Gene detail

Detailed information of HS00044 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00044	SMAD	chr1	990482	999420	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00044

ATGGACCTCCCGCCTGGCATGCCTCTGGCCGACCACCAGGCGGCCATGAAGCTCCCTCCTCCAGACCACTATGGCCAGCTGTCCTCTGAACCCCACGGACCCCCACCGGTCACCCGATACACCAACCTGCCCGTCTCACCCAAAGGTCTGTGTTCAGTGCTGAATGGCTAGCGGACTCCTGATGGTTTATACTATTTACTCCATTACAGTATAGAAAACCACTGGTAGTGTTTCACATCTGTCCCACTTAAATGCATCGCTGTAAGCGGATGGTTATTAAAACCAAATAGTTATTCTgtttcctaattaccgtcgcattgaaaatgcggaaggttatgttttgatcgccgtgtatttatttgtatgcgtgggtgcgtgttattcgcataactcaaaaagtatgtaaccgaatcgcatgaaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcgatcgggtcaaaggtcaaggtcatgaaaaggtcaaaatcttctttttaccatagcgcgcggtcaatttttatccaattggcatgcaactaatgccaaaatgttcataattaaatgcccaaacttgtgatctgcgaaggtatgcgctctaccgagtgcccgttctagtttctcatgcagatcttgttatgtttatatttATAACATGTAACATAGTAAGGAAATGGACAATTTAGCTATTTTTGTATTGACTCAAAATACAGTACAGCAATTATTCAATAATGTGTCATTTAGTGATTTGCAACCTGGGGCGAGACGGGTTAAGGGTCACTCACAACAGGCCTGACTGGTTCCTCTGACCTCTGACCCCCTCCCAGTGTCGGGCTCCGGCTCCATGCTCCCGCTGCAGGGCGGCCACGGTGACGGCCGCCTCCAGACggcgtctccacaggcgtctccacaggcTCAGGTCATgacctcggcgccgcgacctccgaccccgacccagcccccTCCTCAGCAGCAGGCTGCCCAGCAAGCCTCGCAGCCCCCCCACCCACAGCAACCCCTCCTGCCTCCCCCCCACCCGGACGGCCAGAACGGCTACAGCAGCAGTAAACACGCTCAGAGCCAGGCGGCCTTCCACAGTGAGTCACACTTACATACATGGATACACATGAGGATTACTAATAACAATGGTGTGTTTGCTCTCCAAGGAATGGGAAACAGAATGCAGAATAATGTAGTATATTTATTTTGAACATGTACAAAAATATTATGAATAAATAATAATACTAAGTTCTAAAAGTTGCATGAAGGAGAAAACACTAAACATGACCCTCCTGCtacgttcacaccaaaaggcccaaaacgcttgagtttactcgcgcgaccatttgccgtgttcacgccaaaagcgttgcgaagctccgcgaggggcggggcttgtatctgttacttgtctccgtggaaacagttatcatctccttcatccaccatgaagaactaaccacgagttctgcttcatacttgttgaggatgtcccacacacgtgtgaacatctaatgccctcgtttgggttcagaacattaatatatatatatatatatatatatatatatatatatatattatacatgacatcacccgtaggctcacacagctcggtgtctttcaccgattaagttatctgttacgtctgaaaggcttccgcttgagcgctatgagagcggaacatccaaacgctgttattgtgtttatatatttatatatatatatatatatatatatatatataatctcccaaaacgcccaaatcgcaacgcccggaaaaatGTATCATCTGTCGCAGCATTCAGTGTTGATTTAAAATGTGAAGTTGTGTTTTAGTTTTATTGCTGTGTGAACGTAGGCTAATATATGGCTACTTAAAACATATAAGAATAATACAACAACCTTTCCTCGTCTCTAAACATCTTAGATAATAATAAATGAAGATAATAACAACATCATTCATCATGAAAGTGATAGATAACACATTTGCTATCTTTCATCATATATCTTAATAATAAGTATAAACAATATCACTCAGACTTCAACCGACTTCAGCATGAAGTGATCATAATATGACGATGACGCTTGGTGACAGAGCTGCACTGCTGGACTGTAATACAAGTCTATAAAGTATTTAATGTCTGGTCACATGTTTAGACTTCAGTAACTGAATAGTGTAAATAAGATGCATGTGTCACATTTGGCTTCCCTGTCATTCAGCAGTTTGGACCGGCAGCAGCACGGCCTCCTACACTCCCTTAGGTCCCCAGAACGGGCGTGGTCATCATCCAAACCACCACTGTGAGTGGTGCTTTAACCCCACCGACTCCTTCCTATTGAACAGCTTATGAGATATTTTGGATCTTATCATAAGTAACCTCTAGCATGTGTACCGCTCAATGGCTGCAGGAATAGATTCTGTATTTGTGTATCTGTCCTGGAGAATTTCTATAGACTGTATTACATGTTGTGGAATTACAGTCGCATTCATCTTGCCTTAATTCTTATATTCTGTTATATTGTTATTGCGTTACAGTAATACTGGCCACACGTTTGATTAGTACCACGAGGAGTTACAGCCACACTGTCACGTGATTGGTTCATCTGTGTGTTGTTTCTGCTACAGACTGAGGTTCTCCTGTCTCTGCTTTCAGGGTCCCAGCATCATGGCTCCGCCTCTTTCCCTACTTCTGTGTCCAACCATCCAGGTTAGAGATGATGTCACTATGGATCAAAATATTAACTTAATATGACATAGTCCTGGTAttgctccggtccagacctagaaatgctgctataggcggagaggctgctgggggacgcttaggatacactgagcacctctctcctctaagatacactgagctcctctctcctctaggatacactgagcacctctctcctctaagatacactgagctcctctctcctctaggatacactgagctcctctctcctcttctctctccttatggatgaattttcatctctccatcacacattattaactctgcttcacatgacatctattgttcatctggtcacatgacatctattgttcatctgatcacatgacatctagtgttcatctggtcacatgacatctattgtccttctggtcacataacaacctttgtttctgtccatcctggagagggatcctcctctgttgctctcctgaaggtttcttcaccttttttttaccctgaaaggagtttttcctgatccgatgtTCTTTTttcagttttatttgtatagcccaatatcacaaatcacaaactcccctcagagggctttacactccgtacagatacgacatctctgacctttgacctcacatacgatcTGCAGTCTAATGTGTAcgatgtgaggtcaaaggtcagggatgtcgtatgtgtacagattgtaaagccctctaaggcaaatttgtaatttgtgagaatgggctttataaaataaatgtaattgatctgaattcctaCCGGGTCTTTAGGCATTGAATTCTTTCCTGTTGTTGTTGTTATGATAAACGTCGCGCTGCACAGGGCTCATATCTTGTTTATCCAATCTGTCGTCCTTATTTACGTTGTAATATTGTACGTTGACAGTTGGTATAGAAAATAATATTAGATTTCTGTAGGAATGGGGATGGTAGAGCTTCTGGTGAATGTGTATTTATGGCTGATGCCGGAGACGTTCCACCCAGATGCCTCAGGGTCAGCAGTGACCTGTGACCtgttaagatgtaatagtttattttgataacatctgcagaggtcttatgttttaaattaatacatatagaaagatattataatagaaaatattagggagaatattgatattgttattaatgtattgtgaagcataggggtaatgtttactctatgcaaatgtaaatggcaagaattaatgtatattgcatgagagtgactgtatgttagtattatagattgacgaggccgattgaattccgtcaagtgacttccaataacaagagacttttattgtgaaagtgactttaatgcggacaataacaagacgggactcttattgtgaaagcgactggaccggaagtgacgtttcgaccgtgagatgaaactccgtgttttagagagatcgccctcttccacaagtaagctccgaggccgcaaggctgagctcccggaggagccgggagccgggacacgaggaagagcgctttgaatgtttgttctacacttcctgccattaaatgttgataacttaattcacgcgcgtccggaagcctgttttccatcatctgcgaagtgcccagtttcagaatactctacaGACCCCAGCTCTGTTCTCGTTGCAGGACCCGAGTTCTGGTGCTCCATCTCCTACTTTGAAATGGACGTCCAGGTGGGCGAGATGTTCAAGGTGCCCTCCAGCTGCCCGATCGTAACCGTGGACGGCTACGTCGACCCGTCGGGAGGCGACCGCTTCTGCCTCGGACAGCTGAGTAACGTCCACCGCACAGACGCAAGTGAGAGAGCGAGGTGTGTGTCCGTCCAGATCCTCCTGGAAGCCAAACGCCTCAGAGCGCTGTCCTCCATGTTTCATGCATCCACGAGCCGCTCGCCGTCACCGTGCCATGTGTGAGGCGGTGACCTCACAGCCACCGCCATGACACCCTGTCAGGGAGGGGAGTggagcaggcgtgctcacctggggggacgtaaaggcactgcagggggaaataccaatagttgtattccaaattagcatcggtgccaaatatatatatttttaaatattcatttaataaatattcaatgaaatataagtgtaagttACTCAGGTTTACTTTGGCACAtgttggttctttgactcattgacttgttggatctttgtctatttgactcgttggctatttgactcgttggatctttgactatttgactcgttagccctttgactcgttgattctttgactcgttggctctttggctcgttggctcattgactctttggctctttgactcgttggctcattgactcgttggctctttgactcgttggctcattgactctggctcgttggctccttcactatttggcttgtttatactttgactctggctctttggcttgttaatgtgttgactctttgactcttcgactcgttggctcattgactctttgactcattgacttgttagctctttggctcattgactctttgacttgttgactctttgactcgttgacgttttggctctttgactcgttgactctttgacccgttagctctttgactcgttagctctttggctctttaacatgttggatctttgactatttggctcattgactctttgactcgttgactcattgactctttgactcgttagctctttgactctttggctctttaacatgttggatctttgactatttggctcattgaccctttgacttgttggctcgttggctctttgactcgctgactctttgactcgttagctctttggctggttggctcgttgactttttgactcgttagctctttggctggttggctcgttgactttttgactcgttagctctttggctcattgactctttgacccgttgactgtttgactttttggctctttgactcgttagctctttggctcgttggctctttgactcgttgattctttgactcgttagctctttggctcgttggctctttgactcgttagctctttggctcgttggctcattgactctttgcctatttgactcgttggctctttgactcgttgactcactgactctttgacttgttagcactttggctctttgactcattgactcgctgactctttgactcgttagcgctttggctagttggctcattgattcgttgactctttggctcgttgactctttgactctttgactcgttagctgtttggctctttgactctttgactcgttggctcattgactctttggctctttgactctttggcttgttggctctttcgctatttggcttgtttactcttcgactctggctctttggctcgttaaattgttgactctttgactcttagactctttgactcgttggctctttgactcgttggctctttgactcgttggctctttgactagttggctcgtttactctttgactctggctctttggctcgttaaatcgttgactctttgactctttggctcgttagctatttgactcgttggctcgttgactcgttagctcgttgactctttgactctttCTATCACTTGTCGTCGTCCGTTGGGAAAGATAAATGGTCTAATCGGATGCTTTGTGAGATCCAGCGCCGTGTGGCGTTCTGCTCCTCGCCCACACAGCTGTTCACAAACTATTCTTCCAGCTGCCACTGGATTCAGATTCTCCAAAGGagtcaatgtgtccttgggcaagacacttcaccctgaaatgctccctgtagctgtgtctacggtgtgtgtgtgtcacatgattggataagtAGTGTAATGTAACATGAAATCACAGCATTTGTGTTTTTGGTTTTGTTGTCGTGTAAATGTTAGTTAATATACGGCTATTCAAAACTCATGAGTGGTGGTTTTGTGTGGCTGTAAATCTGTAACATTCAAGGCCGTATCGGCTGCATCCCGCTCCTCACTGTGTTGTGTGTCGACGCCACGAGACTCAGAGCGGCGCCGTCTCTGGGCCAAGGCCTTCGTGTAGTGCGGTGGTTGTTCCCGGGAACGCAGGAGTGTGTGAGCTGCTCTGAAGGCTCACTGTTCTTCACCACAAATGTAGAAGTCATTCAATCTAGCATAATGAGCAACAACAGATGACCACTCTCCTCTTCATCACCCACCTGAGCAGCACATCTGGAGAGCCTTGTGCTCATCTGGGCCAAAGACCTCTGATGTGGAGTTAGATTAATGAAGATTAATTTATCTTCACAAAGACAAAATGCTTCTGTAGCTGATTACAGCGCCACTATAAAACAGtttgattccagtggtggtctctctctctctctcactctctctctctctctttcactctctcactctctctctctttctcacgctctctctcactctctctctttcactctctttcactctctctctttcactctctctctcactctcactctctctcactctctttctcactctctctctctctttcactctctctcactctctctctttcactctctctctcactctctctctcactctctctcactctctctcactctctcactctctcactctctctctttcactctctcactctttcactctctctcactctctctctttcactctctcactctctctcactctctctctttcactctctctctctctctgcccccctccctcccccaATTTGTCATCTGTCAGGAAAAGACACAACTGACCAGTACAATACTATTCTTTTGTTTATTTCCACAATAACTAAAGTGCGGTTCCACGTCTGTCTCTcCCCCCCCCCCTtgtgtgtgtgtgtgtgtgtgtgtgCTGCAGGTTGCACATCGGTAAAGGCGTGCAGCTGGAGTGTCGCGGCGAGGGCGACGTGTGGATGCGCTGCATGAGCGACCACGCCGTGTTCGTGCAGAGCTATTACCTGGACAGGGAGGCGGGCCGAGCGCCGGGCGACGCCGTGCACAAGATCTACCCCGGCGCCTACATCAAGGTCAGATCCTCTGTGTTTACACTGTCCACCTGCTGCCGTTGGTTCGAGAACACCGGCGAGTCGTGAGCAAGGTGTGAGCCGATGAATGCCGTGTGTTGGCCAGGTGTTTGACCTGCGGCAGTGCCACAGGCAGAtgcagcagcaggccgccacggctcaggctgcagcggctgtgcaggcggcCGCCGTGGCTGGAAACATCCCCGGGCCGGGCAGCGTGGGAGGCATCGCACCGGCAGTCAGTAAGTCCTTCACACGCCGCATTTGACCTTGAACGATGAAATGGAAAATGTCCACGGGTCGAGGTGCTGATGCtgcgttcacaacaacagcgtggagagtgttccccgcgacgagatcccataaacaaagtccaggtccagacgcgagcggtttgccattgacgcaaatttttcgccgggcggcgcgaatcacgcatattgagcgaagcgagaaattcacgtgattcgcctcaagtttcaatatttcaactttgGCTCAAGATTGGCCAAAGAgttgtgagagccaatcagagttgagctgctcctccgttggtgaatctaactgctgctctagtggagctgaagagacattcagactagaggtgaaggtcaccgggctgtgtgagcctacgggggatgtcatgtataaatatatatatatatatattacatatttatatCtgatattaatgttatgaacccaaacacgagggcgttacatgttcagacgtttgtgggacgtcctcaacaagtctgaagcagaactagtggttagttcttcatggcggatgaaggagatgataactgtttccacggagtaaagaaagagatataagcccgccccctctaagccccgccccctctaaggcacgaatgacatgaaaagccacgaacggtcaagcgagtaaactcacAAAGGTTCCGGTGCGTCACACAGCGTGAGGCCCAGCATGACTCGTGTGTGAGCAATGAACAGCGAGCACCAATCGGTTCTCCCCGTTCCCTGCAGGTCTGTCGGCAGCGGCGGGCATCGGCGTGGACGACCTGCGGCGCCTGTGCATCCTGCGGCTCAGCTTCGTGAAGGGCTGGGGGCCCGACTACCCaCGGCAGAGCATCAAGCACACGCCCTGCTGGGTGGAGGTCCACCTGCACCGCGCTCTGCAGCTCCTGGACGAGGTGCTGCACACCATGCCGCTGGCCGACCCCGGGCCGGCCAACATGGACCTCCCGCCTGGCATGCCTCTGGCCGACCACCAGGCGGCCATGAAGCTCCCTCCTCCAGACCACTATGGCCAGCTGTCCTCTGAACCCCACGGACCCCCACCGGTCACCCGATACACCAACCTGCCCGTCTCACCCAAAGTGTCGGGCTCCGGCTCCATGCTCCCGCTGCAGGGCGGCCACGGTGACGGCCGCCTCCAGACggcgtctccacaggcgtctccacaggcTCAGGTCATgacctcggcgccgcgacctccgaccccgacccagcccccTCCTCAGCAGCAGGCTGCCCAGCAAGCCTCGCAGCCCCCCCACCCACAGCAACCCCTCCTGCCTCCCCCCCACCCGGACGGCCAGAACGGCTACAGCAGCAGTAAACACGCTCAGAGCCAGGCGGCCTTCCACACAGTTTGGACCGGCAGCAGCACGGCCTCCTACACTCCCTTAGGTCCCCAGAACGGGCGTGGTCATCATCCAAACCACCACTGGTCCCAGCATCATGGCTCCGCCTCTTTCCCTACTTCTGTGTCCAACCATCCAGGACCCGAGTTCTGGTGCTCCATCTCCTACTTTGAAATGGACGTCCAGGTGGGCGAGATGTTCAAGGTGCCCTCCAGCTGCCCGATCGTAACCGTGGACGGCTACGTCGACCCGTCGGGAGGCGACCGCTTCTGCCTCGGACAGCTGAGTAACGTCCACCGCACAGACGCAAGTGAGAGAGCGAGGTTGCACATCGGTAAAGGCGTGCAGCTGGAGTGTCGCGGCGAGGGCGACGTGTGGATGCGCTGCATGAGCGACCACGCCGTGTTCGTGCAGAGCTATTACCTGGACAGGGAGGCGGGCCGAGCGCCGGGCGACGCCGTGCACAAGATCTACCCCGGCGCCTACATCAAGGTGTTTGACCTGCGGCAGTGCCACAGGCAGAtgcagcagcaggccgccacggctcaggctgcagcggctgtgcaggcggcCGCCGTGGCTGGAAACATCCCCGGGCCGGGCAGCGTGGGAGGCATCGCACCGGCAGTCAGTCTGTCGGCAGCGGCGGGCATCGGCGTGGACGACCTGCGGCGCCTGTGCATCCTGCGGCTCAGCTTCGTGAAGGGCTGGGGGCCCGACTACCCaCGGCAGAGCATCAAGCACACGCCCTGCTGGGTGGAGGTCCACCTGCACCGCGCTCTGCAGCTCCTGGACGAGGTGCTGCACACCATGCCGCTGGCCGACCCCGGGCCGGCCAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03166	MH2	MH2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001132	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013790	Family	Dwarfin	Interproscan
IPR017855	Homologous_superfamily	SMAD-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13703	SMAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030509	Biological Process	BMP signaling pathway	Interproscan
GO:0060395	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411	Molecular Function	I-SMAD binding	Interproscan
GO:0071144	Cellular Component	heteromeric SMAD protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-