Gene detail

Detailed information of HS00161 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00161	APOLIPOPROTEIN	chr1	4507080	4509970	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00161

ATGAGGGTCTTCGCTGTAATCCTCGCGCTGGCcGTCCTATCAGGTGAGTCCACAACGTCTTCTTCTTATCATGAAAACACAGTCAGCAGCTTCATTTAGTGGGAGAAGGTGAAAGATCTCAGACCGTATGAACTATACCTGTACGAATACTAGTGTCAATGATACAGTGACAATACAAATGAGGCCAAAGGAGCGATTACACGTTGGTTCTGAGCAGTATGTGCAGGTATAACATCTAACATCTGTCTTTGGACTCCTCGGTGTCCGTGTGGTCAgaaaatgtctcacaagttttgtctgaagtgaatatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctccgtctccacgcaggcggccatgccagaagcgtgtCTCAGGCCGAGGGCCCGATGCCCTGGGAGGAGGCGGTGGACCGCTTCAACGACTACCTCACGGAGCTGAACTCCATGGCCGACGCGGCGGCGACGGACGCCCGCAGCTCCCAGATCAGCCGAGAACTGGAGTGAGTTCAACCGTGGCGCGTGAAAAGCTGTCAGAGTGAGACATCGGTTCATTTGCACCTTTGACCTTTGAGTGCATATTTAATACCGTCTGCTATAAACACCCAGAACGGCTCTAAAGGActcatatgtggatacatgtgatatatattgtcatatgtggatatacatatatatttggacatatatggatatagatttggtcatacgtggaaatatatgtatatatacatataaatatttacatatatatatatacatatatatatatatttggtcatatgtggagatatatatatatatatatatatatatttgttcaaatgtgtatatatatatgtatatatatatttggacatgtgtatatatactgtatatactgtatatatatactgtatatatatattgtcatatgtggatatacacatatatatatacaggactgtctcagaaaattagaatattgtgatgaagttctttattttctgcaatgcaattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactcaaatatcctgtatatatccaaatatgaccaaatatatatatatatatttggacatatgtggacatatatatatatatatatatatatatattcggtcttatgtgtatatatatatatacatttgatcacaagaggtaaactagggctccctctaaaCTGTGACAAAGACCCTCACGTATCTGACCTTTGGCCTCCTTGTCCGACCTGTACGTTGGAAAGCGTCGACATGATGTTGTTTCCAGACTTTTTGGTTACACAACACACATTGTGTCCTCAGCTGAGTGCGAGGAGGTTAATCATCAGCGTGTGTGACACACGTGTGGAGCTGCTGACTAAGACCTGCAGTGCACCCTGGTCTCAAGTCCACCgCCACGACTCCTGAAGTGGACTTCGATTGGTGCGGACCCACCAGCCACTATGGAGCCTTCTCTCAACAGTTCAAATCTTCAAATTGATTTCTAGGACATGAAAAGATACTTGTACATGTTCAATAAAGACCTTTGGTTGATCTTGAACCCCTTTGCCCCCCccacacacacacacacacacacCTCCAGCAAACTGATCCAGGACAGCATGGCCGAGCTGGACAAGTACAGAGAGGACCTGAAGACCAAGCTGGTGCCCTACACCATGGACGCCGCaAATAAGTTGTGCCGAGACGTGAAGGAGCTGAGCCAGCGACTGGGCCACCACATGGCCGAGGCCCGGGACCAGATGGAGAAGAACAGCAAGGAGCTGCAGAACGTGATGGAGCAGAACATCGAGGACGTCCGCTACAAGCTGTCGGCGTACACCCGCAAGTTAAAGAAGCGCCTCCAGAAGGACACGCAGGACATCAAGAGGTGAGGGGCACCCACGGGAGGGGGGGGGGGGACTCCAGGTCCTGAATACTAAGTCACGCTTTAATGGACGCacacgaaagttcagaagtttgggctcacgcagacaattcggtgttttccatgaaaactctcacttttatttctcaaattaattgcaaaatgaatattaaatatagttaagacattgacaaggttataaataatgttttttattgtaaatattaatgttgttcttcttgtggctcaaaggaaggccagttttatggcttctctcaccagcataactgttttcagctgcgctcacataaaaagggttttacagggttttctacccctccgctagtcttctcaggcgataacacaatgtaccattagaacactggagatgggcctccacacacctctgtagagacttcactaaacaccagagaatagtcatttacatattaactatgtagagatagtatttatgatcttatcttctatcttcattgataaaaacagagctttactttgaagaataaggacatttctaagggacaccaaacctttgaacggtagcataTGTCATACATCTCTTGTATTTGAGTGTTTCTCCTTCCGTCCTCGTCTCAGACACGTCGACAACTTCTTCTTCGAGGTCCAAGCCGGCGCCTCCAACACGCTGGAGGACGCCAGGACGCGCTTGGACCCGTACTTCGCTCGGGTGCGTGACAACGCCTGGGACAAGATGGCCACGCTGGGCGAGCTGATTAAGGCGCAGGCGGAGAACGTGAAGGACAAGATTGAGACCGCGGCCGAGGACATCAAGGtTCACATCGAGAAGACCGCCGAAGACGTGCGGTCCACCCTGGAGGACAAGATGGAGGACCTGAAGAACTGGTTCCAGCCCTTGGTCTCCAAGGTCAGCGGGAGCAAGATGAGGGTCTTCGCTGTAATCCTCGCGCTGGCcGTCCTATCAGgcggccatgccagaagcgtgtCTCAGGCCGAGGGCCCGATGCCCTGGGAGGAGGCGGTGGACCGCTTCAACGACTACCTCACGGAGCTGAACTCCATGGCCGACGCGGCGGCGACGGACGCCCGCAGCTCCCAGATCAGCCGAGAACTGGACAAACTGATCCAGGACAGCATGGCCGAGCTGGACAAGTACAGAGAGGACCTGAAGACCAAGCTGGTGCCCTACACCATGGACGCCGCaAATAAGTTGTGCCGAGACGTGAAGGAGCTGAGCCAGCGACTGGGCCACCACATGGCCGAGGCCCGGGACCAGATGGAGAAGAACAGCAAGGAGCTGCAGAACGTGATGGAGCAGAACATCGAGGACGTCCGCTACAAGCTGTCGGCGTACACCCGCAAGTTAAAGAAGCGCCTCCAGAAGGACACGCAGGACATCAAGAGACACGTCGACAACTTCTTCTTCGAGGTCCAAGCCGGCGCCTCCAACACGCTGGAGGACGCCAGGACGCGCTTGGACCCGTACTTCGCTCGGGTGCGTGACAACGCCTGGGACAAGATGGCCACGCTGGGCGAGCTGATTAAGGCGCAGGCGGAGAACGTGAAGGACAAGATTGAGACCGCGGCCGAGGACATCAAGGtTCACATCGAGAAGACCGCCGAAGACGTGCGGTCCACCCTGGAGGACAAGATGGAGGACCTGAAGAACTGGTTCCAGCCCTTGGTCTCCAAGGTCAGCGGGAGCAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01442	Apolipoprotein	Apolipoprotein A1/A4/E domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000074	Family	Apolipoprotein A/E	Interproscan
IPR050163	Family	Apolipoprotein A1/A4/E	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18976	APOLIPOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0006707	Biological Process	cholesterol catabolic process	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0034363	Cellular Component	intermediate-density lipoprotein particle	Interproscan
GO:0042157	Biological Process	lipoprotein metabolic process	Interproscan
GO:0042159	Biological Process	lipoprotein catabolic process	Interproscan
GO:0043524	Biological Process	negative regulation of neuron apoptotic process	Interproscan
GO:0051000	Biological Process	positive regulation of nitric-oxide synthase activity	Interproscan
GO:1900221	Biological Process	regulation of amyloid-beta clearance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-