Gene detail

Detailed information of HK74SY85_g10684 in Paraphelliactis xishaensis sp. nov. Gene info

Gene ID	Annotation	Contig	Start	End	Strand
HK74SY85_g10684	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	ctg70	419689	422661	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HK74SY85_g10684

ATGGTGAGTTCGACTGGAATTTTAAATCCATCTTCATCGCTAGTTTTATCCATCATACGACCCTAATAATTAGCTCAAATAAAAGCCTAGTTATCATTTCATACAATTCTTCTCTTATTTCCCAATATAATCCTCGATGTGGTATAAAACTTTATCACGTTTTCATGTCAACAGTCAGAGGCAGCAGATCAACCAAAGAAGAAGCGTACCTTTCGTAAGTTCACCTATCGTGGCGTAGATCTTGACCAGCTTCTTGATCTCAACCATGAACAGCTTATGGAGCTCTTGAACTGCCGTCAGAGGCGTAGACTAAGTCGTGGTCTTAAGAGGAAGCCCCTAGCACTCATGAAAAGATTGAGAAAGGCCAAGAAGGAGGCTCCACCAATGGAAAAACCCGATGTTGTGAAAACACATCTGAGAAACATGATTGTGGTCCCAGAAATGATTGGTAGTGTCGTGGGTGTTTACAATGGCAAGACCTTCAACCAGGTTGAGATCAAGGTATTAAAGTTGTAGTACACTTCGATTTTACAGACACATTTTTGTTGACTCTCTCTCTAAACGAATTGATCATGCTTAGTTTGGAAATAACTTTCTTCACAGTGAAACTTTACTAGCCTAACATACTGATAACATCTGATATTGAAGTAGAGTTCAGGCAAAATTACAGTTGATGTAAGAATCTTGCCTGATTTACTTTTTGTAGTACATGAAACATGTATAACACATCAGCTGTTGCATTGATACTTTTCAAAtataaaacgttttccgtgaagggctcggttttacacaacagctctcgacttctcccaaactgtcccgcgtgtttatatcaggctatgtaaacacaggaaaacgttttatatttgttttataaaataattatacactaacctgacaattttctgcgttaaaatcggcTTACACTGCCAATGGGACGttccattaattttcgcacccccctatggaagacattttttagaaagttcagtgggccctgtcggaatcctcaaataccctaaaattagacctataggaattttcactttgctcttaaatttaccccctggaagacatattttagaaatgaccctgtcggaatcgtaattttacgaaaatgggacccttcggaatcgtatttttacgaaaaaagccctgttggaatcatatttttgcgaaaatgggacccttcggaatcgtatttgttggaagagtagccctgttggaaaaaggtcttccataaggggagtgcgaaaattggacccttcggaatcgtatttgtcggaagtagcccggaaaaaggtcttccataggggaggagcggaaaATTAATGGAATGTCCCAatgtgcccggcaggaatatcactgcacttttatcacttttatggttgaaattttaagtccttttcgctgaaatagctgcaatgtgtcagtggactgtttataaaatttattgaactataacgtgatgattaatattgataacaacaaattatttgtttattgacgagaaagacgatctcgattatgatttcacgctaatttttgactaattcacagttctgttataactgagtacagaaacgtctcagcagaaaggattttgccaggaaaaacacatttgagaggctttgttgaaaagcttttttaaaagtctgatagttttttttgagattttaattttgttagaagttcaaacatgggctagcgatttgtggatttatctgaaaaattagttcaatgtttgtttagagtgcaatttagaaaagcgtgaaaactaaatcactaattaatactaaatagcactaatgaaacaatagaagacaatggtaataacactagtactatttaaagttagtactatttcacgcttttctaaattgcactctagcaaactgccgatattagatagaaattcgtgttttaactaaaaacgatacaaaaactatgtttcatgtgttagcttcgtaaattaggaggaaaaaggagcaatgcagaaaacaaaaaaaaggcatgacgaaccgtgtttacatagcctcatataaacacacttctcagccaatcagaatgcgcgtagtatttgatgtattttataaTCAAATTTTATCCACATATCCATGAACATATTACTTCTACTTTCCAAACTTGAGTCGCTCACTGTACAACAAGAGTGCATGGCCATATCTACTTAAAATCTggcccctgttgcacaaagagtggatagcactgtctgttggataaatccttatccagtgggtaaaatgatgctgttatccaaaaatttgttcactggataagtattttccactctccactcttcatgtaactgggaccTGATATTATCTCATGTACAATCTGACGTATTGCTGTAAACATACCAAAGGACTGTTACTATGTGTTGTACAATCTGTAATATTACCAGATACATTGTACTtgtttcacaaagcattcgtaacgtatgagtactgtactcataaatccaaaatcatgattgtttttcttggggattcacaactttttaagtcatttccCTTCACCTGAATGTGATcttcctccatcagtgctcctccccaggggtatttaaagctatgagcagactttggggggggctgtattatacacccagtttagagggaagttgaaacaaggatgtgagaattacacaacgacgggagtcaaactgcaaacctcctttagaaggcagcacattaaccaactaagccacccttgttccttgttccttgttccttgttATGAATGCTTAATTGTGAAACGGGTCAATATATACATTGGTTTAAACCAATAAGTGACCCACTATTTCATGTCAATAATGACAATACTGTTGTTCATGTCTTTCAGCCTGAGATGATTGGACATTACCTTGGTGAATTCTCCATCACCTACAAACCCGTCAAGCATGGAAGGCCTGGTATTGGTGCAACTCACTCATCGCGATTCATTCCTCTAAAGTAAATGTCAGAGGCAGCAGATCAACCAAAGAAGAAGCGTACCTTTCGTAAGTTCACCTATCGTGGCGTAGATCTTGACCAGCTTCTTGATCTCAACCATGAACAGCTTATGGAGCTCTTGAACTGCCGTCAGAGGCGTAGACTAAGTCGTGGTCTTAAGAGGAAGCCCCTAGCACTCATGAAAAGATTGAGAAAGGCCAAGAAGGAGGCTCCACCAATGGAAAAACCCGATGTTGTGAAAACACATCTGAGAAACATGATTGTGGTCCCAGAAATGATTGGTAGTGTCGTGGGTGTTTACAATGGCAAGACCTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGACATTACCTTGGTGAATTCTCCATCACCTACAAACCCGTCAAGCATGGAAGGCCTGGTATTGGTGCAACTCACTCATCGCGATTCATTCCTCTAAAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00203	Ribosomal_S19	Ribosomal protein S19	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002222	Family	Small ribosomal subunit protein uS19	Interproscan
IPR005713	Family	Small ribosomal subunit protein uS19, eukaryotic/archaeal	Interproscan
IPR020934	Conserved_site	Small ribosomal subunit protein uS19, conserved site	Interproscan
IPR023575	Homologous_superfamily	Small ribosomal subunit protein uS19, superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-