Gene detail

Detailed information of HS00150 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00150	SODIUM CHANNEL SUBUNIT BETA-1 AND 3	chr1	4370228	4376326	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00150

ATGGCGGCATCGAAGCTCCTGCTCCTCACTCTCCTCTGCAGCATGTTGGGTGAGTTGAGCTCCGACCTCGTGGCCTTTCAGGATGTGTTGCGGCGTCGGGGTCAAGGTAGTGAGTGCTTTTTCCTTGCAGCATCCTGCCGCGGCGCCTGTGCAGAGCCGGACTCTGACACGGAGGCGGTCGTGGGCAAGGGCTTCAAACTGGGCTGCATCTCCTGCAAGAAGAGGAGTGAGGTGGAGGGGACCGCCACGGTCGAATGGCACTTCAGGGGCAAAGGAGAGGAAGACTTCTACCACGTAAGTGTGCAAATCATCCGCCCCGGAGGGGATTCCTGAATGTGGTGCCGGCGTGAAAACAAAGCTGACGCAGCACATTTGTGGAGCACAGGAAGTGTTCGTGCTTTCAAAGGAGTTTAAATCAAGTGTCCTTGAGACACAGGCTTTGTGTATATGCATGCATCTACAGTCCACACCCAAGCTgTATGAcCCCCCCCCCCCTCTCTCTCTCTCACACACGCCCTCCATCACATCATAGAGCTCAGTGTCGAGGTCATGTTGATGTTCAGAGGCAATCAATCGTGATATGTTGTTACAGAGATGACATGGCCGTGTTGACCTCATTCTCTGTTTgTACCCTATGGTTTAAACcaggcctattcaactcgcggcccgcgggccggatgcggcccgtttgagtttaactacggcccgcaagactgcctgcaaatcagtatagcttggtaagaaaaaataaaactgacggacacgcctcttttatacattgagacatctaacccagagccattgagtttcactgttgcctcaaccaaacctgtatggttacatctttatgttacgcacccgtgttGgttgccgttgttacacccctactggttttcaaacctactggtttccctgcgcgtgcgttgtgttctcttaacatctgcagcggggctctgtctcgctcaccagattcgtcacacattcacaaacatattgctggagatcttcaagcctccgttcatatccatttgggcgattacgattgtataagtgagcagtgcatcacagccacggatgaagaaatacattttcgaaaaaataaaaataaaaagatcgcccgacctggtttcgatccctttcacgcaaaatgagtctgcactcaaagacacgcagtctgtgcgctgcgccaccagatattagtttcatcccaagtcatttatatattggcggctgtagctcagtggggtaagagggccgtccttcaaccgtaaggttgtgggttcgatcctcgcttagttgcaagttgaagtgtccttgagcaaggcactgaacccccagttgcttcccgggcgcttcaccgcagcccactgctccttaataactaaggatgggttaaatgcagagaactaatttccccttggggattagtaaaagtgtatattattatattgatccattaagtcacatttcttatgttttcatgggaacagtttggttgaagggatctgaaacaactggttaccttgagcagatatttacactttgaaacatgtttatagtaatgcttgtttgcaacacttttgccacacaataccgacgcattttcgtgtgtgactgtttacctgtggaaatatacatgactgtttttaatttttagccattatttgatcaatattctgtgcggccctcacaccccccgtgattttcttattcggcccacttactactgaagttgaatagccctggtttaaaCTCATATATACACATGTGTCATCTGGTCTCTCCTAATATCATCGtatatatatatatatacaccgtatatttaaaaatgaaaaaacagcctatatattatatatataccgtatatttaaaatagataccgtatatttaatatatatatttatatatatatatatattatgtatcttatatatactatatatagtgtatattatatatatatgatatatataaatgtatatactatatatataccgtatatttaaaatatatatatatacgtatatatatatatattatatatactatgaatataccatatacaggactgtctcagaaaattagaatattgtgatgaagttctttattttctgcaatgcaattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactcaaatatcctatctctaaatattagaatatcatgaaaaagtatactagtagggtattaaacaaatcacttgaattgtctaattaactcgaaacacctgcaagggtttcctgagccttgacaaacactcagctgttataaatcttttttttacttggtctgaggaaatattaaaattttatgagataggattttagagttttcttaagctgtaagccataatcagcaatattaaaagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgtttttttaattgcattacagaaaataaagaacttcatcacaatattctaattttctgagacagtcctgtatgtcatacatatatatatattatacagtatataccgtattttttatatatatattatatatacatatatatatacagtataaatactgtatatatacagtatatatatatatatggtataaataacttttaaataatgaatacaacaaaagaaGAAAGTAAGGAAATTCAACTGAAAAACTATGATATACTGTATAGTGCATAACAATACCCAGAGGCCTCATATGTGTATGTATACATCACAGCAGCATCTTTGACTGACCCTGATTGTCTCTGTGGCACCAGATCTACACCTACACCGAGCGAGGCCCGACCATCGAGAGCGACAACTTCATGGATCGGGTGGATTGGAACGGAAGTAAGAGGAGCCATGACATCCAAGACGCGTCCATCTACCTGCTCAACGTCACCTACAACGACTCGGGCACCTACCAATGCTTCTTCAACCGCATCCTCTTCTACACCAACTACGAGTACAGCACCGTTGTTACGAAGGTGGTCGAACTCACCGTGGTGGCTAAAGGTATCGGCGCTGTGCGACCGCCTGGTCTGAGATAGGAGAGCAGATTGCATCACAAGCAGGATTTGTGGGCGTGGCCCCCCGATCTCGTCTCTGCACCACGAGCGGGTCACATCCCATCTCCATTGACAGTGATTCAGCTTCTTGGTTATATTGTGTGCTGTTTCCCTATAAaataatggttttcaaccttttttgacttatatagaaccccctgtgaaatatttttttcagccgagaaccagtgcaaagcattttgggttgaaaaacatatgtaatacgcagcattttacatataatatatacaattaagttaatgaacttacttatatttttattgaatatttatgaaacaactatttttaaaggctttttttatggatgctaattttaaatatatttaaaacaaatctcacgtacgcccctgtagagggccttcacgtcccccccagaggtccacggacccccacttgagaaccaatgCTATAAAATCACACAGTCAGCACATGTTGTAATAATACATGGCACAATCTTCATTTCCTGCACACGTGGCGAGCCTATAAGACCTCCATTTACaGAGGAAAATCGCAAGAATTCAATGTAAGTGACTCGAAATGTGATCTGTGGAGTTTGAGATCTTAAAGATGAAGCATCGGGATGAAAGGTGACGATGACTCACAGGTAGCCTGAACACAATCCCAGAGGGGGCTCCTGAACAATATGAAATCAGGAAGAATATAATGCAGTGAGTAAGTTTTTTTCAGCCAGACAACAAGAGATCAGCTGTaCTCTCTCCAGGGCTTCACTTTGGTTTTTTGGTTGTTTGTCTGATTTCTTGATTCCGTCGTTGTTCATGCGTGCAGCCACCAGAGTGACGGCGTCCATCGTGTCCGAGGTCATGATGTACGTGACCGTCATCGGCCTGCAGGTCTGGCTCCTCATAGAGATGATTTACTGCTACAAGAAAATATCAGCGCACGGGGAAGAAGCGATACGAGAAGCGGCGTAAGTGTTTTGTTTCTTTCTTGCGTACGTCTGTGTGCacacaatcaACACAATCAACTCGTTACGTGAAAAAACCTTGTAACTCCAATTaTGCAATTTTACATTTATTGAAGGATTTTACAGTGCTTTAAAAAAAATTGAGGGATTCTTTCCTTAACTAATACAAATTCCTGAGTGTTCAAGCCAAACACTTGGACACAATTGTTTCGCTTGAAAAGCAGAAACTTTGGAGGTACACGGTTTTTATCCGAATAGCATCGAAccctttcacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgttgttgagtccaaacaaagtgctggattcttAAGGCAAATACCTGCATAAATATTGAAGTCTTACAAACAGAATTCCAGTAACGATAAATCACAACATAAACACACATGATTATTGATCAGGCTACCTTAAATTGGGTTGTTAAAGATGTGTAGCTAAGGCCTACTGAGCAGTAGCCTACCGTTTACTGTTAACTGTGTAATGGAAGCACCGTTTCTAAATTACCTCAAATATATCTGAAGCACTTCCATGTTGTTTGTTACGaGCATTTCCGCACGTTTGTGGCTAGCATTTACGCCGCTACTGATATATTGGACGGGCTCAAAGCTTGAAACAACAACACAACTGGAGTATGACCACGAGCATTTgAAACGCCTGCATCCAATTCATTCCAACGTAGCCGCCGTGATTTGTAGATTTACTCTCGGCGCCAAAGGCTGCGCGGACAGAGTCGGAGAGGAAGCTATGCTAGCTCACTAGCTCACTCGTGCTGCATGACTACGCGCACGTTTTCAAAGCCTTCGTGCTTTTAAAATGTCAGTTGCTTACGTCATGGCATCGAGTACACCTCTAgAGGATCATTACTCGCACtCACGCAACaGCGATGTGGTTATTTTACTGCCTTTCTGTAACTTTTTTTGACGAGAACCAGCGCGATGCTAACTTCCTGTAGCACTCTAGCTCCACTTTTCTTTACCCTTCAGCCTGTCTGCTCCACCAAAGTCGAGATGGTTTGTGGTTTTGAGGAGTCGACGGTACAAATATGTCTCTTGAGTACGAGTTAATTTAATGTCCTGTTAGCTCGTCGGTTACCCAGGTAACCGACAACTTGCTTAACTGACAGTTAGCAAGCTTTTTGGAGGGAACACTTTTTTCTCTCCCTTCAGTGAATGtaagaatgaaatacaaaataataatagaaaattaaaaagaaGCTTGACGAGTAATTGTGAGGGACTAGCAGTAGTGACTTAGCCTCCTAGCTTATTAGCAGTTAGCGCACCTCAAGCGGTAAGTATTCGCTACATCACCACGCTTCAACGGAAACATCTGTTTCTGGTGCGACTCGGCCGTTACTCTAAAAAACAACTTTATAAATCACTTGCATGTTAGAAATGACAATAATTTAGCTTTGAAAAGTGTGTATTTCTCCATGAATGCTGCTATATGTTATTCATGCTGTATTGCTGTGACGTCACACCTTTCATTTTAAAATGTTTACTTGGTTACGTCCTCTCTTTGGTTCATATTACTCTCCTCTTCTCTATACCCGTCCTCTTACAGCACTTATTTAGAAGATTATCAATGTTTCCATTTAGTTTGTGCCTTTTCACTTGtgtgtgtctctttgtctctgtctgtttgtcatgtttccgtcttgtccgtcCCATCCTGTCATCCTCCTCTCTAGTAAAAACCAAAACCTTCCACCTGTAAGTCCAAAAAAAAGGAACAGAAATCTGTCATAGCTGTGATGTGTTTTTGTGTTTTTGCATTTTTAACCCATTTTACTGTGCTCAAATTAGACGTTTGTCATCGTTTCACAACGTCATTTCGTTTCTCTTTCTCTCCTAGAAATGCTGAATATTTAGCGATAGCCTCAGAAAGTAAAGACAACTGTGCGGGGGTGCAGGTCGGAGAAATGGCGGCATCGAAGCTCCTGCTCCTCACTCTCCTCTGCAGCATGTTGGCATCCTGCCGCGGCGCCTGTGCAGAGCCGGACTCTGACACGGAGGCGGTCGTGGGCAAGGGCTTCAAACTGGGCTGCATCTCCTGCAAGAAGAGGAGTGAGGTGGAGGGGACCGCCACGGTCGAATGGCACTTCAGGGGCAAAGGAGAGGAAGACTTCTACCACATCTACACCTACACCGAGCGAGGCCCGACCATCGAGAGCGACAACTTCATGGATCGGGTGGATTGGAACGGAAGTAAGAGGAGCCATGACATCCAAGACGCGTCCATCTACCTGCTCAACGTCACCTACAACGACTCGGGCACCTACCAATGCTTCTTCAACCGCATCCTCTTCTACACCAACTACGAGTACAGCACCGTTGTTACGAAGGTGGTCGAACTCACCGTGGTGGCTAAAGCCACCAGAGTGACGGCGTCCATCGTGTCCGAGGTCATGATGTACGTGACCGTCATCGGCCTGCAGGTCTGGCTCCTCATAGAGATGATTTACTGCTACAAGAAAATATCAGCGCACGGGGAAGAAGCGATACGAGAAGCGGCAAATGCTGAATATTTAGCGATAGCCTCAGAAAGTAAAGACAACTGTGCGGGGGTGCAGGTCGGAGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR027098	Family	Sodium channel subunit beta-1/beta-3	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10546	SODIUM CHANNEL SUBUNIT BETA-1 AND 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001518	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0006814	Biological Process	sodium ion transport	Interproscan
GO:0017080	Molecular Function	sodium channel regulator activity	Interproscan
GO:0019871	Molecular Function	sodium channel inhibitor activity	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:0086002	Biological Process	cardiac muscle cell action potential involved in contraction	Interproscan
GO:0086091	Biological Process	regulation of heart rate by cardiac conduction	Interproscan
GO:2000649	Biological Process	regulation of sodium ion transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-