Gene detail

Detailed information of HS00001 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS00001	PDF RECEPTOR-LIKE PROTEIN-RELATED	chr1	33124	36598	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS00001

CCCAGCTGGCCCCTGAGGCCCCCGAGGCCAGCAGGACCCGCGCTGCTGCTGCTCCTCTTTGCTGCCTTCAACCTTCAGGTAAAGGTCCTGCTGAACGCGCACAAAGAGGCCTCCACTCATTAGCATTTCAGTCTTACTTAGCGTTGACCTTTGCAGTAAAACACACCATTTATTTTGTATTGGACAACATTTAAACACTTGGGCTTCGTGGACAttacagtttttttcaggcgctaccaagcgttgtccaaccagtggtcacattttcaaaactctaaacacaatgagcacagcaggtgttttgtcgccgtaccgttcacacgtttcacgtcgtgttcacacaatatgcagtcagtgaacacatttacacaatgcttacattctcttaaaagacgagctatacctcccaataaaatgatggattgttcttgtattacttatgaatgttaacacacaagatcccacaatggcaaaaccaatattccaaaccttagatacagtctcaaaacctgttctgcaatgatatcagttttaaaacaagatatctcatctgataataaacaaacaattgattcccatctcctcctgatggtaggtcagagtttggaatgtttttgagaaatatgttttagcaagttttggattagaatttacattttgattatgaccggttgagatgttgatcacacagacaccgcctacattgactaaccggatgttgttcaatcatctgttgcagccgttgccccaaaacatagtttatttgtaataaaaaataaaaaaatagtttggatttgctgtaacttttttaaaggaacaattgttcccccctttttatctgggcttgttgccgttgtgtttcttggatattatgttcactgtaagcaatactgtaaaaccttttctgttccatcagactgtaaacagtatttatactgtacctcctgtagtaaacagcaaaggaaaaaaactgattagtttttgactggaatgcttttgaatgtgaacattacatgtggacatacagttcccaaccaagacatgtagtgtaaaaacagtggattacatgttttgcatgcaaatacctgaacaactgaaacataaaagtctgtgcagtttttgtaatgtcagcaatagccagtgttttgaaacctggtggactttgattgactggaaggagctcgtgaagtgaaaacaagagttattctttgacagaataatttcattttgagtcagatttccagtgttttggtaaagttagtgtctgcagaaaaagatatgtaatattttgaaatgaagagttagtatatatttaacaaaatgtgcttttgagaagaaaatgatccatttggccaattgtgctttgtaggtgtgagtctgtgttaagagtttagaaaaagtatctgaagtatgggtgagcgcttattagcgattgaaaaaaactgtaaCTTTAATCCGTAACATTAGAGTTGTGTGAATCAGTGTGTGAGAGGCGGGATGTGACTACAGATCTGGCTCTTGAGTTCCCTCCGTCGGCCACTCTGTACAGAGCTGACACCATGAGCTCAAGTCTTCTCTGCAGCTGTGACACGGCGGTGGACGAGCGGCTGAACGACCACGACTCACTggggggggggggggggggggTTAGAGATTAGTCAAGCTACGGCCGGTTCTGAGGATGAATTATGAATGAGAGAGATGGTGAAGGTGGTCTGAAACTTTTCGTTGAAATCAGGAACATTGTAATACATTTGACTAATGACAGTGAATAATAATCATAGTTCCAGCATTAATTAATTTGTAAACTGTCAAGTAGAGCTACCACTTGTTTATTGACGTCtgtcaccgtgtgaaaccagaagtcaacgttgacGTGTGACTCCCATTCGCcgattcgctcgaatgtaacctccaatcatggcagaggatgcaacggcccccccccccccccccccggatgctcgaccaatcaattcgggtcattatcctgtccagttttcttatatcccgtatggcgtggattatagtgagccacctggaaaataatGTAATAATCAATAATATTGGGGAGCTACACAATCAGAAAAGAAACATCCATTGcagctgagcctaaccacgcctccagctgagcctaaccacgcccccagtgtagcataatcacgcccccagctgagtctaaccacgcctcgcctccagctgagcctaaccacgcccccagctgagcctaaccacacacccagctgagcctaaccacacccccagctgagcctaaccatgcccccagctgagcctaaccatgcccccagcggcgcataaccacgcccccagctgagcctaaccacgcccccagctgagcctaaccatgcccccagctgagcctaactacgcccccaactgagcctaaccatgcccccagctgagcctaactacacccccagctgagcctaaccatgcccccagctgagcctaaccacgcctccagctgagcataatcacgcccccagctgagcctaaccacacccccaCCACCACCAGATATTCATCTTTGAGGGGAAATGGAAAATGTGATTTATATTAAAGTAAATGGTAATATTATATGTGCACTTTAATTCCAACATTCTTTAACACTTTACGGGTCAGATTATTAAAATAATGAAGTGTATCTCACTTGTTTCATTTGTTTGCAGGTAACCGGCTCAGTGCTTGAAAGTCTGATCGCCAAACGGACTGAGTACTGGGAGCACTGCAACAGAACGCTGGAGACCAGGGCGCTGCCAGAAACCGGTGAGCAGTCGGTCAAGAGGTCCATGTTCATTCTCTGGACGTTTTTGCCTTTGTGAAAACTTGTTTATTCTTTTTTCACAGGACCTCACTGTAAAGGCACCTTTGACCTGTTTGTCTGTTGGCCATATTCGTCTCCTGGGAATGTGTCTGTGCCCTGTCCTTCTTACTTACCATGGATCAGTGAGCACAATGTTATGTTTTCATCTCATGAAGTTCAAATCATAATGTATGTTATTCAGGCGTCGGTGTTTGAACATGctttggtccagaatgtaacatctcagccacaagtggattgatttccatgggatGTGTGCTGATGGCCTGTGGATCAGAGCAACCGAGGAGGgacagatgacacatgtcatgtgtacacaatgaacaacacaacacactcacaacacacacaATGCATACCACAGGATGTTGGAAGAGTGATATTcACATACAGCTCAGTACAGCAGACACTTCCAAAAAGATTTTATACCACAATGAAGTTTTAATAATCATGTACGAGAAGTGACCATACCTATTCAGGATTTAGCTGTCTATTAATTCTCACAGAAGTAATCATTCATATCAATATGTCCTTCAATGACCTACAGACGGGTCCAGGAGGGCACATCGGGAATGCTTAGTGACTGGGAGATGGCGACAGAGGGAGAACTCCTCGGAGACCTGGAGGGACCCCAGCTGGCCCCTGAGGCCCCCGAGGCCAGCAGGACCCGCGCTGCTGCTGCTCCTCTTTGCTGCCTTCAACCTTCAGGTAACCGGCTCAGTGCTTGAAAGTCTGATCGCCAAACGGACTGAGTACTGGGAGCACTGCAACAGAACGCTGGAGACCAGGGCGCTGCCAGAAACCGGACCTCACTGTAAAGGCACCTTTGACCTGTTTGTCTGTTGGCCATATTCGTCTCCTGGGAATGTGTCTGTGCCCTGTCCTTCTTACTTACCATGGATCAACGGGTCCAGGAGGGCACATCGGGAATGCTTAGTGACTGGGAGATGGCGACAGAGGGAGAACTCCTCGGAGACCTGGAGGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02793	HRM	Hormone receptor domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001879	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR017983	Conserved_site	GPCR, family 2, secretin-like, conserved site	Interproscan
IPR036445	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR050332	Family	G-protein coupled receptor 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45620	PDF RECEPTOR-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0004967	Molecular Function	glucagon receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007188	Biological Process	adenylate cyclase-modulating G protein-coupled receptor signaling pathway	Interproscan
GO:0008528	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017046	Molecular Function	peptide hormone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-