Gene detail

Detailed information of ENSTGOP00000018364.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000018364.1	NUCLEOPORIN	chr3	74997451	75002151	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSTGOT00000021202.1

ATGTTCGCCAGCACCCCGATGTCAGGAACAGCTAGCGTGTTCGGTGCCGCAAGCCCCGCTATATCCGCGACCGGAACTCAAACTAAATACGACCCGGTGAACGACATCGAAACCGTCAAGAAGGGCGTCAACGAGACCAAGATCACGATGAAGCACATGAGCATCAGCGCCATGAACGTTTACAGCGGCAAGTCTGTCGAGCAACTGCGGATAGAGGATTACGTGGACAACCGAAAGGGGCCTCAACAGTCCACCTCGACGAGTCTGTTCGGCGCTACGGCCCAGCCTACGAATGCTTTCAGTTTTAAACCGACGGCTACCGTAGGTTTCAAAGAATCGCCCTCGATCTTCGGCAACAGCGCCCCAGCCCCCGCCACCACCTCCCTGTTCGGTACGGCCGCACCTAAACCCGCGTTTGGTTTCGGAGCCGCTGCAGCCACCACTACCTCTGCCACTAGTTTGTTTGGTACCGCCACCCCCACCAAGAGTATGTTCGGTAAGCCGGCCGTCAGTGCTGCGCCCGGGGGCCTATTCGGAGGCGTGAGTACCGCTGCCCCCGCTTTCGGTACCACCACCTCCACTAGTAACCTGTTTGGAGCCCCCGCCGCCACCACCTCCACCTCGAATCTCTTCGGAGCCACTGCCAGCGCCGGAATGTTCGGAGCCGCTAAACCTGCCACGTCAACATTCTCGTTTGGAACCCCCGCCCAGCCCAGTGCTGCCACCCCACCCCTATTCGGGGCAACTAAACCCGCTACCACAGGACTGTTCGGTCAAACCACTCCGGCCATTCAGACCCCTGCTGTCGTTGGGGGGCTCTTTGGTACAACCCCCACTACGGGGCTGTTTGGCACTAAACCAATGGTCGCCGCAGTCCCCACTGCCGGCGGTATATTCGGAGCTAAAGCCCCCGCCACCACGTTTGGTTTCGGATCAGTTGCCCCCATCGCGACGCCCCTCGTTGCTGCCACCGTTACTACCGCAGCCCCAGAGTCAAACTTATACGGCCAGCTGCTGGGCATGAACAACTCTCCCTATGGTGACTCACCCCTGTTCTGCAACCTCGTCCCAGATGAGAAGAAGAAGGAAGAGATGCTGAAACCAACGAATCCAGCAGTTCAACGTGAGATTATCTCTAATGCCGAGAACTTGTATAGTTCCGTGTCTCACATTCAAATTAGGCCCAAGAGGATCTCAACCATGCTCAGCTCCACTAAGTCTCAGGTGTTCAATGGCCTAGATGATGATGACGCCTCATTCGCTAATCCCCGTCACCTAACACAAAGACACACCCCCCGTCGCAGTAACTCTCAGTGTATATTACGGCTGAAACCGCAAGACTTTAACCGCACGAACACGTCCGACCTTCTGGTGACCTCTGTGAACAGTTCGCACACGTCGATTGTGTACACCCAGCCGCGCCCCTTCACCCCCGGCGAGGCGAGGGTAACACCCTCACGTCGCAGTCTCCTCACCCCCAAACAACAACACCTTCAGCCCAGGAATCTGAACTCTGAACTCAACCGCTCGGAGAATCAAACACGACTAAAAGACTTTGATAGCACCATTGACGAGATGATCACCTCGACCTACAACAGTGGGGTTAAACCCGCCACCTCCGCCCCCAAGATTACCCCCATGTCCTGCGAGAGTCTTCCCGCTAATAATATCTACACCAGCCCCGTTAAAGAACCCCAGGCCCCTAATCTAGACCCCGATCTACTGCCCGATGATATCATGGAGCCTATCCAGGAGATAATAGGAAGTAGATGTGGAGTGGTGCTAACTAGGTCAGGGTACTACACTATGCCCAGTGTAGAAGAGATGGACACCCTGGTCAACGAACAAGGGCGCTGTCTAGTGGAGAACTTTGTGGTGGGGTGCGAGGGTTTCGGTAACGTGCTTTTCTACGGGGAGACAGATGTCACCGATATGAACCTCGATGAAATAGTGTTCTTCAGAAGTAAAGAGGTAACAGTCTACCCTAACGTGCTTCTGGAACCCGCCGTAGGGTTGGGTCTCAACAAGTTCTCGCAGGTCACTCTAGATGGGGTCTACCCCAAGGACATGAAGAACCAAGACAAGCTCATCACTTGCCCCGCCGAACTGTCTGACATGAAGTTTGAGGTGAAACTGAAGAAAGCGTGCAAGAAGAACGGAAGCGCCTTTAAAGATTACCTTACCGATACCGGATCGTGGATATTCAACGTGGAACATTTCACTAGATACGGATACGACAGCGATGACAGCGACGACGAAGACGATGAGACATACGGACAGAAACAATTAGAGAAAGATAACGGACTTGTTCTGGAATCTGTGCCTAAGATGAAATCGCTAACGGACGACGCCTCGTTCAAGGTCACCGCCGGCTCGCTAACGACCCCTATGGAAGGTCAAACTGCACCAGCGGGTGGCGATGACTACGACGACCTTGATGAGATGAATATCAACAGTAGTAACAACATGGGGGGTGCTGCCTCCTCCGGTACTACTACTGGGGGTGGTGGGGCTGGGGGTGGAGCTAACACTACCAACACTACCGCCTCCTCGGAATACTACGGCAACGACTCCGACATGTACGAGTCTGTGTCCAACTACACGGAGAGTCTGTTCAGTGTAGAAAGTGAAGACACAATGTACACCCAAAGTCAACAGCAACCTCCACCCGTCAAGATGAACCAGTACGCCACGCAGGGTAACATGTACCAGCTACAGATGCAGCGTATACTGTTTGATGACGAGGCTGGTGATTCAGACAATGAGTTCGCAATAGGGGGCGCCGGTGGTGATGTTGGAATGGCCAGTTATCAGCGTAAACAGCACTCAATAGCCGCCCCGCCCCCCCATTTCACGCCTCAACTCGCCACCAGGGGAATGTTTGATTACATCAACGCGCCGAATCGCAGCTATCAGATGATCTCCGACGAAACAAACCAATCGTTTGACAAGGACGCGGACTCCGACCTTGACGATCACGACCTCTACGTCGACGCGACCTCTAAAGCGAAGGTGTTCTGTCACGACGACAACAACCCTTCCACCATCCGCCTGCACTTCTCCATGGAGGCTGTACATCGCGAGGCACCCACGCCCCGCCCCCTTCCTAGCGCCCAGCTTATCTCCGCCCACAAGCTGCCTGTCGACGCAATCGATACCAACGTCGCCATCAGTCAATATCTGACGGACACGCGACCTTCCAGTAACGTTTACCTAGGGGACGAAGTGTTCAGACACAGTCTACGAGGTCCTCTGCTCACTCTCATCCACTCGGGGGAGCCACTAGTACAACGATCAACGCAGGCTACGGCCAGCGATAAGATGAAACTGTTTATGTACGGACAACAAGCCAGGAAACCCACCGGACCTCATTCTGTCAACGTAGAGGATGTGCTGCCCGTGGGACTGCCTCGCTATACGCAGGAAGATATCGAGAGCATCGAGGAATGTCTGAACATCCGCATGAAGTACACCGTCGCAAACCTCGTCTACGAGATGATCGAAGACTACTCGTCTACAGAAGCTGACAGCGACGAACTTGACGACATCGACACCGACGACCTCGACACCGACATGCGACACGCCAACGACCTTCGCTCTACCGCCGCGACCCCCGCCCCACCGATGGAGCAAGGCTGCGACGATAACGATGACACCATCCCCTCTGTGTACGTACTGAAGAACACCACCAGCCACCTGAACCCGGTCGAGTCTAACGAAGCTATTCACGAACTGTCTGCCTACTTCGTAGAACTATGCCAGCGACAAGACATGAGCGACATGGCCTACTACAGTAAACAAGTGTGGAACCTGTTTGTGGCGTTGTGGGGTAACATCAACCATCATCTCATCGGACTAGTTAACACCGAGATAACGAGCCACGAGTACCAACAAGGAAGAATAGCGGCAGTGGAACAGTGGTTCTCTGAAACAATAGACTCTCACGTCGAAGATCAGCTCCTCGAAATGAAGGAGGGTTCCATAAAACGGGTGTTCCTAGAAATAGCCGCCAAGCGCTGGAAGGACGCTCGTAACAGCGCCCTTAAGTCTAACCACCTGATGATACTGCGACTTCTCGTGTCCTCCATGGATAGCCGTAAGCTCGGCTGTAGGAAACAGCTCGAGAATTGGCTGAACGGAGATATAGGTGAATACATCTCCGTCGACATAAAGAAGGTATACTCTCTGTTGGCAGGTATAATGAGCGTAGCACACAAAGACACTAACTTTAACATCAACGTTTGTGAAGATCTACACTGGATTCACGCGCTAGCAATTCACATGGGATTCAGAACGGGAGTAGTATCACTGAAAGATTCCGTTCAAGTCTACACCCAGGCATTCCAAGGCCCTTCCGCCATCGCTAACCCCCCACAGCCCCACTACAAAGCCTCCACCGAACCCTATGACCCTGAAACCAGTGACCTCTGCTACCACCTACTTCGTCTGTCTGTGGATAAGTCCTACAACCTCGATCTCATATTGGCTAATCGTTCTTACACGGATTGTTCACTGGATTATCATCTCGGATGGCATGTGAATCAAGCCCTATACGGTCTCGGCTACCTCTCCATGGACACTGACACTAGAAACAAGCTTCACTGCTGCTACGCCTCACAACTCGAGACCATGAAACTGTGGAAGTGGTCCGTGTTTGTGTTGCTCCATCTCAACCATCGCTACCTTCGTGACCATCATATCAAGCAAGTGATCAACCGTAACATGACCTTGAACCACAAGAATGAGGCTTCAACGGACGAGTTCCTGTTGACTAAACTACACATCCCGTCGGTGTGGATCTACGAAGCTAAGGCATTGAGAGCTAAAAGTGAAGCGAAGGTAGAGCTACAATGTAGATACCTCCTTAAAGCTGAACACTACAACGACGGACATCAGCTATTCCTCGACAGTATCGTCCCTAGAGCTGACCTCCAGACAAGAGAATCCTGCGTAGAACTGTTTGAGATATTGGATCTGTTGTACGCCCACAGAGAGGACATCAATACGTGGACGGAAGGGGCGCAAGTCTACTACGACTACTTTAGAATTGCGGACGTACGCATTGAATCACTCGACGACCTTCAAGAAATCCACCAAAATGCAGTGAATATCTATAAAAATATACAATTTTTGAAACAATACACAGATAATCACAGTTTGAATCTTTATCTGATGAGAAACAATCTTGAAGATATTATTTACAAAACTAAAGCTGTTACAAAGAATTAA

Transcript

ENSTGOT00000021202

