Gene detail

Detailed information of HS00021 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00021	MITOCHONDRIAL RIBOSOMAL PROTEIN S18B	chr1	516472	520103	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00021

ATGGCTGCCTCCTTTCAAGGGATCGCGAAGCTTCTGGGTCGTCTCTCGCCTTCCTTTTCACATCCATTGCGACAGTATCGGGTATTTATTTTCACTTTTACGTTTGCCGATAATCCGATAAATGTATCTGTGATGAGTTCGTAATGAAGTTTTTAAATATTGAGGTGATATGACGGTCTCCTTCGCTGTGCACAACGTGACAATCTACCGGAGACGTGTAGCATTTTGCGTTGACTTAATTTAGAATaTATCGGCAATAATaCAGACACAATACTGTATTGTATGATAGCCATAACTACACACATGAGCCAGCTCCAACTgcgaacctgattccgcctaactataagcgctgttaaagaggaaagtcttcagtctactcttaaatgaggtgactgtgtctgcctcccggactgaaggtagaagctggttccataaaagtaatactatagtactatgagcgctctagttggctaatacggtactatacaactccatagtggggtaatggttatatgagctctctagtggggtaatatggtactataagctttctagtggggtaatatggtattataagctctctagtggtgtaatatagtactatgagctccttatggtataatggtgcctcaccgattaaggctttgtgtgagaggagaagactttaaagtgtgattcttatttttacaggtatccagtgcatagaagctaaAAACATATATTTACTCATGTTGTGTTGATGATAATGGTGAGAGTTTTCCTTTGCATACAGTTGTGTCTGCAGAGGCTGCGTGTAGGACCCGGGCCGTGTCTCTCTCCATTTGTACCTCCAAGTCATTCGTTCTGCAAAGCTTTATcGCTCCAGGATGAGAATGCTAATCAGGCTGCTGAGGCTCTCCTCCGCTACAAGGAAAGCCCCTGGGATTATCTGGAAAGTGAAGGTACCTAAAAAAAAACTCAAATCTCAGCTCCCATTCTTGTAGGCCTACTTTGTTTTTTAATATATTCCTTTCCTCTGACAGAGTACATTGAGAAGTATGGGACCAAGCCAGTGTGGGAAGGCTACAGGAGGAACCACAAAGGCGGCATTCCTCCACAGAAGACACGCAAGACTTGCATTGTAACATTTCTATTTGAATACATCCTCTAATCGTTCTATGTAAAGTGAAGTCACCTAAACACTGATTCCTTTTCTATAGAGAGGAGACAAGATATGTGCAAATCCCTGTCCAGTTTGTCGGGATCCAAACATTATAATCCATTATCAGGTGGGTCAACATCTCGGTCACACTGGTGGTCTCACCACGCATCAAACACATTGTGCTGTTGTTCTTTAATATTAATATCAATATTTTACTGTTGAAGTCTGAGTCTGCAGCCTTTTATTCCAATCTGCACAATTGATTTTTTTTCAAAGAAATAAATACTTGTTTGATTTTCTCCATATCATTTGAATAATGAACCTCTGGCTGCATACAGTGGCCAGGAGGAGCACTGTGTGTTGTTAGCCAGCACATTGCCCAGCACATAGATAAAGCCTCAGTACAATTGAAACAGGAGTTGTCCATTCTTGTGGCTGTGGCTTCATTGTTTTTCTGAGCTGACCAGGCACATTTCCATTCAATAATAATAAAGTGAGAAAGAAACTAAAGCTTTGTGCATGTTGGTATGAAAAAACAGGTAACTGAAGCTTTAGAGACATTTAGTTAGTGACtgagtcagtggttagcagggccgtctttcaatcgtgtggggtgttggtggttcaatccccgccctcgtcggcatgtccttgagcaagacacttaaccctgtgttgctccctgtagctgtgtctacggtgtatgaatgcaacatgattgtcgctttggataaaagtgtcggctaaatgaaaagtgatgtagcCTTTTGTGCATTATGTGGCATCAGCCACCAAAGCGTTGCAGAATATTCAGGACAGAAATGTCTGGATTAAAGTAAAGAAGATCTCAAATTCTACATCAGCCATATTACGTGTTTTCATGAACGCACTTAATTTTAATAAAAATCCTACAATGTGGACATTAAAGAATTGTGACCAATATATTTAGTGAGCGGGACATTTTACAGCATATAGGTATATGACAATGGAGGCTTTGTTTCTAAATGACCTTGTTTGCTATTTCCTCAAATTACAGAGAAATACGTATTCCACAAGCTCATTAGGACCTCAACTAACGGCTATTATTATTGATCAAATGTATTTATTTTCCACTTTAAAAACGTCATTAAACTGCTTCACAAAGACAGTAAATAAAACAAGCGTTAGACTTTAACAGTGGGCAAACTGTTGTGTGGACGAGCCGCTCCAGATAAAGCCAATCGACCCAATACTTTCCTATTGTTAGGTAAGTGATGTCCTCAGTCCACAAACAAAATGTTTCAGTTTATGTTCATAGAGACAAATTAGAAACTAATTTAAATTATATTATTCAATCATTAAACTGATTGCCAATTATATTTCTATTAACCAAGTGATCAATAAATCCTGTAACTGTGATACTGTCTGCTCAGCCAGGCTCGGTCCTGTTGGCTTTGGGTCAGTATCATTtcaagtacataagtactgacttgtgctctatttccatttgatgcttactccttctatcccagcaccttttatagggactctgtcatttttacactacattagtttgacaactgatttatattttcctttAAATTCCTCTACTAAACTCCTAAAATGCAATTAGTTCAATTGAAACTAGCATTCACACCCATTTTGCTTTGTGACCTGTTAGCCAGTTTAACAATTGTGTGCATTGTCTGTTTTGAAATGACATGCTCAACAGCAAATGGCTATATCTAAACCACACAGCTGACTAAAATAACTTCATAAAAACAACATGCTTCTTATAGCGTCTTCTCAAAAGTTGTATTGATGTAGTATTGACTAATGCATGAGCTTTGTTTAATTCAATATCATAAAAAGTTAACCTAAATCTCTCCTCTCTTGCAGAATGTGAAATTGTTGCAGCAGTTCATTAGCCCCCAGACTGGAATGGTGTACGACCCCACTCGAACGGGTAGGTCTCCAACATGAGCCCGTAGTGCTGCGTCAGGGTGTCCAGGTGATCATGTAGCGCTGCTTGTCTCCAGGTGTGTGTATGAAGCGGCAGAAGAAGCTGCACGAGGCAATCGACGCAGCAAAAGATCACGGTATGTAAGCAACATGAGATCTGTATGGACAGTTGGATGTTTGGGGGTGGGGCTGTGGCTGTACGAGGAAGTGGTCTGGGTTTACGTGTAATAGTTTCACCACTTTGCTGCATCAGTTGTGACAGAGGTTTTGATCAACTGCTCCTCTGGACCGCTAATATCCACACAACCAGTACATCATTATTCTCACATCTGTTCGATGTGTCTGTCTTCCGCCAGGCTTTCTTCCCTTTCAGATTCCATATGTGGAATTTTCAGGAGAGGACTACTCAAATTCCCATGACGCTGTGGGGTCCACTTCCCCTCCCCAGTCGTTGGCCTCTGGTGAAACCTGGTATAAGTGGTACAGTGAGATAACGCCTGATGAGAAGGAAGTGGCTAAAGTGAGGAGGACATATAAGGCATACTTAAAGATGGCTGCCTCCTTTCAAGGGATCGCGAAGCTTCTGGGTCGTCTCTCGCCTTCCTTTTCACATCCATTGCGACAGTATCGGTTGTGTCTGCAGAGGCTGCGTGTAGGACCCGGGCCGTGTCTCTCTCCATTTGTACCTCCAAGTCATTCGTTCTGCAAAGCTTTATcGCTCCAGGATGAGAATGCTAATCAGGCTGCTGAGGCTCTCCTCCGCTACAAGGAAAGCCCCTGGGATTATCTGGAAAGTGAAGAGTACATTGAGAAGTATGGGACCAAGCCAGTGTGGGAAGGCTACAGGAGGAACCACAAAGGCGGCATTCCTCCACAGAAGACACGCAAGACTTGCATTAGAGGAGACAAGATATGTGCAAATCCCTGTCCAGTTTGTCGGGATCCAAACATTATAATCCATTATCAGAATGTGAAATTGTTGCAGCAGTTCATTAGCCCCCAGACTGGAATGGTGTACGACCCCACTCGAACGGGTGTGTGTATGAAGCGGCAGAAGAAGCTGCACGAGGCAATCGACGCAGCAAAAGATCACGGCTTTCTTCCCTTTCAGATTCCATATGTGGAATTTTCAGGAGAGGACTACTCAAATTCCCATGACGCTGTGGGGTCCACTTCCCCTCCCCAGTCGTTGGCCTCTGGTGAAACCTGGTATAAGTGGTACAGTGAGATAACGCCTGATGAGAAGGAAGTGGCTAAAGTGAGGAGGACATATAAGGCATACTTAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01084	Ribosomal_S18	Ribosomal protein S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001648	Family	Small ribosomal subunit protein bS18	Interproscan
IPR036870	Homologous_superfamily	Small ribosomal subunit protein bS18 superfamily	Interproscan
IPR040054	Family	Small ribosomal subunit protein mS40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13329	MITOCHONDRIAL RIBOSOMAL PROTEIN S18B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-