Gene detail

Detailed information of ENSZWYP00000000286.1 in Lamellibrachia columna Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSZWYP00000000286.1	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	chr10	48346031	48363677	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSZWYT00000000286

TTTATTAAATCGTTTTCTGGATGTAGGCTTactttgtgtttatttttacaAACATGAAAACGGTAACTTTAAGTTAATTGAAACTATGTATATCAGATTTAATGAAGTAGATATCATTCACAGTATGTAATTATTCTTAACTCGAAGCGTTTATTCAGCCTTCTGGACGAGGCAGAATGAATGTGACCGAACCCGATGTGCTGACAGAGGTTCCTGAGACGCTGAAGCGAATCGTGCGCTACATTACACGTGGCTTTTATGACATTGAAGCGGCTCTTATTATCGACCTCCTCATTCACCACCCCTGCATCAAGGAGGACGATCTCATCGATTTGCTCAAGTTTGAACGCAAGCAGCTCCGCCAGGCAATGACGATTCTGAAGAACGATAAATTCATCAATGTGCGGATGCGAGCGGAGACAGACGCCGAGGGGAAGATGACTCGTCACAACTACTACTTCATCAACTACAGTGTTCTCGTGAACGTCGTTAAGTTCAAGCTTGATCACATGCGCAAGAAGATCGAGATGGAGGAACGTGATTCGACAAGTCGTGCATCCTTCCTGTGCCCACGCTGCGAGAAGACGTTCACTGATCTAGAGGCAGACCAGCTATTTGACTTCACCACGCTGATGTTCCGCTGCACGTATTGCCAGGAGGAAGTGAAAGAGGAGACCATTAGTCTACCAAAGACTGATGCGCGCACACTCATGGTCAAATTTAACGAGCAGctccagcctatattctccctACTGCTTGAAGTTGAGGACATCAAATTGTCAGCAGAGATCCTGAACCCTGAACCTGTAGATCTGTCAAGCAAAACCAGGTCCTACGGCAGCAAACATCCATCTGACAGAGGTACGTGGAGTGGTGAGGCGAGTCGGAACCGCGGCTATGGATTCACAGAGAACGAGGTGACCATCAACATCCACGGAGACAATGAGACCGTGGAGACTAAGCAAAAACCTCAGAAGGAACGCCCGGTGTGGTTGACAGAGAGTACCCTGGAGGCAGCTGCTGCCAGTGCAACCGTTCTACAACAGACCGACACATTTGTTGCGCCAAAGACGACCACGCAGCCAATACCTCAGCCAGCAACGAAGTCAGTTGAGAATGATGATATCATGAAGACATTGCTTGCCCATGAAAAGACAGCAACGACATCGCATGTGCCTATGGGAGTCACAGTGGCTCCACCCAGTGATGAGGACAGCTCAACCAGCGAGTCAGATGATGAGACAATGGTTACGAATAAGCCGGCCGTCACCGTCATCGGGGGAGCTGTTGAGGAGATGGAGAGTGAGGAGGAAGCAGTTCCCATGGTTACAGTGGGAGGAGAGCATGTGCCATATGACGAGGTGACGGAGGAGATGGTTGGAAGAATGACTTCGGCTGAAAAGGAAGAGTATATCCGACTGGGACAACAGATGTACGAGGATATGTTCAGCTGAGAAACAACACCCAAGATTGGGAGGAATATAGATCTTTGGGAGTGGACAGGTTCCCTTTGGGTGTTTGGAGGCTACTGGTCAGTCGTGACTGGGACACGGGCAGACTCGATGTCGCTGTGTGACCAGACGTAGAACCCAACATGCACGCTCCTTCATTTCCCTTCATGCCTTGGGAGGCACCTAAGGCTTCCGTGAGAGGGCGTCACTGTTGCAGCCTACTTGGTGATGGCGTCCCATGTCAGACTGCGCTGTTATCCGTTGCCACAATTGTTCTTCACGTTTCCTGAGGGGCACCCCGTCTCCTACCACCTGCTGCCTAGTGTagggctgtcttgggcagtgtgCCAGGGGACATACATTACGTGTGCCCTAGCCATCACCCCCTCTTGCCGTACAAACCAAGTACTGTATTTGATCTAATAAGCAAATAGTGCActtaaaaaatgtcaaggaatctgatCTTATAGGCGTACACctaatttttttctctagacaataaggtaactgtttaacactagtggtgtcatttggtgactaacGAAAGTGGTGCCAaatgtttaacaccagatggcgacactcagtttttccacactagtcaaattacaataattatggatcctggtgattaaaaaagggtgtaggctaattagggcatgtacacttaataggtcgaatactgTTTCTAATTGGAGGCAACATCGTGTGCAGCCATGAAGAATGGACGCGTTACAGTAGTATGACATCACGATGGAAGAACTGCTTGTGTAATGAAAGCATGTAAAGCCTTCTTCATATGGATAAGACCCTGCTGTTAATATTCCCAGATAAAAACACGTAATGTAAGAGTTGTTTCAAGCATTTGCAACATGGGGAAATTCTGGAAATGGAACAGCTTGCATTTCAGGTTATGTAATTGAAGTGTCATCCATAAAGTGAACTGGAACAGAAGTAGAGGAATTAAAATAAAGTAACTgatttgcaagaattataacTACACAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02002	TFIIE_alpha	TFIIE alpha subunit	Family	Interproscan
PF11521	TFIIE-A_C	C-terminal general transcription factor TFIIE alpha	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002853	Domain	Transcription initiation factor IIE subunit alpha, N-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017919	Domain	Transcription factor TFE/TFIIEalpha HTH domain	Interproscan
IPR021600	Domain	Transcription factor TFIIE alpha subunit, C-terminal	Interproscan
IPR024550	Domain	TFIIEalpha/SarR/Rpc3 HTH domain	Interproscan
IPR039997	Family	Transcription factor E	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13097	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001113	Biological Process	transcription open complex formation at RNA polymerase II promoter	Interproscan
GO:0005673	Cellular Component	transcription factor TFIIE complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-