Gene detail

Detailed information of HK74SY85_g17013 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g17013	DNA LIGASE	ctg164	258272	263724	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g17013

ATGGAAATGGGTAGGTGCATGAGCAAGAAGTACATGTACAGTTTACACTGTAACTGACAACCGTGAACTGATCTAGTAATTAAAATCATCTTAGCATTGTCTTGAAAGTCATGATTGACTTCCATTTGTATCAGGGACTCTGCTTTTGTTTGATTCTCTTTGTTTTTTAATATTATTTACTCCATCACATAGGCAGTGCTAGCCAGAATGGCACATCAGCATCAAAATCCTCCAAAGCAGCAACATCCGCTACAACATCTGCTGTTAATGAAGATGAAAACTTAATTGCAGAGTATGCAAAGTCAAGTAGATCTTCTTGTAGAGGATGTGATGAAAATATTGAAAAAGTAAGTGGACAACTGAAAAGTTACACTTCTCcaaatgccattacgaaatcaaatgccattacgaaatcaaatgccTCAAAACTATTAAACAGGTGTACATTGAAAAGATTTTGCTTATAATAAAGCACATGTTCAGTGTAATATATACTATGCATTTCTTTAATAGGGAAAGCTCCGTCTTGCCAAGATGATGGAACCTTCTCCTGATTCCAATGCACCCCAAAGTATAGGACTCATACCAAGATGGCATCATGTTGACTGCTTTGTAGCGGAGCGTGCTGACCTTGAGGTTGATGCTAGTGTCACAGCAGAGTGTTTTACTGGCTTCAGGCAGCTAGAAAAAGAAGACCAGGCAACATTAAAGAAGAAACTTGGAGCAAGCAAGGAGACAAAAGCTGCAAAAGGGAAGAAAAGGAAAATTAATATTGAGGATAAGCCTCagaaaaagcagaaagcagcagaggaagaagctgaagaaAATGCATTGAAGGTACATGTCGACATAATTATCCTaagaaatataaaaacgtgtgtgcatgcaatgtgcagttgtagagattatgcagggattgaacagcacacaagagtgttaggagttcaggcatgacacgtagtggagtgcttctcaatacttctcgagtattctgctcattcctcaagtgctctaaaactgaacatagcacagctgacaagttttctatttctattttttataaaatacaattattactattttaatgcatattttctattttgttcagtacacggatgtttgttctcattgaacatatgccatatgcatcctttggccaatcagagtgcacgttatatctagatgttttGAGATGCTACATATATTATTGCTACTACAATTTCTAGTAGTAAACTTTGTATTAACATTTCTAGGAGCAAAACAAACTAGTGTGGAAAATCAGAGATGACTTAAGGGCTGAAGTTCCACTCAAAGTACTGAAAGAAATGCTAGATGATAATGGTCTTAGTTCCCAAGGTGGAGAAACGTCTGTAAGTAACCATGGATACACTATTCAATGCATCCTCGGgaacccagcgggaattattctgtcgcttgtttcttgcttccagagtatatacccctgggaacgaagtctattagcatttgttctggatgtcagaatccaatatggcagctgttcaacggtttatatactttgtctagatatacttgatgctgattgatcgaccaatcagaaacaagatgaattttaacttccggaacaagttctaacagacaacgtttccaggggtatatacgaaaacgagcgaacagaataataccTATTCAATGCAGTTGAGACCCATCAAACAAAAGGTGTTTAAATACCTTCTGTTGGCATCATAATTGTAGAGAAGTTTACTCATGAATGTGGAAAATACAGTATAGTACAGAGCATTTTATGAGTGTTTGATTATCAAACTTGATTGTATAATTAAGCTCAATTACCATCAGTGCAATTCAGTGCGATTAATTCACTACTTCGACGATGCTTAAaggcctagctacaaaaattccgaaaaatggcctaaaaatctttccggataatctccaaaaaattctaaaaatctccgttttatctctaaaaatctcgtaaacacttctaaaaatctccgttttatctctaaaaatctcgtaaacacttctaaaaatctccaaaaatctttaaaattttctttcgaaattagcgtatttttgcaaaaatgcgggttccctgtggtggaattgtatggatatagtggtagaccctcatccccaacaaacatctaacttagtcagccagttcagcagcctcgactgagtccgccattttgaacatacatgccttacatgcaaggcatgctgggagcataaccgctgactgacattgtgtgtgggggggaggggtgtttacaagcttcagaactacttaaattgctaattttcacacgttattggttggaattttttaatcttaataatttttatgacatttctctttgaaaagctcattaatttctaaaaatctttttttcttctaaaaatcccaataggctctaaaaatcccccccaaaaatccggatttttgtagctaggcctagACGATGCGGCAGCCATTTTGAATCGCAAGGCACTATGGGGCGTCCAGGGGGCAAACCTGTCAAATTAAAAATAATTTGAGCAAATCCTGGTGTTTCCTGTCACGTAATAATCAACTCTATTTAAAAGCTTTGTCCAGATCTTGTAGCTATTTTTCTCTCGGCATgcatttccagaatcgaagttcgtttcttccatcaaagatgctaatatgaggcttgatgatatatttatctttgtatcgtctgtcattgttacaaccaaagatggcacattgatcacctttacccatAGTAAGACAGGAACGTCAAAAAAGAGTAGGACGTAAATTTACTGCCTCACTTAGCCGCCATCTTTGGTACTGTGTAGTTACATATGTACCAAGTCAAGCGGGCCACCCCGCAGATCTCGAGTACTGTGGGGCGTCCAGGGGGCAAAGCCAAAACAATGCCTTGCGATTCAAGATGGCCGCCGCATCGTCGAAGTAGTGAATTGAATGTTTGATTTCATTCACACTACACTTGGatatatatatattattattaaacatgtcattacttgtatacatgtatacaatatatTAAATGATTCACGATTAATGCACTTtatgcctcaaaacacaaatgataatattggttatgaaagtgcatttatatgctgagtttgtttgcaaaggcaatccatcagacagacatggcaaaaataATTTCTTTATGCATACAGATACTTAATCGATGTACTGATGGTATAGCTTTTGGACAGCTTCTACCATGTACTGAATGCAGTGGTGGCATGCTTGTTTTTAGGTAAGGGTTTAGCTGCTTTGCTTTGTATTGTATAGTAATTTGGATGACCTATACCATTCTTGtattgggttacctgtgttaaatttagatttattgggttccctgtgttaaatttagatttattgggttccctgtgttatatttagatttattggattccctgtcttatatttagatttattgggttccctgtgttatattagatttattgggttccctgtgttatattagatttattggattccctgtcttatatttagatttattgggttccctgtgttatattagatttattgggttccctgtgttatattagatttattggattccctgtgttaaattttgatttattgggttccctgtgttcattctcgtccccagagcctgcgctattgccaaccagtggaaggcaatttccaaaggctctgggtcaatccacagcctgccgttatatgattggatgaaaaaacaatacataaatactggaagtaaaattattttgtAGTTGAATCAAAACAAACCGTTCAAAATTCATCGttcttgcttgggaaaaataaatctcattaaaaataaaatagctggattcattaagactctctgctgagtcacagaaaagacagacacaggagtttgaatttgaaagattcaaaagaggacgaagtaaaaagtccgttagaaaatgaaaatcgcgtggcgagaacaacatctatattcgggcaaaagtaaactacttgtctggtgaggacatttgcaactgcacctaaaggtataccagaaatagttctcctggtcatgataagcatacaatggctaattgtcgaaagtcagggatgagcgtaaattatttgcaaactggattcgtcgttgtaaactgatcttttgccgtacactcgtgtctctacttgctccactgtccacagtcgtcttctaggatgcacacatccatatatattattcaactttctttaactgatcttccatgagggcatttagatgcaaaattctcaacaaaggctcgactgaaggtcaatataatgttttgctttccatgacgcagggatcccaaactggaaacaaagaatcatgtttccggttattggattgacccagagcctttggaaattgccttccgctggttggcaatagcacaggctctggggacgagaatgccctgtgttatattagatttattgaattccctgtgttatatttagagttattgggctccctgtgttaaatttagatttattgggattcctgtgttaaatttagattcattgggGTTCCTGCTGATTTTGTTCTGGTATAGCGTTGGTATTCCAGTGGATTATAGCCGGAtttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggcaggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatagtccctttatggccggcaatactcccttttcaagttgttataaacccctggacttcttgacaaaagatgcatttattcagccttagcatcgagtcaaggtaaattattcaaaaaataccaatgagaaaagcaaaaattgttgatggtgaacaatacaataatcgattttattcccatgggtttttattgaagtggaggctaattaaggctgagtaaatgcgtcttttgtcaagaaatccagcagtttctaacaactcgaaactggagtattCTGGATgtgtccacttacaaaggtgtctgccttactgaggtgtgcacttactgaagtatctgcttacagagatgtctgccttacagagatgtctgccttactgaggtgtgcacttactgaagtatctgcttacagagatgtctgccctacagaggtgtctgccctacagaggtgtctgccttacATGGAAATGGGCAGTGCTAGCCAGAATGGCACATCAGCATCAAAATCCTCCAAAGCAGCAACATCCGCTACAACATCTGCTGTTAATGAAGATGAAAACTTAATTGCAGAGTATGCAAAGTCAAGTAGATCTTCTTGTAGAGGATGTGATGAAAATATTGAAAAAGGAAAGCTCCGTCTTGCCAAGATGATGGAACCTTCTCCTGATTCCAATGCACCCCAAAGTATAGGACTCATACCAAGATGGCATCATGTTGACTGCTTTGTAGCGGAGCGTGCTGACCTTGAGGTTGATGCTAGTGTCACAGCAGAGTGTTTTACTGGCTTCAGGCAGCTAGAAAAAGAAGACCAGGCAACATTAAAGAAGAAACTTGGAGCAAGCAAGGAGACAAAAGCTGCAAAAGGGAAGAAAAGGAAAATTAATATTGAGGATAAGCCTCagaaaaagcagaaagcagcagaggaagaagctgaagaaAATGCATTGAAGGAGCAAAACAAACTAGTGTGGAAAATCAGAGATGACTTAAGGGCTGAAGTTCCACTCAAAGTACTGAAAGAAATGCTAGATGATAATGGTCTTAGTTCCCAAGGTGGAGAAACGTCTATACTTAATCGATGTACTGATGGTATAGCTTTTGGACAGCTTCTACCATGTACTGAATGCAGTGGTGGCATGCTTGTTTTTAGagatgtctgccttacagagatgtctgccttactgaggtgtgcacttactgaagtatctgcttacagagatgtctgccctacagaggtgtctgccctacagaggtgtctgccttac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00645	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan
PF21728	PADR1_N	PADR1, N-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001510	Domain	Zinc finger, PARP-type	Interproscan
IPR036957	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR049296	Domain	PARP1-like, PADR1 domain, N-terminal helical subdomain	Interproscan
IPR050800	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459	DNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-