Gene detail

Detailed information of HK74SY85_g20324 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g20324	30S RIBOSOMAL PROTEIN S1	ctg236	205542	209167	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g20324

ATGAGGGGAGCTGGTAAGTAGTTTTCAGACCCCTAGTACTTATAAACCAATCAAAGTGCCAAATAAAGATGCTTCTGGGAACACATCCTTAAATcctgatcccataaaattgattgatccctgatctcataaaattgattgatccctgatcccataaaattgattaatccctgatcccataaaattaattgattccctaatcccataaaattaattgatccctgaccctgaTTATCCTGAGTTCAAAATCTATTAGTCTGTCGAGTTTGCTAGTCTATTTTCTCTCTCTCTCTCTTCTAGTGTCCATAGGACGAAGACTACAAGATCCTTTATTAGAGCTTGTGAAAATTGAACCTAAGCACCttgggattggaatgtatcaggttagtcggtatcagggatcaattaattttataggatcgaggatcaaAAGTTTGGTGAATTTCGGGATCAGGGACGATCAGATTTTAACAGAAAGGGATCAAAATTTTGTCAAATTTTGGAATCATGGATTGCTGGTTTGGTGTGTAAAACTATGCTATGAATTAAGAAGAAATATATGTTGTTATGACCCAGTTTGATTTAGACCTTTAATTACTAGTCTTCTTGATTGCCTGTGATAATGATGGTTTTATTTTGGTTTATACAGCATGACATTCCTGAATACATGCTACGTGGTGCGTTAGATGGTGTACTCACTGATTGTGTTAGTTTAGTTGGTGTTGATATCAACGCTGCTGGTGTAAGCACTCTCAAGTAAGTCATTCATTGAATTCATAGACCACACCCTCAAAGAACACTTCCTGGTCATCTTTTGCTTCAATACGCGTTTGATACATGAGTTGAGCGCCGTCAGTGGAAAATCAGTAATATTGGTACTTTTTCCCTGTGGCCATCTGGAACAGGCTGtaggcctgggtcaaaactcaaacttcacatgtcccgaacgcaattaaaagaaaagacaattaggcagtgttctatgatctgattaggttcggtacatgagtagaacatgtctggaacggtcctctattcatgtgccaaacgcaatcagaacaagataattaggcggtgttctatgatctgattaggttcggtacatatgagtagaacatgtctggaacggtcctctattcatgtgctgaacgcaatcagaacaagataattaggcggtgttctatgatctaaggttcaggttcggtacatgtgtggaacatacctgaaacagtcctctattcatgtgctcaacacatttaaaacaaattaacaatattagtggtctttgatctaattaggttcagcacatgtgaaaagttcaacgtttgacccaggccttaCTTTGCCCGTCAACACTGATACATTACGTCTGACAACACAAATATTTTTGTGTGTGTTCGTATTGCAGTTCACACAGTAATCATTTTCACCTGAAAAAAAAACAAACCTTTGAAAACGTTTTCCACTCGTGGAATCAAGTGGTTGACAATTTGTGGATAGTGACCCCCCTACCCACCCTAAGTAGGGAATCGCGACCATGCCTATAACTTAAATAGACCTATTGTTTATTTAAAGGCGTTTAGCAGGGCTGAATGAGAAGAAAGCCAAGGCAATACTCGAATGGCGAGTACAGAATAACAGATTTATTAGCCGCAGTCAACTCTTACAAGTGAAAGGAATTGGCAAAAAGTCTTATGAACAGTGTGTCGGATTTGTGAAAATTCTCCCTGTGCCACAGGAAAATAGTTCCAATGTTAAAGTAGAAGTCATCATTCTtgatgacgatgatgacgatgatgatgtgaCAACGGGATCCAAACGAAAGCGACCTCAAAAATCTAAGGGCTCAAAACGTTCTAAAGCTGAACCAGCTCAACCAGTGGCGAATCCTCTGGATAGGACAATGATTCATCCCGAGTCGTACGATTTAGCAGAAAGGTAACTACATTATTTATGTTAtttatttattttgctttgccatggtataatagtaaggaaaaatagaatgaaaaaaataaataacgtttctggcagggtgcccacaacagtgttaaccaattactgtgTATAAAGGATTTGTTGTTGTCGCtagagcagattttgtatgactgtgaaatgttccgtaccgtgccgtgcagtgcctaagcgttttgattggtcaacatgtttcacaatcaaTGAAATCTGCTCTATGGCTGGTGCTTTAATTAtgatgctgctgttgctactggttctgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttggtggtggtggtggtgcagttgtaggtgctttagttgttggtttagcgatacatctttggttgttgctgttatcgattattgtctttgtttctactgttattgttatCTATATTTCTCTATGAACAGATTAATGGCGAAAGTATATTTGTACACAAACGACATTGGAACGCCACACATGGTGAACACTATCGATAAACTTCTCGCcagacaaagtaagtggtaataaaacaatgtgaaacataaatggaaactagctatagtgagtgaactagtatgggctgcgttggtgtgaaacagtatgaatgtgaaaCAATATAAAACAGTGAAAAACCGCGCGTACGCAGACACCACTGAAGGAAGGTTAAAAACTCCGTGTAggtgtcttgcataggggtggtgtccgcttaggggctgtatccacttagggtaggtgtccacttttaggtatccacttagaggagatgtgcacttataggaggtgtccgcttaggggaggtgtccacttagggtaggtgtccacttatgggaggtgccccgtttacaggaggtgtccactttagggggtgtccactaccagtggttccactgtaACACCGTTTGTGGTTTACTCTGTGTAGGTGCTGAAAGTCTGGCCCAGGAATACGGTGTTGGAGTTTCAACGGTTGAGCTTGTTTTGGACGGATTAAGACAACCCACAGACCATGACATACGATCAAGTAAGAAATCAGTCTGCCCTATTTTACCGTGAACGCTGATGAACGTGAACACTGATGTCGATGTTAACGATGATAGAGGGCGATAATGATGATTGATAGTGACAGTTGTGTTTGTGATCGTCTTATTTTGATGGTGATGCTACGCGCTATCCTGGGTATCCATAACCATATATAATGATGATAaccttttgtaagaaatattaattttttaggagcgatttgaaaagattacatgcaaggtgtaaggtctcacccactccccaaccatttataaaagtgctccgccgtcACTGATATGATTTGTTGTTGTTGTGTTATCAGGTTTCGAAAAACCCATTTTCAAGAAAGGTCTTATGCTCTTTGAAGATCTCACTCTGGGAATGCATTTATCTGGTCGCGTGACCAATGTCACGACATTTGGTGCATTCGTAGACTGTGGAGTAGGGCGTGAGGGTTTGATCCACCAATCACAGTTCAACAAGTGTGACGAACCGTTGTCAGCAGGAGATGTAGTGGACGTCAAGATCTCTGGTGTCGATCGGAACAAGAAACAATTTCAGTTGAGTTTAGAGTCAGTCAGACCGAGATTGCGTTCTAAATCACTCGCTTCAACTGCGTACAGGAAACAAATGAGGGGAGCTGTGTCCATAGGACGAAGACTACAAGATCCTTTATTAGAGCTTGTGAAAATTGAACCTAAGCACCttgggattggaatgtatcagCATGACATTCCTGAATACATGCTACGTGGTGCGTTAGATGGTGTACTCACTGATTGTGTTAGTTTAGTTGGTGTTGATATCAACGCTGCTGGTGTAAGCACTCTCAAGCGTTTAGCAGGGCTGAATGAGAAGAAAGCCAAGGCAATACTCGAATGGCGAGTACAGAATAACAGATTTATTAGCCGCAGTCAACTCTTACAAGTGAAAGGAATTGGCAAAAAGTCTTATGAACAGTGTGTCGGATTTGTGAAAATTCTCCCTGTGCCACAGGAAAATAGTTCCAATGTTAAAGTAGAAGTCATCATTCTtgatgacgatgatgacgatgatgatgtgaCAACGGGATCCAAACGAAAGCGACCTCAAAAATCTAAGGGCTCAAAACGTTCTAAAGCTGAACCAGCTCAACCAGTGGCGAATCCTCTGGATAGGACAATGATTCATCCCGAGTCGTACGATTTAGCAGAAAGATTAATGGCGAAAGTATATTTGTACACAAACGACATTGGAACGCCACACATGGTGAACACTATCGATAAACTTCTCGCcagacaaaGTGCTGAAAGTCTGGCCCAGGAATACGGTGTTGGAGTTTCAACGGTTGAGCTTGTTTTGGACGGATTAAGACAACCCACAGACCATGACATACGATCAAGTTTCGAAAAACCCATTTTCAAGAAAGGTCTTATGCTCTTTGAAGATCTCACTCTGGGAATGCATTTATCTGGTCGCGTGACCAATGTCACGACATTTGGTGCATTCGTAGACTGTGGAGTAGGGCGTGAGGGTTTGATCCACCAATCACAGTTCAACAAGTGTGACGAACCGTTGTCAGCAGGAGATGTAGTGGACGTCAAGATCTCTGGTGTCGATCGGAACAAGAAACAATTTCAGTTGAGTTTAGAGTCAGTCAGACCGAGATTGCGTTCTAAATCACTCGCTTCAACTGCGTACAGGAAACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF12836	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF17674	HHH_9	HHH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029	Domain	S1 domain	Interproscan
IPR003583	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR023323	Homologous_superfamily	Tex-like domain superfamily	Interproscan
IPR041692	Domain	HHH domain 9	Interproscan
IPR050437	Family	Bacterial ribosomal protein bS1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10724	30S RIBOSOMAL PROTEIN S1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-