Detailed information of HK74SY85_g22497 in Paraphelliactis xishaensis sp. nov. Gene info
Gene IDAnnotationContigStartEndStrand
HK74SY85_g22497PNAS-3 RELATEDctg29119557161973423-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14382ECR1_NExosome complex exonuclease RRP4 N-terminal regionDomainInterproscan
PF15985KH_6KH domainDomainInterproscan
PF21266RRP4_S1RRP4, S1 domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR004088DomainK Homology domain, type 1Interproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR025721DomainExosome complex component, N-terminal domainInterproscan
IPR026699FamilyExosome complex RNA-binding protein 1/RRP40/RRP4Interproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR048565DomainRRP4, S1 domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR21321PNAS-3 RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071034Biological ProcessCUT catabolic processInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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