Gene detail

Detailed information of ENSTGOP00000016783.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000016783.1	HOMEOBOX PROTEIN EMX-RELATED	chr3	68210671	68227764	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSTGOT00000019312

GAAATAGCCGACCCGTTCTACGCCCACTGTAAACAGCACGTCGACCAGAGATCTAAACTCCAGAAGATCACTAACTACCGGAAGCTGTGCTCGAACATCTCCGTGTCCAGGTGCATTCTACCCAAGCCCCCGTCGAGAAGCACCCCCGTCACTTGAACACGTCGTCGCACGCCGTAAGACATCTGCATCGTAAGGCTGAGTTCTTCAAAGATGACATCAAACTAGAGTCAGCTTACGAGGCGATGAAGAAGAGGAGTCAGATCAAGGACATTACAGCTGTCGCGTTCAGCGCTGACTTTGTCCATTACTATAAAGAAAGAGAAAgcaatttctctcacctgctAGATGACCTTGAACAATTAAAGGAACAGAACCGTATTCTTAACGATGAACTGAAGAACACAATGCGAATCTATGTAGACAGCTTGAATGGAAGAAACAGCTCGGAAACTAAGATTATTGGCATAGCTAACCAATTTTTGGATTTGTGGAACGCTTTGAAATCTGCCACTAGTAAGGATATCAAGACACCCGATTGGATGGACAAATTAACTACACCGATAGTGAGAGAGGAACGTTTCCTGGTGCATACTTGCGAGCAATGCAGTTCAGTGGACAAACAATACGCGATGGCCCAGTGCGATAACTGCAGACTCCGCTATCACATCGCTTGTCTAGATCCGCCCCTCGCCAAGTTGCCGCTTAAAACTAAACACATCGgatgGGAGTGTAACATTTGTACTCAGGCACAATCGGATGAAGATCACGATAAGGATATCAAGGAATCTCATGGAACGCCAACTGAATCAAAGATATCCAATCTGTGTTGCGTTTGCTCGAAACCTGTCTCTGAATTCAATCTGAAGAAATGCTTTGAATGTAAACTCAACTATCACGTGGAATGTATTCCTGACGATCTGAAACCCAAGAACAGAAGAGCTAAGTGGCTGTGTTTTAACTGTTTACAACAGATTACAACACCAGTGattaaaaaaaaagatataaCTACTAAAGCAAGAAAATCAACACCcaGCAAAAAATACAAGAATAAGATGTACTTTAACCCGGATTCGAAGCGCTTAAGATCTCACTTTACGCCGGATCAGATTGAAGGCCTGAACAACGCCTTCGATGCGAATATTTTCCTGACCGGACAATCGCGTAAGAATGTGGCGGCCACCTTACATCTCTCCAACACACAAGTCAAGATATGGTTTCAGAACAAGCGCGTCGGTCTCAGGAAGCAAAACGGTGGCTCGAACACTACGGACAGTAGCCACGGCGACCAGCCGGACCAAGGTCATTACACCGGCGTCAAGGTCATCATACCGGCCATCTTACCGCCCGACCCCACCAGCACGATATGCCTCGACGATGAGGTGATAATCCAGCCTCGCGTCGTGCCCCCCGCAGAGATGCTACTGACTGACCTTCAGATTGACCTTCACACTGACCTTCATATAGAGAATCCCGTGGACGACGACTTCTTTGAGTCTAAAAAGAGAAAAAGAGGAGGAACCGGAAGAAGAGGTTTCAGAACAAAGGGACATAAGAAAAGAAGAGGAGATGACGAAGAAGACGATGAAGAAAAGAATGCTGACGACAAGAGTGATAACAATGACAGTAACAGTGAGAACAATGTTGACAATAGTAGTGCAAATAGTAGTGCGAATAGTAGTGACAATAATGGAGATAACGAGAATGTTAGTGACCATGATACTGAGACAGCCAGCGATGATAATAGAGATGTGGTAGAGGATGAGCCGGACGGGCAAGATGTTAACGAAGCTGATGGAGGCGTTGAAGATGATGAAAAGAGAGGAGGGGAATATGAAGTAGATGATGATTATGAGGTGGACGATGCAGAAGATAGCGACGACTTGCTGAGCCAAAGCGAAAACGATTAGattacattatgtaatcatattatttatatcatttttttaagtaacatattttcttattttataataaaagtaaaaattttaatctaaaaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR050877	Family	EMX/VAX/Noto Homeobox Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24339	HOMEOBOX PROTEIN EMX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-