Gene detail

Detailed information of HS00165 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00165	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	chr1	4528565	4532706	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00165

ATGGCCACCGCCAGAACAGAAAACGTCGGCCCGATCGTCATGGGACTGAACAAGCAGAACGGGCAGCTCAGAGGACAGACCAAACCAGCTTCAGTCCAGCCAGCACCCACGGCTCTAGGGAAGGCTCTGGGTGCCCCCCAGATGGTCGGCGGCGCTGCTCAGGAAGGAGGAGGCATCAAGTTTGGAGATGACTGGAAAAAGAACCTCAAGATCCCACCCAAAGACACCAGGGTCCAAACCTCAGTGAGTCCATCTCGATGGCGGCGCGTCTCCTCCGCGTCTCAACGCTGATGTTCTGTCAACCTAACCGCTCTCTGTCTCCTGCAGGATGTGACGTCCACGAAGGGGAATGAATTTGAAGACTACTGTCTCAAAAGGGAACTCCTGATGGGCATCTTTGAGATGGGTTGGGAGAAACCTTCCCCTATCCAGGTATGGCTTTTCCTTTTTTtATGTCAAATTGTATTTACTTGTCAAATTAACCTAATTTGATCAACAGGAGTTATTGAAAATAGCTTAACATATTCTGTGGTAAAGTTTTTTtAATTTAAATGTGAGATCAAGACCTTTtGGTTGGATTAAACCAGTGGTGTTGTAGTTTTCTGGGTATCCGTCCTAACTTCTAAATGACCAGGATGGCACACGGCTATGGCCTGAAGGAGTTTGGCTTGCAAATGTATTGTTGTAATCATTTTGTGCTCCCTATCTTGCGGTAAAAGTaTCTTTGGATTGTCACAGTTTACATCTTTATGAAAAGGTCTGCTTGTGCAATCCAATGTGCACAAGTCCTCATGAGATCTATGTTGCAGCATTGCGACTGCATCAGTCGCAGAACGAGACTAAAGTcATGTGTTCTTCTCCCGGCAGGAGGAGAGCATTCCCATCGCCCTGTCTGGGCGGGACATCCTGGCTCGGGCTAAGAACGGAACGGGGAAAAGTGGCGCCTATCTCATCCCGCTGCTGGAGAGAATTGACCTGAAGAAGGACCACATACAGGGTGAGGCGCTGCATGTGGTTTCATACCGTCGCCCATTCTCTCAACTACCTCCGTCCCCGTGGTCCCTCGTTCATTTGGTTTACTCTCCATCCTCCTTACCCCTCAgTACAATAACTGGACAATCctattatctttttattaccgtcgcattgaaaatgcagaaggttatgttttgatcgccgtttatttatttgtatgcgtgttcctcgcataactaaaaaagtataaaaccagatcgcatgaaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcgatcaggtcaaaggtcaaggtcatgaaaaggtcaacatatttttaccatagcgcggtcaatttgtatccaattggcatgcaactaatgccaaaatgttcataattcaatgcccaatcttgtgatatgcgactgtatgcgctctaccgagtgcccgttctagttttgtaaatgTTTCTACCAGAGACCATATTTGTAACCAGTGCTTTAAAAACAAAATGTATTTTGTATTCCCTAGCACTTGTCATGGTTCCCACCCGTGAGCTGGCTCTGCAGGTGAGCCAGATCTCCATCCAGATCAGCAAACACCTGGGGGGCGTCAAAGTCATGGCCACCACCGGGGGCACCAACCTGCGAGATGACATCATGCGTCTGGACGAGACCGGTAAGAAGCCCACGTGTCCGTCTTCACGGAAAGACAAACGACTATTACaGATACGCGTATTGAATTGTGTTCTCCTTCCCATTTCCACACCAGTGCATGTTGTCATCGCCACGCCGGGTCGGATCCTGGACTTGATAAAGAAGGGAGTGGCAAAGGTGGACCGAGTCCAGATAATGGTGATGGATGAGGTAAACGGGAACAATAAACGTGAAAATAAATCTGCTCACAAGCAGTgTGAAGTCTAATGCTTCTCAATTCTGTCAGATCTTTACAAATGTGCTTCCCaTCAAACTGCCTCCGTTTCCTCTCAGGCCGACAAGCTGCTGTCTCAGGACTTCGTGGTGCTCATCGAGGATATCATCAGCTTCCTGGCCAAGAACAGGCAGATCCTGCTCTACTCCGCCACCTTTCCCATGAGCGTGCAGAAGTTCATGGTGGGTTTCAAGTTTcaggtttttatttgttcgagagcgacaaagaaccttgaacactttaaattaaaatggaaatgcaccgaattacagccgcaaggctgattttcatcgtctgtccccagaatgaacaggatgagtgtcctggaggaaaaggtgcagcagtaatgaactacaaacaattatagtgtaaagctcatgatgcacagcagttcagtcataaaaaaataacaatagattacaaaaagaatctcatacatatataaaagcaacaagagaacatatcccagtgtaatgaagacctttcacgtacgtcataatgcacatcggggctttaattaatgagcacattAGTCGTGAGTCGGCTAATCGCTGCAGCAGCCGGTGGCTCGGGGCCACTTGGCACCGCGAGGCGCCgctgcagcccgagctgcagcccgagctgcTCTCACGCCGACTCCAGATCTGTGTTCTCTGTCGAGAGCCAGCAGGAAGTCATTGTGACGGGTTCAAAGACGTAAAACTGTGTTCTGGAACGCTGACTTGTTAAAACGAAAAACTATACGTGTACATTTGTCTGATATCTGCCGAGTTATATTAAACAGTTAAGAGTTTAATATTCAACTAAACCGACTAGAGGTCCTTCATGCTTGTACCGCTGCAGTGATTCTGCCGTCTTGAGTTTTTAAATGTTTTAAGAgTCACTCTAAACTCTTGTGTCCCCCCCCaccCCGCCTCGCTGCAGGCCAAGCATCTCCAGAAGCCCTACGAGATCAACCTGATGGAGGAGCTGACTCTGAAGGGCATCACTCAATACTACGCCTACGTCACGGAGAGGCAGAAAGTCCACTGCCTCAACACGCTGTTCTCCAGGGTACCTCACCACTTGTGTATATCACCCGCCATGCATTTTACCATTATGTTTTTAATAGTTTAACCTCTTTGTGTTGTACTTAATCATCATCACAAGTGGCAGCATAGTGCAGCCGAGCATTATTAGTCGTTGAACCGTCTAGTTGACCTTCATCCCAGCGTGTGGAATCTAACAACCTGCCACAGTTCCTCTTTTCCAACAGGGAATTGGTCAATTTATCTTTATTTGATCGGAACCGCAGTGATCTATAACATATGCTCTCTCTCCTCCTCACAGCTTCAGATCAACCAGTCGATCATCTTCTGTAACTCCACTCAGAGGGTGGAGCTCTTGGCCAAGAAGATCACTCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGTGAGACGAGACCGACCGGAGGAAATGCAGCGCGGTGACACCTTTGTGACGTTCTGACGTCTCGTTTGTCTTCAGGAATACAGAAACCGAGTCTTTCACGACTTCAGGAACGGGCTGTGCAGGAACCTGGTCTGCACTGGTGAGTTTCTGTTGTGTCCAGCAGATTGTTTTGTTGTGGTTTAAAGCCACAGAGGTCACCGGAGATTGACCTCTTAATTCTTTCCGTAGATCTCTTCACCAGGGGCATTGACATCCAGGCGGTCAATGTAGTCATCAACTTTGACTTTCCCAAGAATGCCGAGACGTACCTCCATCGTATTGGAAGATCCGGTAGGTTGTTTATGATCTGAACGCACAAAGAATCGTCCGCTAGTTTTAATAGAAGTTGTTGAGGTGAAAGCTGGACGTGTCCCCCTGTGGGAGGACTCGAGTACTCCATCTGCACAGTTTGCTCCTCTcTTTGAACATATCTGGATAGTCATCATTCAATGATTAACTCTTAACGTAAACAGATGACATGCATGAGGTGTTGAGAATGTTCCGGACTGCCTTCCCTCAGGGCGCTTTGGTCACCTGGGCCTGGCCATCAACCTGATCACCTCCGAGGACCGCTTCAACCTGAAGTCCATCGAGGACCAGCTGGTGACCGACATCAAGCCCATCCCCAGCAGCATCGACAAGAGCCTCTACGTGGCCGAGTTCCACACGTCCGGCGACGACTGCGAGGCGATCGAGGAGAAACCGGGACGCCGACAGGACCGtGCCATGGCCACCGCCAGAACAGAAAACGTCGGCCCGATCGTCATGGGACTGAACAAGCAGAACGGGCAGCTCAGAGGACAGACCAAACCAGCTTCAGTCCAGCCAGCACCCACGGCTCTAGGGAAGGCTCTGGGTGCCCCCCAGATGGTCGGCGGCGCTGCTCAGGAAGGAGGAGGCATCAAGTTTGGAGATGACTGGAAAAAGAACCTCAAGATCCCACCCAAAGACACCAGGGTCCAAACCTCAGATGTGACGTCCACGAAGGGGAATGAATTTGAAGACTACTGTCTCAAAAGGGAACTCCTGATGGGCATCTTTGAGATGGGTTGGGAGAAACCTTCCCCTATCCAGGAGGAGAGCATTCCCATCGCCCTGTCTGGGCGGGACATCCTGGCTCGGGCTAAGAACGGAACGGGGAAAAGTGGCGCCTATCTCATCCCGCTGCTGGAGAGAATTGACCTGAAGAAGGACCACATACAGGCACTTGTCATGGTTCCCACCCGTGAGCTGGCTCTGCAGGTGAGCCAGATCTCCATCCAGATCAGCAAACACCTGGGGGGCGTCAAAGTCATGGCCACCACCGGGGGCACCAACCTGCGAGATGACATCATGCGTCTGGACGAGACCGTGCATGTTGTCATCGCCACGCCGGGTCGGATCCTGGACTTGATAAAGAAGGGAGTGGCAAAGGTGGACCGAGTCCAGATAATGGTGATGGATGAGGCCGACAAGCTGCTGTCTCAGGACTTCGTGGTGCTCATCGAGGATATCATCAGCTTCCTGGCCAAGAACAGGCAGATCCTGCTCTACTCCGCCACCTTTCCCATGAGCGTGCAGAAGTTCATGGCCAAGCATCTCCAGAAGCCCTACGAGATCAACCTGATGGAGGAGCTGACTCTGAAGGGCATCACTCAATACTACGCCTACGTCACGGAGAGGCAGAAAGTCCACTGCCTCAACACGCTGTTCTCCAGGCTTCAGATCAACCAGTCGATCATCTTCTGTAACTCCACTCAGAGGGTGGAGCTCTTGGCCAAGAAGATCACTCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGAATACAGAAACCGAGTCTTTCACGACTTCAGGAACGGGCTGTGCAGGAACCTGGTCTGCACTGATCTCTTCACCAGGGGCATTGACATCCAGGCGGTCAATGTAGTCATCAACTTTGACTTTCCCAAGAATGCCGAGACGTACCTCCATCGTATTGGAAGATCCGGGCGCTTTGGTCACCTGGGCCTGGCCATCAACCTGATCACCTCCGAGGACCGCTTCAACCTGAAGTCCATCGAGGACCAGCTGGTGACCGACATCAAGCCCATCCCCAGCAGCATCGACAAGAGCCTCTACGTGGCCGAGTTCCACACGTCCGGCGACGACTGCGAGGCGATCGAGGAGAAACCGGGACGCCGACAGGACCGtGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0010494	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan
GO:0034063	Biological Process	stress granule assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-