Gene detail

Detailed information of HK74SY85_g9773 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g9773	PRE-MRNA SPLICING FACTOR PRP8	ctg65	1350980	1354474	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g9773

AGAACAGAGTACAGGATTGCATTTCCTTATTTGTTTAACAGTTTACCTTACAAAGTCCATTTGCCATGGTAAGTTGTCATTTGCAAGCTACTATGAAGAATCAGACACATGAGACAGGCATGcaactttgtctgtaacaactttgtctgcaacaCATTAAAAATAAATAAAACTTTTGATAAAAGAGCCTAATTGTCCACGAAAGACAGTGTGATAAAAAATTTAAACTTGAAGGGTAAATGAGTTTCAGGGCTAGTTTCTCTGGAAGTACATTTGAACAGCAGGACTTTTTTTTAATTTCATTTTAGGCAATAGTGATTTTCTTGATATTTGCCACTCACGGAATCAGCATTCTTCAGTCAATGAATGTTGGTTTGGGATAGTGGCTACAGTAAACAGGAGTTGGTACCACTGCTATATATATAGGTTGTTGCTTACAATCCAGCCAACAACTGCTCACCACTCCAAATATTTTGAAACAAATGCAGTTGAACCTGTATAACCAGCCTGCATTTAGGGAATTAACTAACAGTTGTCAAAGTTCTAAAAGTGGTTTTGAAACCTGTGAAAATCTCACGCCCATAGCGTGATGGCGTCAATTCTGTACTGTGTAGTTCCATGTtgcaagctgtattgtattctgggttagggttaatgtattgcagggtattgtttagctccaaattcattattcttggctattgttttattgccttcatgcctcaggtgcatgccttgcaacaccaagaaagagcCGTAATTCCACTCTTGTTTTATTGTCTTCATGCCTCACCAAGAAAGAGCCCGTTCTTACAAACCTTACTTTGTtgttgtttatgttattcaggtatcacagtgtcagtgttgtttatgttattcaggtatcacagtgtcagtgttgtGTACATCAAAACAGAAGATCCTGATTTACCAGCATTTTATTTTGACCCTCTCATCAACCCCATCTCTCACAGACATGCTGTCAAGGTATATATCTTGGATTAATTCTGACACTTTCAAATAACTCATTTCCCAGTAAATCAGTGGTTATAGAACATTAGTGATGCTTCAGGATTTTACACTGTAAGGGAATCACAACAATCAGGGACTTGactaagaggtcacatgaccctaccccccttaaatcaagcagcagtgtcaaaatgaactccagacatcaaaagagcagcacgatattagtacaaaggcaaagtttcagctcatagagtttgacacaggagaaatggcatgaaatatgaaatcaaatgtttactaagaatttgtatggaaaatgcattggttgccaagagcttgcttgcaatccagcacatttgcccaggcatatgaatcataataatattttcgattttattttttaatgccatCGTTTTGTAGTATTGCTGACCTTAGTTGTATTGTAATGTAGGCCCAAGAACCTTTACCAGATGATGATGATAGCTTTGAATTACCAGATGAAATCCAGCCGTTCTTACAGGACAGGCCGCTATATACAGACAATACCGCTAATGGTATTGCTTTATTATGGGCACCAAGACCTTTTAACTTGAGGTCTGGAAGATGTCGACGTGCTATGGATATACCTCTTGTTAAGTCATGGTGAGCTGCTGATTTGACACAGTTTTCTTAGTTAGATACAGTTTGGTTGTGGTTTTTGACACCACACACTTATTAAGGGTTTGTATACAATGTAGATACAATTTCGATAAAAAATAGATGGCTTAAAATTCAAAGTTACCAGTTTCTTAGCTGATTGCCGAATCTTAATGAAAAACCTACATCAGTTTGAGTTTCTGTGTTGGAGTGCGGGTACTAAGATTTGAGTCCTAACCTTATACATGGGCTTACCCTTCCAGAGTACACTTTATAATTTACAAGTACTGACTGCCGCTGCCATTAATCTTGCTCTTTATGATGTGTGTGTGTATCCATAGGTACAGAGAACACTGTCCGTCTGGACACCCGGTCAAGGTGCGGGTTTCCTATCAGAAACTTCTGAAGTGTTACGTATTGAATGCACTCAAACACAGACCACCTAAGGCACAGAAGAAGAGGTAAGGAAAATATATGTATTGTAGTTTtagagtagatgacgtatgactgtgaaaaacggcacagcatggttacagcacagcatggtcacggcacagcatggtcatggcacagcatggtcatggcacagcatggtcacggcacagcatggtcatggcacagcgtgggcacggcacagcgtgggcacagtgtggtcatggcacagcatggtcatggcacagcatggtcacagcatggtcatggcacagcgtgggcacggcacagcgtgggcacagtgtggtcatggcacagcatggtcatggcacagcgtgggcacagcatggtcacggcacagcatggtcacggcacagcatgatcatggaacagcttgggcacagcatggtcatggcacagcatggttacgacacagcgtggtcacgacacagcatggtcacggcatggaatttcagccatacggttttcacagtcatataatatctactctagatacataGTCTAGATGTACTTGTAACAGACACTTGAATACCTGAATCATAAATCCTTTATATGTGCTATATATATGTTTTGCCTGTGTTGTAAAGATATGTTTCTCCTCTTGAAGATACCTGTTCCGCTCCTTCAAATCTACAAAGTTTTTCCAGTCGACCACGTTGGACTGGGTAGAAACAGGTCTCCAAGTCTGCAGACAAGGTTACAATATGCTGAACCTCTTAATTCATCGTAAGAATCTTAACTATCTTCATCTCGACTACAACTTCAACTTGAAGCCTATCAAGACATTGACAACCAAGGAACGTAAGAAGTCTAGGTTCGGTAATGCTTTCCATCTTTGTCGTGAGATTCTAAGGCTCACCAAACTTATTGTGGATTCACATGTGCAGTACAGGCTTGGTAATGTGGACTGTTTCCAGGTATGATGGTGGAAATAATGCTTCTTTTCTATCTGTGTTGTCATAATCATTGTAGTATTTATCATCAACATTATTGTTATTGTCTTCTTCCTCATCATCAATATTGCTGTCATCTTTCTTGTCATTCATCAATTATTCATCAGTAGATCTCTCAGTGAGAGATTCAAATAGAAAACATTGATTATTTCATCATCATCATTACAATCAACCGTTTGTTGTTTTCCAGCTTTCTGATGGCTTACAATACATGTTTTCCCATGTTGGTCAGTTGACTGGCATGTATCGATACAAGTATAAGTTGATGAGACAGATTAGAATGTGCAAAGACTTGAAGCATCTCATATACTACAGGTTTAATACTGTAAGTACATGTACTAGAACAACTACACACCATTTGAATGTATATTTGAACACAGGGTTGTCAGTTCTGAGCTATAGGACTATGGCTGATGATTTCTGGCTTTCACAGGCATCTTCTACATATATGGTTCTGTCCAAATCTGTGGGTTTTTTAAGAACAGAGTACAGGATTGCATTTCCTTATTTGTTTAACAGTTTACCTTACAAAGTCCATTTGCCATGgtatcacagtgtcagtgttgtGTACATCAAAACAGAAGATCCTGATTTACCAGCATTTTATTTTGACCCTCTCATCAACCCCATCTCTCACAGACATGCTGTCAAGGCCCAAGAACCTTTACCAGATGATGATGATAGCTTTGAATTACCAGATGAAATCCAGCCGTTCTTACAGGACAGGCCGCTATATACAGACAATACCGCTAATGGTATTGCTTTATTATGGGCACCAAGACCTTTTAACTTGAGGTCTGGAAGATGTCGACGTGCTATGGATATACCTCTTGTTAAGTCATGGTACAGAGAACACTGTCCGTCTGGACACCCGGTCAAGGTGCGGGTTTCCTATCAGAAACTTCTGAAGTGTTACGTATTGAATGCACTCAAACACAGACCACCTAAGGCACAGAAGAAGAGATACCTGTTCCGCTCCTTCAAATCTACAAAGTTTTTCCAGTCGACCACGTTGGACTGGGTAGAAACAGGTCTCCAAGTCTGCAGACAAGGTTACAATATGCTGAACCTCTTAATTCATCGTAAGAATCTTAACTATCTTCATCTCGACTACAACTTCAACTTGAAGCCTATCAAGACATTGACAACCAAGGAACGTAAGAAGTCTAGGTTCGGTAATGCTTTCCATCTTTGTCGTGAGATTCTAAGGCTCACCAAACTTATTGTGGATTCACATGTGCAGTACAGGCTTGGTAATGTGGACTGTTTCCAGCTTTCTGATGGCTTACAATACATGTTTTCCCATGTTGGTCAGTTGACTGGCATGTATCGATACAAGTATAAGTTGATGAGACAGATTAGAATGTGCAAAGACTTGAAGCATCTCATATACTACAGGTTTAATACTGTAAGTACATGTACTAGAACAACTACACACCATTTGAATGTATATTTGAACACAGGGTTGTCAGTTCTGAGCTATAGGACTATGGCTGATGATTTCTGGCTTTCACAGGCATCTTCTACATATATGGTTCTGTCCAAATCTGTGGGTTTTTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08083	PROCN	PROCN (NUC071) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012592	Domain	PROCN domain	Interproscan
IPR027652	Family	Pre-mRNA-processing-splicing factor 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000244	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0005682	Cellular Component	U5 snRNP	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan
GO:0030623	Molecular Function	U5 snRNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-