Gene detail

Detailed information of HS00329 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00329	TRANSCRIPTION TERMINATION FACTOR, MITOCHONDRIAL	chr1	8560373	8561506	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00329

ATGGCAGCAGTAACTGCAGTGAGGGCTCTCCTCTGCTGTCTTCGATCAGTGACGTTGCTGCGCAACTTTGGGCACATTCCAGCGCAGTCGGCATCAACCTTCCTCCCGAGGGGTTTTTGCAACGCCAATAGTAATGAGCTCACAGAGAATAAATCTCTGGTGAAGAATCTGAAACTCCTGGGAGTCGATGTGAGGAAGGCACGCCTGCGTCAACCCGGGGTGCTTCGTAAAGATACTACTAATGAGAAAGGGCTCGCAAAGTTTCTGCAGGCTAAAGGTGCCAGCAGCAAAGTCATTGCCAGCATCATATCCCGTTACCCCCGCGCCATCACCCGCTCCATCGAACACTTGGTCCAGCGCTGGGAGCTATGGAGAGACATCTTCCAAAAGGATGAAGACATTGTGAGGATCCTGAATCGCTCACCAGAATCTTTCTTTCGCTCCAGTGATAACGGGAACTTGGAGAAAAACATAGTCTTTCTGAACTCGCTGGGTCTGAACACCAAAGACCTCCATCGGCTGCTGACCACAGCGCCGCGAACAGTCTCCAACAGTGTGGAGCTCAACAAGCAGATGGTGAAGTTCCTGGAAGACATCTGTGTCAAACTTGGCGGAAAGAATCCAGAGGAGTTTCCTCGATTAGTCATATCCAAAAACTATTACGTTCTCATCCGAAGCACGAAGAGAGTCGAGACAAACATCGATATCCTGAGAGCTTCTCTCCAGTTGAGCGATTCAGAACTGCTAGCTCTCCTTGAAGGCCCCGGGGCAGAAATACTGGATCTTTCTAATGAATATCTGAAAAATAATTTTAAAGTTCTCAAGCAGAGGATGGTTTCACTTGGCTGTCAGGAAATTGACATAAAAAAACTAATCCTCGGCTATCCAATGATTCTGTACATTGGGGCAGACACGCTGAGTACTAAACTGGACTGTCTTCTCAGTGGAGGAATAACAATTAAGCAAATCCTGAAAAAGCCCAAAGTGTTAGACTACAGCACACAGAACATTACAGGGCGACTCGGGGAGCTGCAGAAATTGGGGTATGACTTCGAGAAGAGTGGCATCAACATCCTGGACTCTAGCCGAAAACGGTTTGATGCAAAGATGGAAAGACTTAATGCCTCAAATGACATGGCAGCAGTAACTGCAGTGAGGGCTCTCCTCTGCTGTCTTCGATCAGTGACGTTGCTGCGCAACTTTGGGCACATTCCAGCGCAGTCGGCATCAACCTTCCTCCCGAGGGGTTTTTGCAACGCCAATAGTAATGAGCTCACAGAGAATAAATCTCTGGTGAAGAATCTGAAACTCCTGGGAGTCGATGTGAGGAAGGCACGCCTGCGTCAACCCGGGGTGCTTCGTAAAGATACTACTAATGAGAAAGGGCTCGCAAAGTTTCTGCAGGCTAAAGGTGCCAGCAGCAAAGTCATTGCCAGCATCATATCCCGTTACCCCCGCGCCATCACCCGCTCCATCGAACACTTGGTCCAGCGCTGGGAGCTATGGAGAGACATCTTCCAAAAGGATGAAGACATTGTGAGGATCCTGAATCGCTCACCAGAATCTTTCTTTCGCTCCAGTGATAACGGGAACTTGGAGAAAAACATAGTCTTTCTGAACTCGCTGGGTCTGAACACCAAAGACCTCCATCGGCTGCTGACCACAGCGCCGCGAACAGTCTCCAACAGTGTGGAGCTCAACAAGCAGATGGTGAAGTTCCTGGAAGACATCTGTGTCAAACTTGGCGGAAAGAATCCAGAGGAGTTTCCTCGATTAGTCATATCCAAAAACTATTACGTTCTCATCCGAAGCACGAAGAGAGTCGAGACAAACATCGATATCCTGAGAGCTTCTCTCCAGTTGAGCGATTCAGAACTGCTAGCTCTCCTTGAAGGCCCCGGGGCAGAAATACTGGATCTTTCTAATGAATATCTGAAAAATAATTTTAAAGTTCTCAAGCAGAGGATGGTTTCACTTGGCTGTCAGGAAATTGACATAAAAAAACTAATCCTCGGCTATCCAATGATTCTGTACATTGGGGCAGACACGCTGAGTACTAAACTGGACTGTCTTCTCAGTGGAGGAATAACAATTAAGCAAATCCTGAAAAAGCCCAAAGTGTTAGACTACAGCACACAGAACATTACAGGGCGACTCGGGGAGCTGCAGAAATTGGGGTATGACTTCGAGAAGAGTGGCATCAACATCCTGGACTCTAGCCGAAAACGGTTTGATGCAAAGATGGAAAGACTTAATGCCTCAAATGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02536	mTERF	mTERF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003690	Family	Transcription termination factor, mitochondrial/chloroplastic	Interproscan
IPR038538	Homologous_superfamily	MTERF superfamily, mitochondrial/chloroplastic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15437	TRANSCRIPTION TERMINATION FACTOR, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006393	Biological Process	termination of mitochondrial transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-