Gene detail

Detailed information of HS00109 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00109	60S RIBOSOMAL PROTEIN L11-RELATED	chr1	3461401	3466041	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00109

ATGGCGGTGAGTACTCTCTCACACCGTACGATGGTGATCACACACGAAGTTGTAGTTGAAATCTACAATCATCGGAGCGGTTGGGCCATCTTAAGTGCTCTTTTACGTACAGAGACTCAAACTCTAACATGAATAATTAACATAGAAGCTTATTTCTGTACCAAATGAAACGGAAGGCAGTTTAACCCAAAACAAGCTAGTGATGCTAACGGGCTAGCTCCTGGGATATGCGGTTCTCGTACGATTGTAGTAATATTCAGCCGTTAAGGACAACGTTGCAGTTGTATAATTACTCTAAGCCTACACAGCAAGCATGTTTGTATTGTTTTTCTAGTTGTCTAAAAGTGTAAATACCTCCGGACACGTAACGTTTGTATCTGACTGCTAACAGCAGTAGCGGCGCGGATATGTCCGGACATGTCCTCACGGCATGTGTTGCTCCCAGACTGTTATTGAGATGTAGAGACGGAGGAGAGCAGGGGCTGGACTTGTGGTTTTATAGACTTTATCATTAACGTGTGACTTTTAACCTGAAGcTTACCGGTGGTGTTGAAATGGCCACTGATATCTGTCTAGccggtgttacggttcaacctgagtccctgttaactggcgaccttcggtcgaatgcgtctgttgttgtcgtagttacggcagatgttgataatagcaggagaacacgcagctgtcctcgcgaatgccgcaatgtttaGGCCAGAAATGGTCATACATGTACAAACATTACACCCATATGTGATTGTTTACCATCTGTCATATTTAAAGTAAACTCAAGAAGTGACCTGAACTGTTTGACCTCTCTGTGTTCTTGGCTGGTTGAATTCTTAATTGTGTGGCCAGCCAAcAACACAGAAGTCAAACAGTACAGGTCACTTaTTTACTTTATTTAAGTGGCATAAATCACAGACACAATAAGGCAAAGTAAATATGACAAACTTAATGTGGTCAATGCCCATGGTCTATGGACAGATGGTAAACAATCACATATGGGTGTAATGTTTGGATATTCATACGACCATGTCTGGCATTATTGTCCACATTGTGTATGTTTACCTCATGACAACAACACAAACATTTCCTCATTAATGTGCAGCCCTTTAAAGACGTTTTTAATTGAAACGGCTGAATATTAGTTTGAGAAGCcATCACTATTGTAGAGtGCTCCTTCGTTCACGTCAACATGCTCCATGGTGGTCGGCAGTGTGTTGGTCACAAGTTGATCTGGTGGTTCTCTGCCTcTCGTGGTGACCAGTGACCGCAGTGCAGGTTATTTAATTGTGCGAACAGAGTAaATCGTGTCGCTCTTGGCCTAGTGGTcAGATCCCCGTCAGTTAAACTTTTTTCCTCCCAAAGACATGAGTTCGAATCCcGTAACATCtTTATATATATttgttgttgtggtttttgtactacagagttatgctacgtgatacatgtttgcacaaaacagactcccaattgtatgttgattaagtgtttatttatttgaccaaatgtatttcaaaggaagggcagtttgctaacttcctgtttcaaccataaacaacacgcgacgcttcaagtcgctggacgctttctcttctccatcgtctcctccggtatgttcagaccagacacgacacgagaaggtttctcattgcattgtagaactaaacaatgcggcattcgcgaggacagctgcgtgttctcctgctattatcaacatctgccgtaactacgacaacaacagacgcattcgaccgaaggtcgccagttaacagggactcaggttgaaccgtaacaccggCGCTGTCCTGAAGTCACGGCGGTGGCAGCcGCGGCTGACGCGGCGcCCCAACTCTCCTGCAGTCATTTAGTCTCGTGTGACTTCCTCGTGTGAACCGTTCGTCTTCTGCCCCGCAGGAACTGGGCGAGAAGAAGGAGAACCCCATGAGAGAGCTTCGCATCCGCAAGCTCTGCCTGAATATCTGCGTCGGTGAGAGCGGAGACAGACTGACCCGAGCTGCCAAGGTGCTGGAGCAGCTCACCGGCCAGACCCCCGTCTTCTCTAAGGgtgagtgtgtgtgtgtgtgGGGGGGGGGGGGGGGcGACAGACTTTGAGCTGTGGAAGTGTAGAATTTAAGACTTTTGAGATGTCTATTCAACACCATGAGAAAAGCTTATTTATACACATTACTCTGACTTAAGAGTGGGGAACGGTcGCGGTGGTCTGCTGATGCTctgtaactacaatgtcgtcggttcgatccccgctctccccattagttgcccgtcaaagtgtccttgagcaagacgctgaacccccagtcgctcccatggtgcttcactgcagcccactcctcctgaataactcaggatgggtcagatgcagagaagaattcccccacggggatcaataaaggATTTATTAAGTTGTCGAAGCATAAAAGTAATCGTGTTTGACATTTCTGTCCCGTTTTCTGTTTCTCAGCCCGCTACACTGTGCGATCCTTCGGTATCCGCAGAAATGAAAAGATTGCTGTCCACTGCACCGTCCGTGGAGCCAAAGCAGAAGAGATCCTGGAGAAAGGACTCAAGGTCAGAAAGCCGTGTTTACTTCTGATTCATGTCCCACTAGTTCAGTGTTTCACTGGTTCTTCATTGGCTTGTGACTTTGCTGCAGCTTTAAAATGTGGATTGAATGAAGGATAATGTTGGTGTTGGACTTTGTACTTTCAATGTCgCATGAACGTAGAAAGTTTATAGTTTGTCATTTTAAAAACTATATTTTCTTGTACTCTGGCTTGTTTGTTGACTGTTAGatctagCATGATCAACTCTTTTCTATGTCACGCTCTGGTTTTTTCAcATTCGTGTTATCAATTGTGTGACGATGTAgCTTACGGTTGCTTCATGTTCCAGGTGCGTGAGTACGAGTTGAGGAAGAGCAACTTCTCAAATACCGGAAACTTCGGCTTTGGTATCCAGGAACACATCGATCTGGGTATCAAGTATGACCCCAGCATCGGCATCTACGGACTGGACTTCTACGTGGTGAGTGGCCCAAAACCAGTTTCTCTCCCGCTGTAAAATATGGACCCACGCAGAAATGAGTTTTTGTTGAAATAGTCGAGAAGTGATGAAGTCCATACAGAGAATGAGGTGTTTTATGAAGTAAGAATAATTTATTGCTGAATATTTGCCACGTTACATTGATGGTTTTGTTAAGGGTCGACTGTAAAGTGACGTGATTTGTGCGTTACACATTAAGATGATTCAGTTTATTTTACGTATAGGTCGTTGACTTACACCCGGCACTTCTTCCTCAGCAACAGAAGATCAGATAAAGGCTGTTTGTCTGGTTTTTTGGTGAATATTTTATATTAGTAAAGTTCAAAGATATAGATATCAAAAGAATACATGGCCAAATATAAACAGTTTTGTCTCTTCATCTCTTCATCATTTAAATAATGTATCCTCTAAAGcagcgtttcccaaactcaagaatgccgcggcccaatttgaaatctgaaaatcttctgcgacccacccaagcctttaatcacaaccagcgttgACGACGCGTTGACGACGACGGGGGGTGTGctagtgagagtgttcacctgtgtgcgcggatgtgtcggcgcgcatcacggcagagcgatgcgacccgagacgggttaacggggggggggtgctgagcgattaaatataactcttgttctgcctgttttgtgatatacatgcctaaaaggcgcctaatatttctagactgaaataatatcggcattattataactgaggattttttgagttgcctattttgtggcgccccctcaggacttggtgccctacgcgcagcgtgtagtgcgcgctatgggagcggcggcgctgatcacaactctgatcaaaacataaactaatcctacaagagggcgccccatttgacattgttttgtttggcggtcagaaaaataggtcagataaaagaataacacgtcatttaaatcataaatatttgtatattaatttcaaacttttcaaaattgaaaattaaaaatattttatttatttattgtaaatgacctctcgcggcccacctgcagtacactttgggaatcgctgCTCTAAAGATTTAAAGTAATTTCTTAGTTGCAGCTTCTCACATGTAAAGAGATGATTTATTTTTTAATTGAAGTCCAGAGGCCAGACTTCAGTGACGCTGCTCGTGTTCGTCAGACGGTGCTGAAGCGTTTCTGACCTGCTGTCCCGTCTCTCGTGTTCAGGTTCTGGGCCGACCCGGCTTCAGCATCGCCGACAAGAAGCGGAAACGAGGCCGCATCGGTTTCAGGCACCGCATCCGCAGAGAGGAGGCCATGCGCTGGTTCCAGCAGAAAGTGAGTGTTGGCATCCTGAGACGCCTGGACATTTTCTACTGGCTCTCCAGGTTTtACTAGAAGTTGATATAAAAGTTACCCCAAATGTTTTTGACAGAGTTGTAAGCTATGTCATGATTTAATTAGATTTACGGcATTCTCTCGCTTAATATCGACTCTTTTGGtttcatgtttttattttttgtcttaaaatctaatattcttttattctttctttCAGTATGATGGTATCATCCTCCCCGGCAAGATGGCGGAACTGGGCGAGAAGAAGGAGAACCCCATGAGAGAGCTTCGCATCCGCAAGCTCTGCCTGAATATCTGCGTCGGTGAGAGCGGAGACAGACTGACCCGAGCTGCCAAGGTGCTGGAGCAGCTCACCGGCCAGACCCCCGTCTTCTCTAAGGCCCGCTACACTGTGCGATCCTTCGGTATCCGCAGAAATGAAAAGATTGCTGTCCACTGCACCGTCCGTGGAGCCAAAGCAGAAGAGATCCTGGAGAAAGGACTCAAGGTGCGTGAGTACGAGTTGAGGAAGAGCAACTTCTCAAATACCGGAAACTTCGGCTTTGGTATCCAGGAACACATCGATCTGGGTATCAAGTATGACCCCAGCATCGGCATCTACGGACTGGACTTCTACGTGGTTCTGGGCCGACCCGGCTTCAGCATCGCCGACAAGAAGCGGAAACGAGGCCGCATCGGTTTCAGGCACCGCATCCGCAGAGAGGAGGCCATGCGCTGGTTCCAGCAGAAATATGATGGTATCATCCTCCCCGGCAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00281	Ribosomal_L5	Ribosomal protein L5	Domain	Interproscan
PF00673	Ribosomal_L5_C	ribosomal L5P family C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002132	Family	Large ribosomal subunit protein uL5	Interproscan
IPR020929	Conserved_site	Large ribosomal subunit protein uL5, conserved site	Interproscan
IPR022803	Homologous_superfamily	Large ribosomal subunit protein uL5 domain superfamily	Interproscan
IPR031309	Domain	Large ribosomal subunit protein uL5, C-terminal	Interproscan
IPR031310	Domain	Large ribosomal subunit protein uL5, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-