Gene detail

Detailed information of ENSTGOP00000012671.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000012671.1	SNF2/RAD54 HELICASE FAMILY	chr2	84430413	84437215	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSTGOT00000014624.1

ATGAGCGACCACGAAGTCGACAAAAACCAGGTACCCGACGTGGTGGCAGAGGTTCCGGAAGGAGAAGATGAAACAGCTTCTTCTACGGCTACTGGTGTTGCTGCGTCGGTGACTGCTGAGCAGGAAGTAGATAATGCGGTCGATGCTAATGCAGAAGTAACTGCGGCTACGGAGGACAATACTGGAAGCAGTAAGTCGGCCGACGAAGAGAAAAGTTCAGAGGTCACCAACAGCGAGATCACCTCCGAGGTGGAGGTGTCCAGCGAAGCTGGCAGCACTACCGATAACTTTATGAGTAAAATCGAAAAAGATCGCGGTAACAGATTTCAGTTTCTGTTGAGTCAGACGGAGTTGTTCTCCCATTTCTTGACCTCGGGTGATTTAGGTTCAAAGGTCACCAACAAGAAGGCGATAACCAGTCCTCATCGGGGTCGTCAAAAGACCAAGAAAGATGAGAAATCTAAACTCTTGGAACAGGCAGAAAAGAACAACGATCACAGACATAGACGTACGGAGAAGGAAGAAGATGAAGAGATGTTGACCACGTCTAACAAGACTGACAACCGCTACACCTTCAACTCTAACCCCGCATTCGTTACAGGAGGGGAGATGAGAGATTATCAAATCAGAGGTCTCAACTGGATGATATCATTGTACGAGAACGGAATCAACGGTATTCTTGCTGATGAGATGGGTTTAGGTAAGACCCTGCAGACGATCTCCTTACTCGGCTACATGAAGAACCACTTGAACATCGCGTCGCCCCATCTCATCATCGTACCCAAGTCCACCCTGTCCAATTGGATGGACGAGTTTCAGCGGTGGGTTCCCTCCATAGATGCCATCTGCCTTATCGGCGATGCCAAGACTAGGACTGAATTCATCCGAGACACTGTACTGTTGAACAAGTGGGATGTGTTGGTCACCTCGTTTGAGATGGTGATCTGCGAGAAGCAGCTGATCAAGAAGTACAACTGGCGTTACATCATCATCGACGAAGCGCACAGAATCAAGAATGAGAAGTCAAAGCTGTCTGAGATAGTGAGAACATTCCGCTCCGCTAACAGACTACTTCTGACCGGTACCCCGCTACAGAACAATCTTCACGAACTGTGGGCTCTATTGAACTTCCTGCTACCAGATGTGTTCAATTCATCCGACGATTTTGATGAATGGTTCAGCACTAACAAATGCTTCGGAGATAATGAACTAGTAACCAGACTGCACGCTGTGTTGCGTCCCTTCTTACTGAGAAGAATAAAGAGTGAAGTGGAGAAGAGACTTCTTCCCAAGAAAGAACTCAAGATATACGTTGGACTCAGTAAGATGCAAAGAGAGTGGTACACAAAGATTCTCATGAAGGACATAGACATTCTGAATTCAGCCGGACGTTCAGATAAGCTTCGCCTCCTCAACATTCTCATGCAGCTCCGCAAGTGCTCCAATCATCCCTATCTGTTTGACGGGGCCGAACAAGGTCCCCCTTACACCACTGATCAACACATCGTCGATAACTCGGGAAAGATGGCGCTACTTGATAAACTATTGCCTCGTCTCAAAGCACAAGACTCTAGGGTGCTGATATTCAGTCAGATGACTCGTGTCCTTGACATATTGGAGGATTACTGTTCATGGAAGGGCTATGAGTATTGTCGTCTCGATGGTTCTACCCCCCATGAAGATAGGCAGAAAGCTATCAAAGATTACAATGCTCCAAACTCCTCAAAGTTTATCTTCATGTTAAGTACCAGAGCTGGAGGTCTGGGTATCAATCTGGCTTCGGCTGACATCGTTATCCTGTACGACTCGGACTGGAACCCTCAAGTAGATCTACAGGCAATGGACCGAGCTCACAGAATCGGACAGAAGAAGCAGGTGAAGGTGTTCCGTCTGATCACTGAGAACACTGTAGAGGATCGCATCGTGGAGAGGGCCGAAATGAAGCTGAAACTCGACAATGTGGTCATTCAACAAGGTCGTCTAACGGATGCCGCTAAGAAGCTCGGTAAAGATGAAGTGCTGTCTATGATTCGGCACGGAGCTAATCATGTGTTCTCTGCCAAAGACAGTACCATCACTGATGACGATATCGATGAAATATTGTTAAGGGGAGAAAAGAAGACTGAGGAGATGAAAGCTAAGATGGATACCCTCGGTGAATCCAGCCTTAAGAACTTCACTATGGACATTGAAGGACCCACGGATACTGATAACTACACACTGTTTCTGTTTGAAGGTCAAGACTATAAAGCTAAACAGAAGGGAATGAAATGGATTGAACCTCCTAAACGTGAACGTAAGGCTAACTACGCAGTGGATTCCTACTTTAGGGATGCGTTCCGTGCACCCGAACCCAAGGTTGTCCGAGCTCCACGACCTCCGAAACAACCCAATATTCAAGATTTCCAGTTCTTCCCCACCAAGTTGTTCACTATCCTCGAACAAGAGATCTACAGTTATCGCAAGAACCTTGGATATAAGGTTCCGTTTGACCCCGATCTAGGCGAAGACGCAGAGCGTAAGTGTAAAGAGGAGCAGAACAAGATTGACAACGCTGATGACCTTACAGAGGACATGGTGGCGGAGAAGGAAGATCTCTTGACCCAGGGTTTCCTATCTTGGAACAAGAGAGATTTCAATCAATTCATTAAGGCTAATGATAAGTTTGGCAGAGAAGATATAAATAATATCGCTAATGAAGTTGATGGAAAGAAACCATCTGAGGTTTTGGAGTATGCGAAGGTGTTCTGGGAGAGGTGTCGTGAGCTTCAAGACATTGACAAGATCATGTTGCAGATTGAACGAGGGGAGGCTAAAATCATCAGGAAATCTCTCGTGAAAGTCATCCTAGATAAAAAGATTCAAAGATACAAAGCTCCATTCCATCAACTACGTCTTCAGTATGGTACGAACAAGGGTAAGAACTACACTGAAGACGAGGACAGATTCCTGATCTGCATGCTACACCACCTGGGCATGGACAGGGAGAATGTCTACGATGAACTACGGTGTACGCTGCGTAACTGTTCTCAGTTCCGTTTCGACTGGTTCATTAAGTCTCGCACCGCTCTGGAATTGTCCAGACGCTGCAACACATTAATTAATCTGATAGAGAGGGAGCACACTGAGATGGAAGAGAAGGAGAAGGCTGATTTAGCGAAGATGAAGAAGATCAAAGAACACAGTAGGAAACGTAAGAATGATGCAAGTGGCCATTCTTCCAAGAAGAGGTGTTAA

