Gene detail

Detailed information of HS00377 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00377	V-TYPE PROTON ATPASE SUBUNIT C	chr1	9645492	9650732	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00377

ATGACAGAATTCTGGTTGATCTCTGCACCGGGGGAGAAGACGTGCCAGCAGACCTGGGACAAGCTGATGGGGGCCACAACACGCACCAACAACCTCTCCGTGAACAACAAGTTCAACATCCCTGACCTCAAGGTCAGTCATGTGTATCCCCCACCAAAGTCAATCCACCTTTAAGTAgTCTAGTGGAGGTTTTTCTTTATATTTCCGTGTGTTTTGTCTCTCACAGGTCGGAACACTAGATGTGTTGGTGGGTCTGTCaGATGAACTGGCCAAACTAGACACCTTTGTGGAAAGGTAAACCTCTATGTGTTCAAACTTTACTGAAATAGTTTGTATAATTCCCTCTAAGGAGACAATTGTTAGATGAACAAATACCACATTTTAGTACAGTTCTGCTTTTTtTGTCATCTAATGCTTCTCTCGTGACTCGTGTCAGTGTGGTGAAGAAGGTCGCTCAGTACATGGCCGATGTCTTGGAGGACAGCCGAGACAAAGTCCAGGAGAACCTACTCGCTAATGGAGGTAACGGCTGTTTACTTATCAGACTGGTGTCCGGACGAACACCTGTCGGTTGTTCACAGACATAAGTCgAAGGTGGTAAAAAGCAGCATAATGTTGTTGGTTGGACTTTAGAGCAAGACATTGTAGGTTCCTGTGTGCTCACATGTACAATCAGACCCAGTCATTGGAAACGAAGGTGATTAATGCAGATgACTTTAATCTGTTCCACAGTTGACCTGGTCACCTATATCACCAGGTTTCAGTGGGACATGGCTAAGTATCCAATCAAACAGTCGCTGAAAAACATCTCTGAGATAATCGCCAAGGTAGAAATCTGTCGCAGTTTGATTTTGATTGATGAGTTATTATATGTTTGGTGCTaGAAATTATCCCCACTGAACTACGTAGAGTATATCTGTATACTCATTATAAAATATGGAAACCATCCTGGTATTTATTtTATATTTATTATATTTACTACATTTTGGGAAGTACCgTACGCTTATTCCTTCTCTTATTGTTCTCTAGCAAGCGACGCAGATCGACAATGACCTGAAGGCCAGAGCTTCAGCCTACAACAACCTGAAGGGAAACCTGCAGAACTTGGAGAGGAAGAATGCGTGAGTTATAAAATAATAATAACATGAATACACTGtATGTTGTCTGTAATTTGATTGCGGAAGCATTGACTAAcGCCAAATACTGTGGAACTCCTTTAGCTTTATTGCAAAATATTATCTCATGTTTTATCTGTGGTTATCTTCCTGtACAAGAGATCAATGTTAAAGTTAGTCCTCATGCAATACTTACCTTCATGACAGCATGTACGTATGTCATCCTGGTCCCTACACACAGCAGTTACAGACAGAAACCACAGAACATATTTtTCTGTTTTCCCTTTTCCTGCCATAGCTtTGAAGTAAAAACTCACTTAACATTGTCATCTTAACAATATACATTTTACACATCACCCTTTCTGAgCTGCCCTGAAATTCTGCTGTAACTTAAATAAAAAATGTTTCCAAAATGTAACTTTATAACATTTGGCAGCCtTTTTTGCATAtCGTCACACCTCAAAGGAGGAGGGGATTCAAATATTCAAATATGTTTTGTTAAATGTGTACAATACAGATTATTTGTATCACTTTGTAAAGATTGAAGTTGCCTGAGTATCTGACCTGCATGTGTCATCTTTTAGGGGGAGTTTGtTAACCAGGAGTTTGGCTGACATAGTGAAGAAAGAAGATTTTGTACTGGACTCAGAGTACCTTATTACCATGCTGGTGGTTGTCCCAAAGTAAGTACACTGACATCTGTATCTATATAgTCACTATACGGGGAGGTAAGAGTTCTCATGTCATTGTATCAATGGTAGATTTGATAGAGGATCTCCTCTTcAGCTGCATGGGCTACAAGGTCGAACTACAATCGATCCCCGATTCCGGAGTTTGCACgttctccccgtggttctccgtctgtggcccaaagatgtgcatcttaggttaactggagactctaaaatcttgcccaatgtcagctgggatcggctccagcgccccacgaccctaaaatagaataagcggtttgcgtaatggatgaaATGGGGGTTCCATGGGGTAGATGAAGGTCATTTTCAGTCCCATCATGTCGTTCCCAAGAGGCTTCTTGGTTCTTGCTGTTACCCTTCCCTTTACACCCTCACAGGACAAGTTATGCTGACTGGCAGAAGACGTATGAGACTCTGGCAGAAATGGTCGTGCCACGCTCCACAAAGTAAGCTTGGTGGTTCAGTTTAATTACTTTTCACAAATGTATGAATGATCTACCAAAAGAAGAAGACAATTGTGTTTTGTGACGTATCTGATTTTAAAGTCTTCGTTGAaaataaataaataattatagactaataaataGgcaacataattactctccatcaccacttgagccactagaggtgtgtggtagtgtctgtatctgcagagacccggcccctgcctgaactattttttttcAATGTAACTGCCAGATGGTAAGCACTCACTCCAAAACAAGAGTGAATATGGGGTTATAGCTGTCGGGGAAAGGGACCAACTTGAATATTGATATATTTATTGTCAGGCAGTGCGCCACCCTCCACGTCGTACATGTCCACGACAGTTGCTTCAACAGGTCTGAATATTATCGGAAACATTTCATTGCTGACCCTTAAAAAGCaACAGACTCgAATCAAAATAGAAAAGATTATGTGGTTGACCTTTTGCCAACCGGGCCGTATGATATGAGTCGTTATGTTCGGGCTTTTGGACAGACATGGCTAAGTGTGGTACAGTAACCTAGCAACCAAAACATATCTGCAAATGCAACAGGAAATGGGAAACCTCATATATATcGTATGCAGCTtGAAAGGGGActATTTGTGATGGTTTCTATCTCTACCTTGATAATACCATGTCAACACCGGCATTCAAACCTGGCACAAATCGAGTGCTTTGGTAATGCTGACTTGATCCGTATCTTATTCTTTCTATATAATATCTATGATTTGGTTCCAGCACACACAGTTGGTTTGTGTTTTTGTTTTTGTGAGGAGGTGGtCCTCTGCAGAGAAGTGTATTGGAAAGAATGAGATGGCTGTTGCTGTAGTCGAGTCGTGAGGCGATGGAGgCGTGGATGAGCGTTTTCAGCAGCTGAGCTTgaGAAGGAGATGGGAAGATGACAATAATCCTGTCCTTCTTTTTGTCAGCAGCtTTCCTTTTTTTTGTAAAAACAGCCTGAAATGTGTCAAACGTACTTTATGTATCCAGCTCCCAGCTTAGTTTATGGTCGCCTGTGCGTCGCGCGTCAAGGGGGCCGCAAAGGGTTGCTGACTTTTTGTAACTTGGCGTGAATGTCCCGGtgtcagacctgtcacaaatagttaactgataaaaacactatttacgtgtcttggattattcaaagcaggccagtttgtttttagatgttatagaaacatgaggtcttaaataaatccttattttgagtaaatattttgcagccaaatcaaattatttacagggttttcaacctttgtttctttacaatgaatgttagacttgactggcttgtacaaaggcattacagtagtccatggatatgagatatgagtttgcagtataaacaaAGCTGTGTGTCATGTCCTCTCCTCCAGGCTGCTGTTTGAGGACAACGACAGCGGTCTGTTCAGTGTCACTCTCTTTACGAAGGCTATCGATGACTTCAAGCACAAAGCCAGAGAAAACAAGTAAATTAATTTTATCTTCCATTCAAGATATCTTTGTTTCATGTTTCTATTTTGTGTTTTTGTAAAATCATCCACAGATAAATGGCAGTAATGATATCTCATTATTGCAATAGGCTACTTATGTGTTAACAAAGGAACTGGCTTGTTATGCTCTAAAAAAAGACTGCCATTCTATAATAAACACAATTGGCCAGCACTCGACCGTCTCTCCAGTTAGGACGACTAGGATCTATGTTTATGTATCAtctttgtctgtagcccttgtgtgtgtgtgtgtgtgtgtgtgACGGCTGATTGCCAGCCCTCTGCTGTGTGCCCTGACCTAGGTACACAATGCGGGATTTCCAGTATAATGAGGAGGAGTTGAAGGCAGACAAAGAAGAGATGACACGTTTGTCCACTGACAAGAAGAAACAGTTTGTATGACGGCTATTTTTGTCATTAACAGTAATACTGACTAAGAAGAGAAGGAGGAAGCTCCTGGAGCTTTCTTACATTGGGCTGAAACCAGTTAAATAGAATTCTGTCACGAGGATGATTTAATTAAATAAACATCAAAAATGGTAATTTAAGCCAGTTAACAAGtatatattctttatatatatatatatatatatTCTAGAAAACAATAAAATGCTGTTTCTATCCACCCAGGGGCCTTTGGTACGGTGGCTGAAAGTGAATTTCAGCGAAGCCTTCATCGCGTGGATTCACATAAAAGCCCTTAGTGTGTTTGTGGAATCGGTTTTGAGGTAAGCAAGTGAAGACCCAGCAGCTTACATGAAACACCCTCAGTGAAGTTCATCTGTCTGTTACTCTTTGCATACTTTCACGTCCATACTCTCACCCTTTTTAATGCAACATTACTTTATTCTTGTTTCCTATGAAAGAGGAAAAATGTCTGAAAGACTTTTTGTGATTCATAGGTATGGGCTGCCGGTGAACTTCCAGGCCATGCTGCTGCAGCCCAACAAGAAGAACATGAAGAAGCTGAGAGAGGTGGTCTACGACCTGTACAAACACCTGGACAGCAGCGCTGCGATCATTGATGTGAGTCCCCGTCACACGCTCTTTGATAGTGAAAGTGTCACGTAAAATGATTGGAGGAAGGCAGGTCCAGCTCTCTGACATGTAACAGGGTCCTGAGGATGACTAAGATCCTCTGATGTGTTTGAGCTCCTGACATCTGGTTGTCACTTCAGGATGGAGGGACTGGATTACCTATAGATACATTTCCCTAACTGCTCTTGACTTGGCTGCAAACTTATTGTTTCAATTGCACAATAGTACAAATTACATTGTTTTTCTAATGATTGTGTGTGTGTGATTATGTTGTCTAACTGTCTCTGTTGTGGCTGCAGGCTGCTATGGACATCCCAGGGTTGAACTTGAGCCAGCAGGAGTACTACCCGTATGTTTACTTCAAGATCGACTGCAACCTGCTGGACTTCAAAGTCATGACAGAATTCTGGTTGATCTCTGCACCGGGGGAGAAGACGTGCCAGCAGACCTGGGACAAGCTGATGGGGGCCACAACACGCACCAACAACCTCTCCGTGAACAACAAGTTCAACATCCCTGACCTCAAGGTCGGAACACTAGATGTGTTGGTGGGTCTGTCaGATGAACTGGCCAAACTAGACACCTTTGTGGAAAGTGTGGTGAAGAAGGTCGCTCAGTACATGGCCGATGTCTTGGAGGACAGCCGAGACAAAGTCCAGGAGAACCTACTCGCTAATGGAGTTGACCTGGTCACCTATATCACCAGGTTTCAGTGGGACATGGCTAAGTATCCAATCAAACAGTCGCTGAAAAACATCTCTGAGATAATCGCCAAGCAAGCGACGCAGATCGACAATGACCTGAAGGCCAGAGCTTCAGCCTACAACAACCTGAAGGGAAACCTGCAGAACTTGGAGAGGAAGAATGCGGGGAGTTTGtTAACCAGGAGTTTGGCTGACATAGTGAAGAAAGAAGATTTTGTACTGGACTCAGAGTACCTTATTACCATGCTGGTGGTTGTCCCAAAGACAAGTTATGCTGACTGGCAGAAGACGTATGAGACTCTGGCAGAAATGGTCGTGCCACGCTCCACAAAGCTGCTGTTTGAGGACAACGACAGCGGTCTGTTCAGTGTCACTCTCTTTACGAAGGCTATCGATGACTTCAAGCACAAAGCCAGAGAAAACAAGTACACAATGCGGGATTTCCAGTATAATGAGGAGGAGTTGAAGGCAGACAAAGAAGAGATGACACGTTTGTCCACTGACAAGAAGAAACAGTTTGGGCCTTTGGTACGGTGGCTGAAAGTGAATTTCAGCGAAGCCTTCATCGCGTGGATTCACATAAAAGCCCTTAGTGTGTTTGTGGAATCGGTTTTGAGGTATGGGCTGCCGGTGAACTTCCAGGCCATGCTGCTGCAGCCCAACAAGAAGAACATGAAGAAGCTGAGAGAGGTGGTCTACGACCTGTACAAACACCTGGACAGCAGCGCTGCGATCATTGATGCTGCTATGGACATCCCAGGGTTGAACTTGAGCCAGCAGGAGTACTACCCGTATGTTTACTTCAAGATCGACTGCAACCTGCTGGACTTCAAAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03223	V-ATPase_C	V-ATPase subunit C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004907	Family	ATPase, V1 complex, subunit C	Interproscan
IPR036132	Homologous_superfamily	Vacuolar ATP synthase subunit C superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10137	V-TYPE PROTON ATPASE SUBUNIT C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000221	Cellular Component	vacuolar proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0015078	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0033180	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-