Gene detail

Detailed information of HS00273 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00273	CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR	chr1	7728394	7730076	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00273

ATGAATTCATTGGGCAACTCTTCCAAATGGCCATCTTATGACTCGCTGAGCTCCACCTCGAGCCATCTCTTGAGTGAGAGTGAGCAGACGGAGGACGAAGCGGACGTCTTCTCAGAGGGAGAAGGGGACAGTTGCATAAGAAAGAGTCTCGCTGGCGACAACGGAATCACGCTCTTCCCAGCTCTTTCAGACCAGCTGCACTCGAGGTCTAAGGGCAACGGGCCTGAACGCTGCCCTGCCGAAACGAAGCGACCCGACCAGGCCTCTTCTCATGGAGCCGCCGCGCTCGGCTCATCTTCAGCGACACCTGGGGACCGGACCTTCGCGCAGAAAGTGAGCACTCTTAAACTGATTCCTAGGTCTTCATTTCGGCATTGCCGTCAGCCAAATATCAGATCAGTTGTAACTGACTTGTCTTCCTATATTCTCAGTGTGCAGATTTGCGGCGTTTTATCAGTCCTTTGCTGGAACTTCTACATGGACTAAAGACTGGGCGGTTTGACAAAGGTATGTTGGTTGAGCAATATCAAACATGACTATTGTGTTACATTTTCAGTACTTCCTGTATTTAATGTGTTTATTTACCTTGTTGGGTTTTAATTGCTGCAGGTCTATCGAGTTTCCAGCAGAGTGTTGCCATCGACAGATTGCAGAGGATTCTTGGAATTCTACAGAGACCTGAAATGGGGTAAGTCCAACTCAAGTAGCAAACCTAATAATTGTGACAGTATCAGGGGGATATTGTAATGGTCATCCATACCCAGCATTGTTGTTAATGCTTGTCGCCTAACTTCGATTTTTTACATTTATTTTTTCCTGCAGTGAGAAATACCTCCAAAACCTGCTGCAGATAGAGATGATGCTCAAAATATGGTTCCCTCGGGTGGCATATCAGTCCACAGACATACCAAGCCAGACCACCACTCCCAGAGTCCGGCCACACTGGTGCCAAAACCAGCTCCACATGCCAGTGAAGGTGAGCTTCAAATTGGATTTAACCATATGCCAGTACCTTTACAAGTGTACATTGATAAAACCATGGGTCTATTTGTATTTTATTAAAACAATTATCCATGTGAAATATATCAGAATATACAGCAAGGCAAAAGAAGGTACAAGATAAAAACATAAATCTGAAACGAGAGCATGAAAACAATTCTACTGTAAAGATTTGGTGGAACTATATAAAGCATGAATATAGGAGGCATCAAAAAGAATGTTTCATGATTTAAATCTTGGGTTTTACCTTAAATCGGCTCAACTAAAGTTGTAATAAACTGTAGTTTTCAGTTTTAAGGCCTTGGTTTCTTATGGTATTTATTTTTTGGTTTTACTTTTTCGCTTCAGAAAAGAAAGCTGAGCTGTTCAGACCGCGACAACCCCAGCAAAATCCTAACTAAGCACTATGAACATGGGAGCTTCCAggCTgcaacTCCaCTTGCCACATGTCTACCAGGATCACCCAAGAAGCCGAGGGCTTCGGAGGAAGGCGCAGCACGACCAGCTGAGCATGAGTTTACGTACGGCACTGTCACTTTAAGCAGGCCATTATATTCATGTGGCAAGAGAGAAAATGAGAACCGAAAGCCGTCTGAGCTTCCTCTGCCCTGCCCTTGTAAAAGCCTGGCCACACAGGACAGCTCTGTGTCCTCTAGTGACATCATGATTACAACTTACTCAACTATGAATTCATTGGGCAACTCTTCCAAATGGCCATCTTATGACTCGCTGAGCTCCACCTCGAGCCATCTCTTGAGTGAGAGTGAGCAGACGGAGGACGAAGCGGACGTCTTCTCAGAGGGAGAAGGGGACAGTTGCATAAGAAAGAGTCTCGCTGGCGACAACGGAATCACGCTCTTCCCAGCTCTTTCAGACCAGCTGCACTCGAGGTCTAAGGGCAACGGGCCTGAACGCTGCCCTGCCGAAACGAAGCGACCCGACCAGGCCTCTTCTCATGGAGCCGCCGCGCTCGGCTCATCTTCAGCGACACCTGGGGACCGGACCTTCGCGCAGAAATGTGCAGATTTGCGGCGTTTTATCAGTCCTTTGCTGGAACTTCTACATGGACTAAAGACTGGGCGGTTTGACAAAGGTCTATCGAGTTTCCAGCAGAGTGTTGCCATCGACAGATTGCAGAGGATTCTTGGAATTCTACAGAGACCTGAAATGGGTGAGAAATACCTCCAAAACCTGCTGCAGATAGAGATGATGCTCAAAATATGGTTCCCTCGGGTGGCATATCAGTCCACAGACATACCAAGCCAGACCACCACTCCCAGAGTCCGGCCACACTGGTGCCAAAACCAGCTCCACATGCCAGTGAAGAAAAGAAAGCTGAGCTGTTCAGACCGCGACAACCCCAGCAAAATCCTAACTAAGCACTATGAACATGGGAGCTTCCAggCTgcaacTCCaCTTGCCACATGTCTACCAGGATCACCCAAGAAGCCGAGGGCTTCGGAGGAAGGCGCAGCACGACCAGCTGAGCATGAGTTTACGTACGGCACTGTCACTTTAAGCAGGCCATTATATTCATGTGGCAAGAGAGAAAATGAGAACCGAAAGCCGTCTGAGCTTCCTCTGCCCTGCCCTTGTAAAAGCCTGGCCACACAGGACAGCTCTGTGTCCTCTAGTGACATCATGATTACAACTTACTCAACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15673	Ciart	Circadian-associated transcriptional repressor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031373	Family	Circadian-associated transcriptional repressor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35441	CIRCADIAN-ASSOCIATED TRANSCRIPTIONAL REPRESSOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-