Gene detail

Detailed information of ENSZWYP00000017057.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000017057.1	LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN	chr2	24483331	24496635	+

Gene Structure

More details in Jbrowse Sequence

CDS

ENSZWYT00000017057.1

ATGTTGTTCAAGGCTATCGTTGGCAGGGAATGTGGATACAAATTCAGATTAAACCTAAACGAGATTGTTGAGGAATTTCGCTGCATCCGACTTGACAACCACTGCGTGGAAGGACAGGAATATGGGGATCTCATCCCTCCCTTGGCCTGCAGCTTCTCCAAGGTGGATCCACACATTGTGGCTGTCGCGGATGAGGATGGCGGCTTGGTCATCTATGACACAGAGAAAGTTGGCCCACGTGCTGTCCAGCATGACTGGTTGACCCACACGAATGCTGTATTTGACCTGGAGTGGACACCGGCCGAGAACTCGCTGCTGACGGCCAGTGGGGATCAGACCATTGTCCTGTGGGATGTGACAGAGGAGGAGAAACTGGGGACATTCCGGGGCCACACAAGCAGTGTCAAGACAGTGCAGTACCGCCACACCGATAAATTTGTGTTTGCCTCTGGGTCACGAGACGGGCACATCATGATATGGGACAGTAGAATGAGGTCAAAAGATGGGTCCATCCAGCCAGTGAACATTCTTCATGATGCACATAGCTGTCACCTGCAGAAGACAGGCAGGAAGAAACAGGAAACTCACCAGAGTGTGACAGCAGTTGTCTTTCAAGATGATCACACACTTCTGTCGGCAGGCTCAGTTGATGGGTCAATAAAGATGTGGGATTTGAGACGGACTCACTGCACAAAGAAGTCAGGACCAGTTCCAAAATACAGCTTTGACTATGCTGGAACAAGCATCCGTGCTCATGGATTCTCCAGTCTAGTGTTGGACTCGAACAAGACACGTCTTTTTGCAAGCTGCATAGACAATGTCATCTATCAGTTTGATTGTGTCAGTCTAAAGCCAAAGCCAGTCGCCTGTTACCGGGGACATGTCAATTCAACGTTCTATGTGAAGACCTCCCTGAGTCCCGATGACCGCTACCTCCTCAGTGGCTCCTCTGACGGCAACGCCTACATCTGGCCTGTTGACCTTCCTGTCACTTCACCACTGGCCTTGAAAGGTCACACAGGTGAAGTGTCAGGGGTCGCATGGTGCCCGGCCGATTTCACCAAGTTGGTGACTCTTGGCGATGACAACTCGATGTGCTTCTGGCGTTTGACGCGGAGGGCGGGGTTGTTACCCAAGCTGCCCGAGCTGATCGGTTGGACAGAGAGAACTCACCACGAGATAGGTATTTCTGTGAAGTCACCTCCCTCTGCTATATCTGCATATCTAAAGTCACCCGTGAAAGGGACGACACTGCCCCAAAGTCCCGCAAAAGTGTCGCCGGCGGTTCGGAGGAATCTTGTTGCAATGACAACCACGACGGTTCGCAGCAGTCTGATTTCACCGTCACTCTCGAAGTGGGTGTCGGCAGCCTCTAGCAAAACTGGTTGGTCGCCACGAAAACTGCAAGTGACACCAAAGAAATGCACAGTGGCAAACACACCGAGTCACATGACACAGTCATCAGAGGAGCAGGTTATGAAAGAGCGGGTAAAACGGAAACTTTGTGATGATGTCATCACCAGCAGCATCACCGTGGAAAATGGACGACTTACACCAAACAAGAGACACAAATGTTCTGATGAAAGTGCAAGGAATACTACCTTGTCTGTTCGCAGCAGCCGCAACAAAGATAGCCAACCCATAGTGACACCATTAAAGAGCGATGCCCAATCGTGTGTGAGGTCACGTGAGGGGTCATTTGCGGCTCACGATGACTCGGCTCGAAAGGCGTTATTCCCCTTGTCCGACGGATCGCATGATGTGGGTCTGGCGTCCAGACTCCTACAGCCTCTATCGTCCCCACAGAGTCCGTCAACATCGGGGGCACTGCTCCCACGTTTTTGTGGGACCAATCACCAGTCACCCACACAGGGGTTACCTAACTATGTACTGAACCCCGAGCCTCGAACCCCGGTGGGGAAACTGCCACCAAAGTTGAACAAAACTCCAACTTGGCTGACAAGGCTAGCCTGTGATAAGTCATCCCCTGGTCAAACAAATCAT

