Gene detail

Detailed information of HS00242 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00242	RIBOSOMAL PROTEIN S7	chr1	6843090	6845580	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00242

AGCTCACCGGATATCTGCTCGCGGCGCCTCGAAAAGGCCCTTTTCCGTCTCAGAGAAGTGTGGTTCACTACGGCTGACACAAGTGAGTGGAAAATTCAATGTTTGCTCGCTTTATGTGTCATGAAAAAGATTATTAACGGGTATTTAGAATCGTCACCGGCTCAGATTGTCCGACAGATGGGGACTAAACATATACATTTGCCGTAATGTTGCTGTATTTCCACTAAGATTTGCTcGAGCACAACGACCAGGAGCGTTAGCATGTGGCTATCTTGTTAGCACATGTGGATGCGGCATGTTAATCAGCGACCTCGATATGTCTCGAACGCAGTaCTTTATTTCACTACATGTTcCGAAACTATACTTACTAGTGTCGCGTGTCTCAATGTGAATACACCATCCATGAATACGAATATACATTGTCACAATTTTTCAGTTTTTCTTTGCAGCTTGTCAGCTAGCTAAcGTTAACTTTAGAGCAGCAGGCTTCCGCCCGGGCCTTGCTCGGCAGGCGGCTGTTTTCACCAACGTGCAGGCATTAGATTTGATCATAAGTGATCCAAGAACATTTATCTTTCAGTTTAAGATGAATGTTTTTGTATTTTATGATCTGGGGGACGTGGTTTAGGTTGAGAAAATGAGCGTTGAAATTTAGCATCGTTAAGTGTTTGTTTTAATGCTATTTTATCATATTGCTCTATTTTGTTAAAATGTTCGTTAGTCAAATTGTTTCAGAGCAAATACACTATGAAAATAACCCTTATCTATAACGTTGTAGCTAAGGTGTACACATAACTGTTGCTGTGATGGGCTGTGTGTATTTAGCTTGAATTGACCACTGACCTTGTTTTCTTATGCCCAGTGACGACAACCGAGTGGGAGGCTGCCCCAGCCATGGCTGAGTCCCCGGAGATCAAACTGTTCGGCAAATGGAGCACTGATGATGTCCAGATCAATGACATCTCTCTGCAGGTAAACAGTCTTCCCTATTCTTTGTCTGTAGTGGTTCGGTCTATCACTAACTCAACAATGCTTGGTTGAAAGTTTAAATCACCCCGTTTACCCAACAGGATTACATTGCTGTGAAAGAGAAGTACGCCAAATACCTGCCCCACTCTGGAGGACGTTATGCCGCCAAGCGCTTCCGTAAGGCCCAGTGCCCCATTGTGGAGCGTCTGACCAACTCCATGATGATGCACGGCCGCAACAACGGCAAGAAGCTCATGACCGTACGCATCGTCAAGCACGCCTTCGAGATCATCCACCTACTGACTGGAGAGGTATGGACCGCTAACAaTCACCAAAATATCACCCTCTAGTGTGTACAGCGAGATTAAGGCGGCAAACTAATGGGTGAACAGTTGTACATGAAGTCTCCAACTGGTCCTAAGGGACAGGTTTTCATACACAAGAGCTTCTCATATTTGCATTCTGTTGCAAAGAAAAACTAAACCAAAATTTGAAAGCAGATTATTATTTTTAGCCCAAACAGATTTAACAGGTGTGTATTTTTGCGCTAATTTTACTTGCATAGAACATGCTAATGAGTTGTTTAATATCACTAGTGCCATTAATACAACAAAGAAAAAaGACAACGTCACTGTTCATGATTACAATCTGTTAATAAAATATGTACTTGAAATGGTTATTCCCAGATTTCTAAACATGAAACAATATTAATCCCATCTCTAGTGCCCATTACAGAAGTTAGTCAAACGTGTCACTGTTTGGAGGGACACTAGACATACAGTAGAATCTAGAGCACAACGTAAAAATATTATTTGTCAAAACATTAAGTCGATAACCAAGACTGTCAGGTTTCAGTTGGTAGTCGGTGCTGTCATGGATATCTTTCTGTTTCCACAGGTTTTGCTTTGATATAAATGTCTAATACTCTTCAAATGTTGTTCCCAGAATCCCCTCCAGGTCCTGGTGAACTCCATCATCAACAGTGGACCCCGTGAGGACTCCACCCGTATCGGTCGTGCTGGTACCGTCAGGAGACAGGCTGTGGATGTGTCACCACTCCGCAGAGTCAACCAGGTAACTTTTCTTTTAAAGTCTTGAGGTGTgTTCCATTCAAATGTAGCACAGCAACATTAAACTACCGACGGAAAGTGTTATTCTAGAGTTAATCCTTCATTCACTAATTTGCTGCTCTTTTCTTGTAGGCCATCTGGCTGCTGTGCACAGGAGCAAGAGAAGCTGCTTTCAGGAACATCAAGACCATCGCTGAGTGCCTGGCTGATGAGCTGATCAATGCCGCAAAGGTAAATTAATCCACATAGCGTAAAGTGAACCGTTACTGATAACTAAATCCCTTTCTGATTATGTATTCCAGACAAACGTAAATGATCCTCCAGGACAGTTACTGAGCGTTAATGCTTTGGTGTATGTTAACTGCTAATTATCCTCATTTCAGGGTTCATCTAACTCTTATGCCATCAAGAAGAAGGACGAGTTGGAGAGAGTTGCCAAGTCCAACCGTTAAAGCTCACCGGATATCTGCTCGCGGCGCCTCGAAAAGGCCCTTTTCCGTCTCAGAGAAGTGTGGTTCACTACGGCTGACACAATGACGACAACCGAGTGGGAGGCTGCCCCAGCCATGGCTGAGTCCCCGGAGATCAAACTGTTCGGCAAATGGAGCACTGATGATGTCCAGATCAATGACATCTCTCTGCAGGATTACATTGCTGTGAAAGAGAAGTACGCCAAATACCTGCCCCACTCTGGAGGACGTTATGCCGCCAAGCGCTTCCGTAAGGCCCAGTGCCCCATTGTGGAGCGTCTGACCAACTCCATGATGATGCACGGCCGCAACAACGGCAAGAAGCTCATGACCGTACGCATCGTCAAGCACGCCTTCGAGATCATCCACCTACTGACTGGAGAGAATCCCCTCCAGGTCCTGGTGAACTCCATCATCAACAGTGGACCCCGTGAGGACTCCACCCGTATCGGTCGTGCTGGTACCGTCAGGAGACAGGCTGTGGATGTGTCACCACTCCGCAGAGTCAACCAGGCCATCTGGCTGCTGTGCACAGGAGCAAGAGAAGCTGCTTTCAGGAACATCAAGACCATCGCTGAGTGCCTGGCTGATGAGCTGATCAATGCCGCAAAGGGTTCATCTAACTCTTATGCCATCAAGAAGAAGGACGAGTTGGAGAGAGTTGCCAAGTCCAACCGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00177	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000235	Family	Small ribosomal subunit protein uS7	Interproscan
IPR005716	Family	Ribosomal protein uS7, eukaryotic/archaeal	Interproscan
IPR020606	Conserved_site	Small ribosomal subunit protein uS7, conserved site	Interproscan
IPR023798	Domain	Small ribosomal subunit protein uS7 domain	Interproscan
IPR036823	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11205	RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-