Gene detail

Detailed information of HK74SY85_g8984 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g8984	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	ctg59	72353	75446	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g8984

ATGAGGATGATTCCTGTGAACATCAGAAACGTGGATGTAGATTTTCCCTTCAAACCGTACGAGTGTCAAATCGCGTACATGGACAAAGTTATTCAATGCTTACAAGAGGTTGGCATTTCATTCTGGCATCGTTCACACTTGATGCCTGCCTCTGTCTGATATATAGCATCCTTCCTTTGTGGAATTCATATTATTTACAGATAAATACAAGCTCAGTCTTTGCCATTGACTCTTGATGTAAATTAAAACGTCAAATATTATTATTTGCTGAGGTTGTTGTTTACAGTGAATAATAAATTGTTCATCTTATTTCTCTCTTTTTCCCTAGAAACAAAATGGAATTTTAGAGAGTCCAACAGGGACAGGAAAAACGCTTTGTCTTCTGTGTGCAACGTTGTCTTGGAGACAAACATTTGTAGCCAATATGCAATTAGAACAGAGACTTTGCAGTACAGAGATGGAAGCCAGAAATAATGGAAAGTTTAAAGATAATCTAGGTCATCAGTTGCAAGATGCTGCTGGTGTATGGGAGTCGAGTGGTACGAATACAGGtacaattgaagctctcgtaagtgaccatctcatgaattcgaaaaagtggttgtaactagagctggtcgcttatgagaatgagctctcgtaagcaaccacgacctgaaacaatagaaagaggttgcttatgagagcttatatcagaaagctagggacctgtaaatgatgatagcgcctaccacatacgagcacaagtcacatctataaaACTGTGATTGGAAACAGTAATTATTAcagtatggtcgcttacgggagcttataaataaaggaatgaccagttggtaattccaaatagtggtcgcggtcacttacgggagtggtcatttataggagcttttcattacagagttttagtggcaagtcaaacagtattttataatagtggtcataactagagctggtcacttacgagagcggacgcaaagagagctttgtctgtATTACTATAGGGCCATTCCACGGTATTTCAAATGTTACGGAGGGGAAGACAAAACTTTTTAACTACTTGTAGCTATTTCATTATGAAATCATTTAATATTTTTTGTTGGTGGTAACATTGGTATCCACCCATACTACATTTGTAGGAAGAGTAAACAAACATTCATACATCTGTGTATTGATCACAATAAAAAATGTTCAGTGTTACGGAGGGGAACAGAAAAATTGCCTTTTATTGGTCTTGAAGTTGAGCTTGAGATCTCTGTGAAGTTATAATATCTGAGGAGCTTTTTTTTATTTTAATAATGTTTCATATTTACCTGACTTTCTATAATCATGAGAGACAAGAGTTCATCTGCCTTTTTTATTGTGTGAGATAATTGTATACAAGTACTGGTGGTgttacggaggggaagttacggaggggaaAGTTTTGTCCATGACCTAAATATCAAAAGTATCAATACAAAACTCTTAAAAATGAGACTTTTTTAGAATACGTATTGACAAATTAGCTTTCTAAAATCTAAATATATACACACGTGATGCATGAGATTTTTGATTTATCTCACTGCGATATGTCCGATATTGCATCTAAGATGACAGTAGTTTTGAAAGAAAAATACACCTCTTTAGATCAAACAGTGCTTAATACTTCAAAATGCACAATTACACTTCATTTACTATCACCACTAGCAATTTAGCAGCATTGTATCGACTTAACGAAAAGTTCAACATGTTTGCAGATAAAAACCTTCACTCTTCATGTGAATCCCTCTTGCCTACATTATGTAGTAGCTGGAAAAACTAAACAAACTCAAACTTGTATTAACCCTAATGAACCTAATTTCTATGTCAGTTTGTTCAGCTACAGCAAAAATATCTATTTCTGAGAGAAATCATACTTGGTGCTTGCAAAATGTGCTTACTGAAAATTTTATAATTCCCCTTCCATAACACTTTTTTATTTCACTGATCGCAGGAAAGCAAGAGAGGCATAATTATCAAAGGCATTGTGCTAGACTTCACATCTATAACATACAAATCCTGAAATCTTGCTTAGTGTTTGAAAAACTTGCTGACTTAACATAAATAATTCCCCTCCGTAACATATTTTCCCCTCCGTAACACTTTTTTAAGTCACTATATCTCTGGAAAACTAAAATACAACAGATGCAAATACATCTCATCTCTAGTCTCACAAGTCAAATTGGGAGGAATAAAAGTAGCAAAATATTTGGACTTAACATGTAGCTGTAATATTAATTTATTTACCTCAAATTGTTACGGAGGGGAAAATAGCATTTTGGTTCAAATTTTTAATCTGGATAGAAAATTTTTCCAAAAAATTTATTTTATGCTACTGTTAACTGGTCACTGGTACTTTATGTCTACCAGCATAGATTGCCTCAATGTAATCTCTGTGTTTGTAAAATAGAAAAAAAGCATTTTCCCCTCCGTAACACAATTTATCCCTTTTTTCCAAATCAGTGGTATTTTTTTTATTTTCAATTATGTCAGCATGAATTTATTTTTTTATTTTTTTAAGATTTGGTTATCCATCTTCTAGAAAAAATAGTTTTTAATGTCCTGTGACCTTTTTTATTTTTCATTTTTTTTGTCCAAAATACCGTGGAATGGCCCtatagcaacaatctttgtattgcactccatgttttacctaacttgggatggaatttttttctgatctgccaatcaactttggggcgggcgtatgtagatctgtgtaatttattagttAGATGAAGATTTTGTTTCTTAAGTTTTTGAGGTGCTTGGAAAAGAGCCATGTCTATCTTTGTCCTGTATGTGTTTTGTTTCTACTTGACTCACATCTTTTAATTAATATTAGATTTCTCCAGCCAAAGCTATTCTGCCAAAGTTTATTGTTAATTTGGAAAATCTCACTTATAAATTTTATTGTAAGTACTATTGTATGTAATAATTTAAAACAAAGTTATTATTTATATCAGGGTCTTTCTGTGAAATTCCTAAAATTATTTATGCTTCAAGAACTCACTCACAGCTTGGTCAAGTTGTCCAGGAATTAAAGTCTACAGTTTACAGGTATGTAATCAAAGATATGAGGATGATTCCTGTGAACATCAGAAACGTGGATGTAGATTTTCCCTTCAAACCGTACGAGTGTCAAATCGCGTACATGGACAAAGTTATTCAATGCTTACAAGAGAAACAAAATGGAATTTTAGAGAGTCCAACAGGGACAGGAAAAACGCTTTGTCTTCTGTGTGCAACGTTGTCTTGGAGACAAACATTTGTAGCCAATATGCAATTAGAACAGAGACTTTGCAGTACAGAGATGGAAGCCAGAAATAATGGAAAGTTTAAAGATAATCTAGGTCATCAGTTGCAAGATGCTGCTGGTGTATGGGAGTCGAGTGGTACGAATACAGGGTCTTTCTGTGAAATTCCTAAAATTATTTATGCTTCAAGAACTCACTCACAGCTTGGTCAAGTTGTCCAGGAATTAAAGTCTACAGTTTACAGGTATGTAATCAAAGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR014013	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045028	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010569	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0045910	Biological Process	negative regulation of DNA recombination	Interproscan
GO:0070182	Molecular Function	DNA polymerase binding	Interproscan
GO:0090657	Biological Process	telomeric loop disassembly	Interproscan
GO:1904430	Biological Process	negative regulation of t-circle formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-