Transcript

ENSZWYT00000017057

ATTTTTAGGTTGCGCATTTTTTAATCGATCCTGAGAAAGACAGAAAACAACGCATAGCAGCACCCTGTGACAATGTTGTTCAAGGCTATCGTTGGCAGGGAATGTGGATACAAATTCAGATTAAACCTAAACGAGATTGTTGAGGAATTTCGCTGCATCCGACTTGACAACCACTGCGTGGAAGGACAGGAATATGGGGATCTCATCCCTCCCTTGGCCTGCAGCTTCTCCAAGGTGGATCCACACATTGTGGCTGTCGCGGATGAGGATGGCGGCTTGGTCATCTATGACACAGAGAAAGTTGGCCCACGTGCTGTCCAGCATGACTGGTTGACCCACACGAATGCTGTATTTGACCTGGAGTGGACACCGGCCGAGAACTCGCTGCTGACGGCCAGTGGGGATCAGACCATTGTCCTGTGGGATGTGACAGAGGAGGAGAAACTGGGGACATTCCGGGGCCACACAAGCAGTGTCAAGACAGTGCAGTACCGCCACACCGATAAATTTGTGTTTGCCTCTGGGTCACGAGACGGGCACATCATGATATGGGACAGTAGAATGAGGTCAAAAGATGGGTCCATCCAGCCAGTGAACATTCTTCATGATGCACATAGCTGTCACCTGCAGAAGACAGGCAGGAAGAAACAGGAAACTCACCAGAGTGTGACAGCAGTTGTCTTTCAAGATGATCACACACTTCTGTCGGCAGGCTCAGTTGATGGGTCAATAAAGATGTGGGATTTGAGACGGACTCACTGCACAAAGAAGTCAGGACCAGTTCCAAAATACAGCTTTGACTATGCTGGAACAAGCATCCGTGCTCATGGATTCTCCAGTCTAGTGTTGGACTCGAACAAGACACGTCTTTTTGCAAGCTGCATAGACAATGTCATCTATCAGTTTGATTGTGTCAGTCTAAAGCCAAAGCCAGTCGCCTGTTACCGGGGACATGTCAATTCAACGTTCTATGTGAAGACCTCCCTGAGTCCCGATGACCGCTACCTCCTCAGTGGCTCCTCTGACGGCAACGCCTACATCTGgcctgttgaccttcctgtcaCTTCACCACTGGCCTTGAAAGGTCACACAGGTGAAGTGTCAGGGGTCGCATGGTGCCCGGCCGATTTCACCAAGTTGGTGACTCTTGGCGATGACAACTCGATGTGCTTCTGGCGTTTGACGCGGAGGGCGGGGTTGTTACCCAAGCTGCCCGAGCTGATCGGTTGGACAGAGAGAACTCACCACGAGATAGGTATTTCTGTGAAGTCACCTCCCTCTGCTATATCTGCATATCTAAAGTCACCCGTGAAAGGGACGACACTGCCCCAAAGTCCCGCAAAAGTGTCGCCGGCGGTTCGGAGGAATCTTGTTGCAATGACAACCACGACGGTTCGCAGCAGTCTGATTTCACCGTCACTCTCGAAGTGGGTGTCGGCAGCCTCTAGCAAAACTGGTTGGTCGCCACGAAAACTGCAAGTGACACCAAAGAAATGCACAGTGGCAAACACACCGAGTCACATGACACAGTCATCAGAGGAGCAGGTTATGAAAGAGCGGGTAAAACGGAAACTTTGTGATGATGtcatcaccagcagcatcaccGTGGAAAATGGACGACTTACACCAAACAAGAGACACAAATGTTCTGATGAAAGTGCAAGGAATACTACCTTGTCTGTTCGCAGCAGCCGCAACAAAGATAGCCAACCCATAGTGACACCATTAAAGAGCGATGCCCAATCGTGTGTGAGGTCACGTGAGGGGTCATTTGCGGCTCACGATGACTCGGCTCGAAAGGCGTTATTCCCCTTGTCCGACGGATCGCATGATGTGGGTCTGGCGTCCAGACTCCTACAGCCTCTATCGTCCCCACAGAGTCCGTCAACATCGGGGGCACTGCTCCCACGTTTTTGTGGGACCAATCACCAGTCACCCACACAGGGGTTACCTAACTATGTACTGAACCCCGAGCCTCGAACCCCGGTGGGGAAACTGCCACCAAAGTTGAACAAAACTCCAACTTGGCTGACAAGGCTAGCCTGTGATAAGTCATCCCCTGGTCAAACAAATCATAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051865	Family	WD repeat-containing CDT2 adapter protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22852	LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007095	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-