CCACCCCGGCATTCGGCTCCTCTTCCACGCCCACTTTCGGGGCCTCCTCGACCCCGGTATTCGGCCAATCGTCTACCCCCAACGTGTTCGGAGCCGCCAATGCGTTCGCCCCCGCTAAACCAGCTACGTCGTCATTTTCATTCGGAGCCTCTCCCGCCCCCCAGGCCACCACCAGTCTGTTCGGTGTCCAGCCCACCGCAGGCAGCAGTATGTTCGCCAGCACCCCGATGTCAGGAACAGCTAGCGTGTTCGGTGCCGCAAGCCCCGCTATATCCGCGACCGGAACTCAAACTAAATACGACCCGGTGAACGACATCGAAACCGTCAAGAAGGGCGTCAACGAGACCAAGATCACGATGAAGCACATGAGCATCAGCGCCATGAACGTTTACAGCGGCAAGTCTGTCGAGCAACTGCGGATAGAGGATTACGTGGACAACCGAAAGGGGCCTCAACAGTCCACCTCGACGAGTCTGTTCGGCGCTACGGCCCAGCCTACGAATGCTTTCAGTTTTAAACCGACGGCTACCGTAGGTTTCAAAGAATCGCCCTCGATCTTCGGCAACAGCGCCCCAGCCCCCGCCACCACCTCCCTGTTCGGTACGGCCGCACCTAAACCCGCGTTTGGTTTCGGAGCCGCTGCAGCCACCACTACCTCTGCCACTAGTTTGTTTGGTACCGCCACCCCCACCAAGAGTATGTTCGGTAAGCCGGCCGTCAGTGCTGCGCCCGGGGGCCTATTCGGAGGCGTGAGTACCGCTGCCCCCGCTTTCGGTACCACCACCTCCACTAGTAACCTGTTTGGAGCCCCCGCCGCCACCACCTCCACCTCGAATCTCTTCGGAGCCACTGCCAGCGCCGGAATGTTCGGAGCCGCTAAACCTGCCACGTCAACATTCTCGTTTGGAACCCCCGCCCAGCCCAGTGCTGCCACCCCACCCCTATTCGGGGCAACTAAACCCGCTACCACAGGACTGTTCGGTCAAACCACTCCGGCCATTCAGACCCCTGCTGTCGTTGGGGGGCTCTTTGGTACAACCCCCACTACGGGGCTGTTTGGCACTAAACCAATGGTCGCCGCAGTCCCCACTGCCGGCGGTATATTCGGAGCTAAAGCCCCCGCCACCACGTTTGGTTTCGGATCAGTTGCCCCCATCGCGACGCCCCTCGTTGCTGCCACCGTTACTACCGCAGCCCCAGAGTCAAACTTATACGGCCAGCTGCTGGGCATGAACAACTCTCCCTATGGTGACTCACCCCTGTTCTGCAACCTCGTCCCAGATGAGAAGAAGAAGGAAGAGATGCTGAAACCAACGAATCCAGCAGTTCAACGTGAGATTATCTCTAATGCCGAGAACTTGTATAGTTCCGTGTCTCACATTCAAATTAGGCCCAAGAGGATCTCAACCATGCTCAGCTCCACTAAGTCTCAGGTGTTCAATGGCCTAGATGATGATGACGCCTCATTCGCTAATCCCCGTCACCTAACACAAAGACACACCCCCCGTCGCAGTAACTCTCAGTGTATATTACGGCTGAAACCGCAAGACTTTAACCGCACGAACACGTCCGACCTTCTGGTGACCTCTGTGAACAGTTCGCACACGTCGATTGTGTACACCCAGCCGCGCCCCTTCACCCCCGGCGAGGCGAGGGTAACACCCTCACGTCGCAGTCTCCTCACCCCCAAACAACAACACCTTCAGCCCAGGAATCTGAACTCTGAACTCAACCGCTCGGAGAATCAAACACGACTAAAAGACTTTGATAGCACCATTGACGAGATGATCACCTCGACCTACAACAGTGGGGTTAAACCCGCCACCTCCGCCCCCAAGATTACCCCCATGTCCTGCGAGAGTCTTCCCGCTAATAATATCTACACCAGCCCCGTTAAAGAACCCCAGGCCCCTAATCTAGACCCCGATCTACTGCCCGATGATATCATGGAGCCTATCCAGGAGATAATAGGAAGTAGATGTGGAGTGGTGCTAACTAGGTCAGGGTACTACACTATGCCCAGTGTAGAAGAGATGGACACCCTGGTCAACGAACAAGGGCGCTGTCTAGTGGAGAACTTTGTGGTGGGGTGCGAGGGTTTCGGTAACGTGCTTTTCTACGGGGAGACAGATGTCACCGATATGAACCTCGATGAAATAGTGTTCTTCAGAAGTAAAGAGGTAACAGTCTACCCTAACGTGCTTCTGGAACCCGCCGTAGGGTTGGGTCTCAACAAGTTCTCGCAGGTCACTCTAGATGGGGTCTACCCCAAGGACATGAAGAACCAAGACAAGCTCATCACTTGCCCCGCCGAACTGTCTGACATGAAGTTTGAGGTGAAACTGAAGAAAGCGTGCAAGAAGAACGGAAGCGCCTTTAAAGATTACCTTACCGATACCGGATCGTGGATATTCAACGTGGAACATTTCACTAGATACGGATACGACAGCGATGACAGCGACGACGAAGACGATGAGACATACGGACAGAAACAATTAGAGAAAGATAACGGACTTGTTCTGGAATCTGTGCCTAAGATGAAATCGCTAACGGACGACGCCTCGTTCAAGGTCACCGCCGGCTCGCTAACGACCCCTATGGAAGGTCAAACTGCACCAGCGGGTGGCGATGACTACGACGACCTTGATGAGATGAATATCAACAGTAGTAACAACATGGGGGGTGCTGCCTCCTCCGGTACTACTACTGGGGGTGGTGGGGCTGGGGGTGGAGCTAACACTACCAACACTACCGCCTCCTCGGAATACTACGGCAACGACTCCGACATGTACGAGTCTGTGTCCAACTACACGGAGAGTCTGTTCAGTGTAGAAAGTGAAGACACAATGTACACCCAAAGTCAACAGCAACCTCCACCCGTCAAGATGAACCAGTACGCCACGCAGGGTAACATGTACCAGCTACAGATGCAGCGTATACTGTTTGATGACGAGGCTGGTGATTCAGACAATGAGTTCGCAATAGGGGGCGCCGGTggtgatgTTGGAATGGCCAGTTATCAGCGTAAACAGCACTCAATAGCCGCCCCGCCCCCCCATTTCACGCCTCAACTCGCCACCAGGGGAATGTTTGATTACATCAACGCGCCGAATCGCAGCTATCAGATGATCTCCGACGAAACAAACCAATCGTTTGACAAGGACGCGGACTCCGACCTTGACGATCACGACCTCTACGTCGACGCGACCTCTAAAGCGAAGGTGTTCTGTCACGACGACAACAACCCTTCCACCATCCGCCTGCACTTCTCCATGGAGGCTGTACATCGCGAGGCACCCACGCCCCGCCCCCTTCCTAGCGCCCAGCTTATCTCCGCCCACAAGCTGCCTGTCGACGCAATCGATACCAACGTCGCCATCAGTCAATATCTGACGGACACGCGACCTTCCAGTAACGTTTACCTAGGGGACGAAGTGTTCAGACACAGTCTACGAGGTCCTCTGCTCACTCTCATCCACTCGGGGGAGCCACTAGTACAACGATCAACGCAGGCTACGGCCAGCGATAAGATGAAACTGTTTATGTACGGACAACAAGCCAGGAAACCCACCGGACCTCATTCTGTCAACGTAGAGGATGTGCTGCCCGTGGGACTGCCTCGCTATACGCAGGAAGATATCGAGAGCATCGAGGAATGTCTGAACATCCGCATGAAGTACACCGTCGCAAACCTCGTCTACGAGATGATCGAAGACTACTCGTCTACAGAAGCTGACAGCGACGAACTTGACGACATCGACACCGACGACCTCGACACCGACATGCGACACGCCAACGACCTTCGCTCTACCGCCGCGACCCCCGCCCCACCGATGGAGCAAGGCTGCGACGATAACGATGACACCATCCCCTCTGTGTACGTACTGAAGAACACCACCAGCCACCTGAACCCGGTCGAGTCTAACGAAGCTATTCACGAACTGTCTGCCTACTTCGTAGAACTATGCCAGCGACAAGACATGAGCGACATGGCCTACTACAGTAAACAAGTGTGGAACCTGTTTGTGGCGTTGTGGGGTAACATCAACCATCATCTCATCGGACTAGTTAACACCGAGATAACGAGCCACGAGTACCAACAAGGAAGAATAGCGGCAGTGGAACAGTGGTTCTCTGAAACAATAGACTCTCACGTCGAAGATCAGCTCCTCGAAATGAAGGAGGGTTCCATAAAACGGGTGTTCCTAGAAATAGCCGCCAAGCGCTGGAAGGACGCTCGTAACAGCGCCCTTAAGTCTAACCACCTGATGATACTGCGACTTCTCGTGTCCTCCATGGATAGCCGTAAGCTCGGCTGTAGGAAACAGCTCGAGAATTGGCTGAACGGAGATATAGGTGAATACATCTCCGTCGACATAAAGAAGGTATACTCTCTGTTGGCAGGTATAATGAGCGTAGCACACAAAGACACTAACTTTAACATCAACGTTTGTGAAGATCTACACTGGATTCACGCGCTAGCAATTCACATGGGATTCAGAACGGGAGTAGTATCACTGAAAGATTCCGTTCAAGTCTACACCCAGGCATTCCAAGGCCCTTCCGCCATCGCTAACCCCCCACAGCCCCACTACAAAGCCTCCACCGAACCCTATGACCCTGAAACCAGTGACCTCTGCTACCACCTACTTCGTCTGTCTGTGGATAAGTCCTACAACCTCGATCTCATATTGGCTAATCGTTCTTACACGGATTGTTCACTGGATTATCATCTCGGATGGCATGTGAATCAAGCCCTATACGGTCTCGGCTACCTCTCCATGGACACTGACACTAGAAACAAGCTTCACTGCTGCTACGCCTCACAACTCGAGACCATGAAACTGTGGAAGTGGTCCGTGTTTGTGTTGCTCCATCTCAACCATCGCTAcctTCGTGACCATCATATCAAGCAAGTGATCAACCGTAACATGACCTTGAACCACAAGAATGAGGCTTCAACGGACGAGTTCCTGTTGACTAAACTACACATCCCGTCGGTGTGGATCTACGAAGCTAAGGCATTGAGAGCTAAAAGTGAAGCGAAGGTAGAGCTACAATGTAGATACCTCCTTAAAGCTGAACACTACAACGACGGACATCAGCTATTCCTCGACAGTATCGTCCCTAGAGCTGACCTCCAGACAAGAGAATCCTGCGTAGAACTGTTTGAGATATTGGATCTGTTGTACGCCCACAGAGAGGACATCAATACGTGGACGGAAGGGGCGCAAGTCTACTACGACTACTTTAGAATTGCGGACGTACGCATTGAATCACTCGACGACCTTCAAGAAATCCACCAAAATGCAGTgaatatctataaaaatatacaatttttgaaacAATACACAGATAATCACAGTTTGAATCTTTATCTGATGAGAAACAATCTTGaagatattatttacaaaactaAAGCTGTTACAAagaattaatattcaataaag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04096	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF12110	Nup96	Nuclear protein 96	Domain	Interproscan
PF13634	Nucleoporin_FG	Nucleoporin FG repeat region	Family	Interproscan
PF21240	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR021967	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan
IPR025574	Repeat	Nucleoporin FG repeat	Interproscan
IPR036903	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-