Transcript

ENSTGOT00000014624

ATAAAATGAGCGACCACGAAGTCGACAAAAACCAGGTACCCGACGTGGTGGCAGAGGTTCCGGAAGGAGAAGATGAAACAGCTTCTTCTACGGCTACTGGTGTTGCTGCGTCGGTGACTGCTGAGCAGGAAGTAGATAATGCGGTCGATGCTAATGCAGAAGTAACTGCGGCTACGGAGGACAATACTGGAAGCAGTAAGTCGGCCGACGAAGAGAAAAGTTCAGAGGTCACCAACAGCGAGATCACCTCCGAGGTGGAGGTGTCCAGCGAAGCTGGCAGCACTACCGATAACTTTATGAGTAAAATCGAAAAAGATCGCGGTAACAGATTTCAGTTTCTGTTGAGTCAGACGGAGTTGTTCTCCCATTTCTTGACCTCGGGTGATTTAGGTTCAAAGGTCACCAACAAGAAGGCGATAACCAGTCCTCATCGGGGTCGTCAAAAGACCAAGAAAGATGAGAAATCTAAACTCTTGGAACAGGCAGAAAAGAACAACGATCACAGACATAGACGTACGGAGAAGGAAGAAGATGAAGAGATGTTGACCACGTCTAACAAGACTGACAACCGCTACACCTTCAACTCTAACCCCGCATTCGTTACAGGAGGGGAGATGAGAGATTATCAAATCAGAGGTCTCAACTGGATGATATCATTGTACGAGAACGGAATCAACGGTATTCTTGCTGATGAGATGGGTTTAGGTAAGACCCTGCAGACGATCTCCTTACTCGGCTACATGAAGAACCACTTGAACATCGCGTCGCCCCATCTCATCATCGTACCCAAGTCCACCCTGTCCAATTGGATGGACGAGTTTCAGCGGTGGGTTCCCTCCATAGATGCCATCTGCCTTATCGGCGATGCCAAGACTAGGACTGAATTCATCCGAGACACTGTACTGTTGAACAAGTGGGATGTGTTGGTCACCTCGTTTGAGATGGTGATCTGCGAGAAGCAGCTGATCAAGAAGTACAACTGGCGTTACATCATCATCGACGAAGCGCACAGAATCAAGAATGAGAAGTCAAAGCTGTCTGAGATAGTGAGAACATTCCGCTCCGCTAACAGACTACTTCTGACCGGTACCCCGCTACAGAACAATCTTCACGAACTGTGGGCTCTATTGAACTTCCTGCTACCAGATGTGTTCAATTCATCCGACGATTTTGATGAATGGTTCAGCACTAACAAATGCTTCGGAGATAATGAACTAGTAACCAGACTGCACGCTGTGTTGCGTCCCTTCTTACTGAGAAGAATAAAGAGTGAAGTGGAGAAGAGACTTCTTCCCAAGAAAGAACTCAAGATATACGTTGGACTCAGTAAGATGCAAAGAGAGTGGTACACAAAGATTCTCATGAAGGACATAGACATTCTGAATTCAGCCGGACGTTCAGATAAGCTTCGCCTCCTCAACATTCTCATGCAGCTCCGCAAGTGCTCCAATCATCCCTATCTGTTTGACGGGGCCGAACAAGGTCCCCCTTACACCACTGATCAACACATCGTCGATAACTCGGGAAAGATGGCGCTACTTGATAAACTATTGCCTCGTCTCAAAGCACAAGACTCTAGGGTGCTGATATTCAGTCAGATGACTCGTGTCCTTGACATATTGGAGGATTACTGTTCATGGAAGGGCTATGAGTATTGTCGTCTCGATGGTTCTACCCCCCATGAAGATAGGCAGAAAGCTATCAAAGATTACAATGCTCCAAACTCCTCAAAGTTTATCTTCATGTTAAGTACCAGAGCTGGAGGTCTGGGTATCAATCTGGCTTCGGCTGACATCGTTATCCTGTACGACTCGGACTGGAACCCTCAAGTAGATCTACAGGCAATGGACCGAGCTCACAGAATCGGACAGAAGAAGCAGGTGAAGGTGTTCCGTCTGATCACTGAGAACACTGTAGAGGATCGCATCGTGGAGAGGGCCGAAATGAAGCTGAAACTCGACAATGTGGTCATTCAACAAGGTCGTCTAACGGATGCCGCTAAGAAGCTCGGTAAAGATGAAGTGCTGTCTATGATTCGGCACGGAGCTAATCATGTGTTCTCTGCCAAAGACAGTACCATCACTGATGACGATATCGATGAAATATTGTTAAGGGGAGAAAAGaagACTGAGGAGATGAAAGCTAAGATGGATACCCTCGGTGAATCCAGCCTTAAGAACTTCACTATGGACATTGAAGGACCCACGGATACTGATAACTACACACTGTTTCTGTTTGAAGGTCAAGACTATAAAGCTAAACAGAAGGGAATGAAATGGATTGAACCTCCTAAACGTGAACGTAAGGCTAACTACGCAGTGGATTCCTACTTTAGGGATGCGTTCCGTGCACCCGAACCCAAGGTTGTCCGAGCTCCACGACCTCCGAAACAACCCAATATTCAAGATTTCCAGTTCTTCCCCACCAAGTTGTTCACTATCCTCGAACAAGAGATCTACAGTTATCGCAAGAACCTTGGATATAAGGTTCCGTTTGACCCCGATCTAGGCGAAGACGCAGAGCGTAAGTGTAAAGAGGAGCAGAACAAGATTGACAACGCTGATGACCTTACAGAGGACATGGTGGCGGAGAAGGAAGATCTCTTGACCCAGGGTTTCCTATCTTGGAACAAGAGAGATTTCAATCAATTCATTAAGGCTAATGATAAGTTTGGCAgagaagatataaataatatcgctAATGAAGTTGATGGAAAGAAACCATCTGAGGTTTTGGAGTATGCGAAGGTGTTCTGGGAGAGGTGTCGTGAGCTTCAAGACATTGACAAGATCATGTTGCAGATTGAACGAGGGGAGGCTAAAATCATCAGGAAATCTCTCGTGAAAGTCATCCTAGATAAAAAGATTCAAAGATACAAAGCTCCATTCCATCAACTACGTCTTCAGTATGGTACGAACAAGGGTAAGAACTACACTGAAGACGAGGACAGATTCCTGATCTGCATGCTACACCACCTGGGCATGGACAGGGAGAATGTCTACGATGAACTACGGTGTACGCTGCGTAACTGTTCTCAGTTCCGTTTCGACTGGTTCATTAAGTCTCGCACCGCTctgGAATTGTCCAGACGCTGCAACACATTAATTAATCTGATAGAGAGGGAGCACACTGAGATGGAAGAGAAGGAGAAGGCTGATTTAGCGAAGATGAAGAAGATCAAAGAACACAGTAGGaAACGTAAGAATGATGCAAGTGGCCATTCTTCCAAGAAGAGGTGTTAACTGATTcgacattaattataattaatttctttaattttgtattgaataaatatttatttttatcttgaTTGCCTTAGAAAATAaacaagtta

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF09110	HAND	HAND	Domain	Interproscan
PF09111	SLIDE	SLIDE	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR015194	Domain	ISWI, HAND domain	Interproscan
IPR015195	Domain	SLIDE domain	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036306	Homologous_superfamily	ISWI, HAND domain superfamily	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044754	Domain	Isw1/2, N-terminal	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-