGTGGAATTTAGCTTTTGTTCACACTGAGGTGGCTTCCTCTCTATCCAATCACAGGCAGATGTTTGACGTGCATCAATATGTCTTCTTGAAATGTTGCAATTCTGCGTGACCCCATCAATCCGAAATCAGGCATCTTTCAAACCCCGACAATCACGCTATGATGCAATGTCCCTGCCAACAATGCAGCACCTGAGCCAGAGACAGAAAATCACAACTATTtgacagatgctatctccaagcacgcgtacacgcacacacacacacacacacacagtgcatttGGAGAAGCCAGTTTAGGGAAAGTGACTAGCACTGTGAAGCATGCAGAGCTTCACTGCTGGGCCGGCCTTCCTGTGCGTCACTGATGTGGCAACAGCCATTTGAGGGTAATTATGGGATGGCTGGCGCCGCGAGTGTGGGACCCAGGTGCAGATAGCCGCGgagagagagagagagagagagagaATAAAAATAAAAATGTACTCTCAACAGAAGGATGAGTCATTCTCTCCACCCGTCTAACTCTCTCTGTTCTGTTTCCTTTTCTGTCTCCATCGCTCGCTTTCCACCCCTGACTTATCTCCTCCACTATCTTGGTGTTTAAATATCATTTGCTTTCTATCTTGGTCCTTCTGGCTGTCAATCTTTTCATCCCCTCTCTGGCTGATTATTTCTCTCTCCAGCCACTCCGTCTGACAACTGAAGTGTCTCCCAGAGTCAGTCGACCCTCTGATTGTGAGATAAAGCAGCATACTACTTGATAAAGCCTCAATCACTGTGTTATTCTTGGGAGAAAATCTTAAGAGGCACACTATTAATTTTTAATAAAATCTTGGCACGACTGTCGCTGTTGAAAATGAATCATTAATTTTCCCATTCCTATTAATCATTTTTTAAAGTGAGCTTCAGACGTAAATGTCCTATTCTACAAATACAATTTCACAAGTGCCGGACTAACTGCATGTCCTGTCTTTAACATGGCTAAATATAGCATTGTGAGTTGGGGAGGAGAAGGACTTGTATATTTATGTGTGTGAGTCTGCATGTGACCATGTGTGCCAGGAAGTCATTGGAAATGTGCTTCGACAGCTCTGATTCTCAGGCTGGACTTACTGCtgtgcacttaggtcttagggagttcactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccatctgtccatcttccatgtagcttcaAGCTCAAGGAAGGATGTTTGTTTTTCCTGTGATGCAATTAGTGACTTAAATTTAATAGATCACTGAAATGTTTGACAGTGGTAAACAAAGCCACCGTTAGAAATAGACTCACACAAACACTACACACCACCAGTGTTGTACTAGATCAAGGAATGACTTCTGATTAAAATATAGTTAAACATGGGGAACTCCGAGGACATCTTTTCCAACAACACCATATTCTGCAACAATATTCTGCTTGTGGCGTGCAGATTTAGACGGAGGTCCTTTGGTTTCACGACAACGTGTAAAAGATAACCGATGATGTCACTGCCAAATTGCAGTGCGACTAAATCTCTCACCAGTAGCTGGTCTTCGTGTAGAAAGGGCATTCTCCAATGTAACATGTGGCTCACGGAAAGGAACGTACTACATGAAACATATTTTATTTGTCACAGCTTTTCAAAGGTCTTTTGAAATTTGCTGACCTTATTTTGATGTTTTCTTCACAGGACACATGTGAGACTAGAAAGCCTGGAGGACTGTCGCaTCCTAGAAGACCCAAGCGACGACTCCATGTCAGACACTCACGGCTGCCCCGCCTACGTCAGCCCAGAGATCCTCAGCGGCTCCGCGCCTTACTCTGGCAAGATGGCCGACATGTGGAGCCTGGGGGTCATGCTGTACACCATGCTGGTTGGCCGCTACCCGTTCCACGACCCGGACCCGGCCACGCTaTTTTCCAAAATCCGCAGAGGCCAGTGCTGTTTGCCAGAGGGCTTGTCGCCCAGGGCCAAGTGTCTGCTCCAGAGCCTGCTGAGGAAGGAACCCTGGGAGAGACTCACGGCCAATGAGCTGCTCGCTCACCCATGGTTCCACCAGCCACCGTCGTCTCAGGAAGTGGCACTGGGTGATCAGGAAGTGAGCTCGGCAGAACAGATGGTACCAACCTTTAAAGTGGAAGAGGAGGATGATCTGTTCTGCATGAACTTGCAGTGGAGCAGCCCGGCACCCTGCATCCGCACCGGGAGAGTCGCGCACAAGCGGCTGGACTCAGACGATCAGCCACCGACCAAATGCGCCAGGCTGAGCGCCGAGGCGGGGGACACACAGGGACTCCTCGGCACCTCTCCCGGTTCCCCGGTCAGCCTCGTCTCCAACGGTATCCCGGCGACCCACCAGGGGCCGTCCAGGATAGGACCATTTCTGCTTCTACCTCTAACGGACCGAGAGAGCGTGCACAGCGCGATGAACAGCGACACCGGCGACGAGCAGCTGTGCAAGgtctTTGATATGGGAGTGTACCAGGAAAAGATCAGAGCCTACGGGATCCTACCGGCCCACAAGAATGTGGCCGGAGTCAGGGACATCATCCTTGGCGAGCGTAAAGCCTACGTGTTCCTGGACAAGGACTTTGGGGACATGCACACGCTGGTGAAGAGCTGTCGCAGGCTGGACGAGGACCACGCCTGCAGGCTCTTCCATCAGGCGGCTCTGGCGGTGGCACACTGCCACCAGGCGGGCATCGTGCTGGGTGACCTCAAACTGCGAAAGTTTGTCTTCGCAGATGAGAAAAGGACACATGTGAGACTAGAAAGCCTGGAGGACTGTCGCaTCCTAGAAGACCCAAGCGACGACTCCATGTCAGACACTCACGGCTGCCCCGCCTACGTCAGCCCAGAGATCCTCAGCGGCTCCGCGCCTTACTCTGGCAAGATGGCCGACATGTGGAGCCTGGGGGTCATGCTGTACACCATGCTGGTTGGCCGCTACCCGTTCCACGACCCGGACCCGGCCACGCTaTTTTCCAAAATCCGCAGAGGCCAGTGCTGTTTGCCAGAGGGCTTGTCGCCCAGGGCCAAGTGTCTGCTCCAGAGCCTGCTGAGGAAGGAACCCTGGGAGAGACTCACGGCCAATGAGCTGCTCGCTCACCCATGGTTCCACCAGCCACCGTCGTCTCAGGAAGTGGCACTGGGTGATCAGGAAGTGAGCTCGGCAGAACAGATGGTACCAACCTTTAAAGTGGAAGAGGAGGATGATCTGTTCTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR024104	Family	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22961	SER/THR PROTEIN KINASE-TRB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0031434	Molecular Function	mitogen-activated protein kinase kinase binding	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0043405	Biological Process	regulation of MAP kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-