Gene detail

Detailed information of HK74SY85_g8937 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g8937	DNA-DIRECTED RNA POLYMERASE	ctg58	3609222	3613394	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g8937

ATGCAGCATATTTATGACCTATGTAAGGGTAAGAATGTTTGTGAAGGTGGTGACGAAATGGATACCACGCTTACTGCAAACCCAAACCAAGAAGGTGCAGATGAATCAGATAAAAAAATTGTGAGTTATAGTATCcagtcagctcatgttatagtggacacccttggcttgggactttttttttttgtgtccacaatagcgagagtccataatagcaggagttattttcagataactatcattgAATTTTAAATCCATAGCATTGTTGTATTTCTTATGTATGTGACACTAGATTTAACTCTATTGTTCCAGAATCATGGTGGCTGTGGTCGCTACCAGCCCAAGTTCAAAAAGACAGGTTTAGATTTGACAGCAGAATGGAAGCATGTCAACGACGATTCCAGTGAAAAGAAGATAAATCTGACTGCTGAGCGAGTACATGAAATCTTTAAAAGAATTACAGATGATGAATGTCAAATCCTTGGTATGAATCCTAAGTTTGCAAGGCCAGACTGGATGATAGTTACAGTTCTACCAGTGCCACCATTACCAGTGAGACCTTCTATTATACTTAGTGGATCAGCCAGGAGTCAGGTAAGTTGATGTTTTTACAATAAATACAGTTATTACCATATACAGCATCCACGAAGGTCCCAAAGTAATCCTCCCCTGGTTTGCAAAATGCTCATACAGTATTAATAGTAGAACCCTTACATTGTATATTCAAATTCTCaagagcaaatgtggcaatagatggtaagtgtgttacctacaaaatgagaggtctgtaattcgatcctcaatgacctcacacacgtttttttttttgtggcttgggctttaaatactgtaaaatatagctctgatggagagagggggtaaagtgtgcaccattgTAATGAGCTACTAACTTTCAAATTCTCAAGTGAAATGATTCCCTAGTATATAATTAATTAATTGATAATAATATTATTGAATACAATGAGCTTGAATGAAATGGGATTCCACTGTTAGTTTTATTTCCTGCTGTACTTCAACAAATGTGCTATTATTGTAGGATGACTTGACTCACAAACTGGCTGAGATTGTTAAATCCAACAACAATTTGCAAAGGAATGAACTAAATGGTGCCGCAGCTCACATCATAGCGGAAGATACTAGAATGTTACAATACCATGTAGCTACCTTGATTGACAATGAAATCCCTGGACTACCAAGGGTAAGTGAATATACAAATGATGTTTGGGTTATGTGGTCAATGTTTAGTACATGCCTCCCAAATGTAGATTCCTTCTGTGATTATTTAAACTTTAAAAATACACAAGTTTAGACAAGAGCATGTTTTATTTGTGGAAATATTGGATGCTGGTTATATTATATAAAGGCTTGTGGACAAACTTAGTAAAACAGCTAGATTGGTTTTATACAACTTGCACAATTTTTGGGAGAATTTATTCAGTTGTCAAATGTTCGAATAAAGCTTGCTACTACAATGATTGTGCTATAACTAGATATTTAATaatagagtactaaagtgatgacgtcataaaaaaataaatgttgcttttatacatATTGACTAGGCGAATTGTATTCAATAGGCAATGCAGAAGTCAGGCCGACCCCTCAAGTCTGTCAAACAAAGACTAAAAAGCAAAGAGGGTCGTATCAGAGGAAATTTGATGGGAAAACGTGTGGATTTTTCAGCACGTGCCGTAATCACACCAGATCCTGTTTTGTCCATTGACCAAGTTGGTGTTCCAAGAACGATTGCACAGAATCTTACCTTTCCTGAAATTGTAACTCCATTTAATATTGACAGGTAGGTTTTAGTCTTGAATGTTTGTGTAGTGTCTCTTTGGCAGCGCTCTGATGTTATAGTATTATAGCCAAACGGTTGCACACCTTAGAAGATCACAAATATAAAAAGGAGTCAAGTTTATCTTTGCCTCTGTTTGAACTTGGCTTTCTCAACTCCTTGCTGTCTTAATCACAAACAAATTTCTCTTTGAACTCAGCAGTTAGCCTCAGTGCTTTAGTGTGCTGTATGAATTATATTGCATATTTTAACAATAAATGTTTTTATCATTAGCATGCAAGAATTGGTGAGAAGAGGGAATAACCAATACCCAGGAGCCAAGTATATCATCAGAGACAATGGAGAAAGAGTGGACTTGAGGTTTCACCCAAAACCAAGTGACTTACATCTTCAGTTTGGATACAAGGTATGGTTATTATTGTAACATTGTACATTGTACATGTACAGTATATGGGTCTTTTTTCAAAGGGAATGTTTTAAATTGAAGACAAGGTACACAAAAAGTCAGTGATCTCCAACTGTAGATGATAAAATTCTAagacctagttgagatgccatactttcacattgttgcaaaaatacatggaaagtttggtatctgaatcaatttggaacggctagtttgatctggagtggccttggcattctgcatgcccgggcctgctgaataatactgctctaggttggctgtgaatttagaatggcacttggaaagtacagcttctgaactaggcCCAAAATtcctccagactctttaaattccaaaggagaaatttggttttgttgagacatcacttacagtagctgctgttgcacagactcttgccaacaacttgttAATGTTGTTACATTTCAGGTTGAGCGACACATCAGAGATGATGATGTGATCATCTTCAATCGTCAACCTACTCTCCATAAAATGTCTATGATGGGTCACAGAGTGAAGATTCTACCATGGTCTACATTCAGACTTAACCTCAGGTATGTCTGCCTTCATAGTGTCTAGAAAACATTCtatggttagagcaaatttcgtatgactgtgaaaaggcactgttacggtgcggcacataaatatttcatagtcgtacaaaatttgctctattataaggtgtgcctgtgaagactgaactggactgaactacagagcaaatttcgtatgactgtgaaaaggcactgttacggtgcggcacataaatatttcatagtcgtacaaaagttataaggtgtgcctgtgaagactggactgaactacagagcaaatttcgtatgactgtgaaaaggcaccattacggtgcggcacataaatatttcatagtcgtacaaaagttttaaggtttgcctgtgaagactggactgaactacagagcaaatttcgtatgactgtgaaaaggcaccgttacggtgcggcacataaatatttcatagttgtacaaaagttataaggtgtgcctgtgaagactggactgaactatagagcaaatttcgtatgactatgaaaaggcactgttacggtgcggcacataaatatttcatagtcgtacaaaagttataaggtgtgcctgtgaacactggactgaactacagagcaaatttcgtatgactgtgaaaaggcactgttacggtgcggcacataaatatttcatagtcgtacaaaagttataaggtgtgcctgtgaagactgaactggactgaactatagagcaaatttcgtatgactgaaaagtcacggcacggaatttcatttttgttttcatgcacagcacggtactgacacggtcacaacattcaaaatgtcctCTATTAATACCTTGTAGTCCATATACAGTGTACAATTTTTGAGTGCATTGCAATGATACCCTGCTTATTACACAGACAACCCTTTGTAATGGACAATACTTTTTGTCCCTGTAGATTTGAAGGTCATGAATATTTTCTTCAACTTATAGCAAACATTGCCTTTGATCTGAACACTTTTGTGTCCCTTTAGTGTCCATATTTATGGGGTTACACTGTAAGTCGATCCATAAATCAATAATAATCATTGTTTGTTTCTACCTAGTGTAACAACTCCATACAATGCTGATTTTGATGGAGATGAAATGAACCTTCACGTCCCACAGTCCTTAGAGGCAAAGGCTGAAATCACAGAAATCATGATGGTACCAAGGAACATTGTAACACCACAGTCCAATAAACCTGTCATGGGCATTGTACAGGACTCACTGACTGCTATCAGGAAATTCACAAAGAGAGATATCTTTCTAGAGAAAGTAAGTCTAGGGGTGGCCTTTCAAGGTGCAAGGATAGCTACagggaagccaaaaattgttcgagatagcggtggttcgaaaATGCAGCATATTTATGACCTATGTAAGGGTAAGAATGTTTGTGAAGGTGGTGACGAAATGGATACCACGCTTACTGCAAACCCAAACCAAGAAGGTGCAGATGAATCAGATAAAAAAATTAATCATGGTGGCTGTGGTCGCTACCAGCCCAAGTTCAAAAAGACAGGTTTAGATTTGACAGCAGAATGGAAGCATGTCAACGACGATTCCAGTGAAAAGAAGATAAATCTGACTGCTGAGCGAGTACATGAAATCTTTAAAAGAATTACAGATGATGAATGTCAAATCCTTGGTATGAATCCTAAGTTTGCAAGGCCAGACTGGATGATAGTTACAGTTCTACCAGTGCCACCATTACCAGTGAGACCTTCTATTATACTTAGTGGATCAGCCAGGAGTCAGGATGACTTGACTCACAAACTGGCTGAGATTGTTAAATCCAACAACAATTTGCAAAGGAATGAACTAAATGGTGCCGCAGCTCACATCATAGCGGAAGATACTAGAATGTTACAATACCATGTAGCTACCTTGATTGACAATGAAATCCCTGGACTACCAAGGGCAATGCAGAAGTCAGGCCGACCCCTCAAGTCTGTCAAACAAAGACTAAAAAGCAAAGAGGGTCGTATCAGAGGAAATTTGATGGGAAAACGTGTGGATTTTTCAGCACGTGCCGTAATCACACCAGATCCTGTTTTGTCCATTGACCAAGTTGGTGTTCCAAGAACGATTGCACAGAATCTTACCTTTCCTGAAATTGTAACTCCATTTAATATTGACAGCATGCAAGAATTGGTGAGAAGAGGGAATAACCAATACCCAGGAGCCAAGTATATCATCAGAGACAATGGAGAAAGAGTGGACTTGAGGTTTCACCCAAAACCAAGTGACTTACATCTTCAGTTTGGATACAAGGTTGAGCGACACATCAGAGATGATGATGTGATCATCTTCAATCGTCAACCTACTCTCCATAAAATGTCTATGATGGGTCACAGAGTGAAGATTCTACCATGGTCTACATTCAGACTTAACCTCAGTGTAACAACTCCATACAATGCTGATTTTGATGGAGATGAAATGAACCTTCACGTCCCACAGTCCTTAGAGGCAAAGGCTGAAATCACAGAAATCATGATGGTACCAAGGAACATTGTAACACCACAGTCCAATAAACCTGTCATGGGCATTGTACAGGACTCACTGACTGCTATCAGGAAATTCACAAAGAGAGATATCTTTCTAGAGAAAGTAAGTCTAGGGGTGGCCTTTCAAGGTGCAAGGATAGCTACagggaagccaaaaattgttcgagatagcggtggttcgaaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00623	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF04983	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF04997	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000722	Domain	RNA polymerase, alpha subunit	Interproscan
IPR006592	Domain	RNA polymerase, N-terminal	Interproscan
IPR007066	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR007080	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR042102	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR044893	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR045867	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-