Gene detail

Detailed information of HS00042 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00042	SNARE-ASSOCIATED PROTEIN SNAPIN	chr1	968403	970755	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00042

ATGGCGACAGCGGCTGTAGCGGCGACTTCCTCCGGTAAAGATGCGGTGGCCGAGGGGCTGCTGGACCTCATGACACCGGCTATCCAGCAGCTCGACCTGCATGTGCACTCAGTCAGGTACACGCGGCTCCCCTGAGGGTTTCTGCCGCGGCCCGGGTCTCTGTGCCCCGCAGCAGCCCTGCAGTCTCGTGACTGTCCGCAATGTGTCCATCCGGGTTATTATCTTCTCTTTCACTCTTGAGTTGTTATCGTTgCTATACGTATATTAGTTATCTCTCCCGCAGGATGTATAAGCCTTTATTGTTTGAGCTGTAACATGTCACAGTTTACAATATGTATGTTGTGTGTGGTCATTTGTGTCCTTACTGTGGATTAATGGGATGTTTGTTCTTCTTCACAGAGAAAGCCAGGTAGAATTAAGAGAACATATAGACAATCTGGCCACAGGTAATTTATTGCATGTACTAGTCTGCTAAATTGTTATTTGTTTGTATTAAATTGGGGatacacactaccggtcaaaacttcttgaacacctttctccagtttttattcaaatgtacacggttttatttctcaatgtactctgaaattaaagcatagaaaaaacaatgggagataCACAAAtaaatcatggaatcgttttgtttaacacaacgtaatctacacgtttgactccttgtaatctacatatttgactccttgtaatctacatatttgactcctcttgtaatctacatgtctaactcctcttgtaatctacacgtttgactcctcttgcagatataacagccaaacacactcgtgtagcattctttctacaatggatatcaaatattgtttgtgaagttgttccCAACACTGGAGCAGAAGGTCCCACATATGTGTTGCACTTGTAGGTTGAAATAATGGGTGTGTTTTAAAACTTTTGACCGGTAGTGTATATATCAAACACAGCATTTAAAGATAAACGTATGAAGTACATTAAATCACTTTGTTTGTTAACCATTGCATTGGTCATGCGTGTCTCTGAATGTACAGAGTTGTGCCGGATTAATGAACACCAGAAGGTGGCTCTGGACCTGGACCCGTACGTGAAGAAGCTGCTGAATGCCAGGCGCAGAGTAGTGCTCGTGAACAACATCCTGCAGAACGCCCAGGTCAGTGGCGTGGCACCTTTTAAAGCTGCTCCAATTCATATTTAATGCCGAATGTGTCACCAACTCGGCTCTACAGGGCTTTTTAGCAACTTCAACTTCTTTAGATTTTCTGGCCTTTAAACTCTTTTCAGAGAAAAGGCTCTAAACCCCACCGTGCCCTACCTGCTCAGCAGAAAACAGCCGACACTCTTAGAGACTACGGTAAACATGGTCAGCAGCTAAAGAGACGGCACCTCTCTGCAGCTGGTAGAGACCAAGTGAATATTAGACCTCCATTCCACATGTTGGCCTGTTCCTCTGTTAATACAGCTAAGATCAACACCACGACTGCAACCATTACCTTTCCCACTGTTAGTGACTCAGTAGCCACAGGTATGTGTTTGTcagtgatggaaacatgacagctgggttggagatgctcatttttgctcatttttccggcCCAACTTGTGACTCTTTGTCATCTCAGCCCCAACTTGTCTGTCTCCATCCAAGCAGCGCTTGAACATGGCTCCAGATGAGTCGGTTTAATACCACTGTCCTGCTGCAACTATttaaattcagtttattttttacagcccaaaatcacaaattatgaatttgcctcagagggcttcacaatctgtacacatagacatccctgacctttgacctcacattgggtcaggaacaactcccaagaagtcaaaaaaacctttcagggtaaaaaaaagggggggggatccttcaggagagcaacagaggaggagccctctccaggatggacagaacaatagatgtcatgtgaccagatgaacagagttacatacacattcaatgaatatgacagagtgtatgaatagttggtagtaggcatggaccacgatccagacctccatgatccatgaaatagaaggaggcagggggggggggggggcatcagcagggccatggcaggaggcctgagacacagccaggtccaatggaccctatTACTCCTCCTAATAACTACTACTATTACCCCATAATGTTTAACATTTAAAAACAGGAACGACCAGAGACACTGTCAAACCATATCTGACACCATCACCTTCATCATTCTTCCCCCAGGAGCGTCTGAGACGACTCAACCACAACGTGGCCAAGGAGACGGCTCGACGGAAGACCATGCTGGAGGCTTCCGGAGCGTTCGCCTCGCGCTCCCCCAGCAAACCCATGGCGACAGCGGCTGTAGCGGCGACTTCCTCCGGTAAAGATGCGGTGGCCGAGGGGCTGCTGGACCTCATGACACCGGCTATCCAGCAGCTCGACCTGCATGTGCACTCAGTCAGAGAAAGCCAGGTAGAATTAAGAGAACATATAGACAATCTGGCCACAGAGTTGTGCCGGATTAATGAACACCAGAAGGTGGCTCTGGACCTGGACCCGTACGTGAAGAAGCTGCTGAATGCCAGGCGCAGAGTAGTGCTCGTGAACAACATCCTGCAGAACGCCCAGGAGCGTCTGAGACGACTCAACCACAACGTGGCCAAGGAGACGGCTCGACGGAAGACCATGCTGGAGGCTTCCGGAGCGTTCGCCTCGCGCTCCCCCAGCAAACCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14712	Snapin_Pallidin	Snapin/Pallidin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017246	Family	Snapin	Interproscan
IPR028119	Family	Snapin/Pallidin/Snn1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31305	SNARE-ASSOCIATED PROTEIN SNAPIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0007040	Biological Process	lysosome organization	Interproscan
GO:0008021	Cellular Component	synaptic vesicle	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0016079	Biological Process	synaptic vesicle exocytosis	Interproscan
GO:0031083	Cellular Component	BLOC-1 complex	Interproscan
GO:0032418	Biological Process	lysosome localization	Interproscan
GO:0099078	Cellular Component	BORC complex	Interproscan
GO:2000300	Biological Process	regulation of synaptic vesicle exocytosis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-