Gene detail

Detailed information of ENSTGOP00000000653.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000000653.1	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	chr1	99678479	99692901	+

Gene Structure

More details in Jbrowse Sequence

CDS

ENSTGOT00000000730.1

ATGAAACTAATATTATATATACTACTATTATACTGCATACATATCGATTCAGATACACAAAGTGGATGCGATAAAAAGACAAAGTTTCAATGTGATAACGGAACATGCATCTCTAGAGAGTGGGTCTGTGACGGTGTTGTCGAGTGTGATGATGATGGCTCCGATGAACTGAACTGTGAAAACTACACCTGCCCTGATATGTTCCAATGTATCAAGGGAGGTAGTTGTATATTCAACAAAATGAGATGCGACCACAACTATGACTGTGCTAACAAGGCTGATGAGATAGGCTGTCAATATGCAGACAGTAAGTCGTGTAACGCGGATCAATTCTACTGCGACGGGGGTTGTATCGTCAATGATTGGAGGTGTGACGGGGACATTGACTGCGATGATAAGACCGATGAACTCGACTGTCCTTGCAACAGTTTGACCCACTTCAACTGCACTGACATGTTGTCCTGTATCAATAAGGACAGACTCTGCGATCATACTAAGGACTGTGCTGATGGCAGCGATGAAAAAGACTGCGAAGATAAGTATACAAACGAGGGCAAGCCGTGTATGAAGGACCACTTCAAGTGTGGCATCACTAACAAATGCATGCACAACAAGTACAGATGTGATGGGGCAGAGGACTGCGATGATGGCTCAGACGAAGCGTTATGCATGCATACCACCTGCGCTAATGGAACCTTCATGTGTCACACACCCCTAAGACACAACTCCACCCACATCACCGAACAGTGCATAGTTAACAGTGCACGATGTAATGGTATTGATGATTGTAATGATGGTTCTGATGAACTGGAGGCTGATGGAAATGAATGCAAACATTACTCTAACCAATGCACTAGCGCTGAGTTTGATTGCCGTGACGATGGTACTGAATGCGTCCCTAAGAGCGACGTGTGCGATCAGAAGAACGACTGCACCGGAGGGGAAGACGAGGCTACGGATATCTGTTCTCAAGACAACACCACCTGTCACCTGCACAATGGAGGATGTGAACAGCTGTGTACGTTTGACTACGAACAGAGGTGTGCCTGTTACCCCGGCTTCAAGCTCGACATCGATGACGTCAAGTGTGTGGATATAAACGAATGTGAAATCAAAGGAATGTGCAGTCAGAAGTGTGAGAATGTTCCGGAACGTAACTACACTTGTAGCTGCTTCGAGAACTATCATTCTAATATCACTAATGCTCACCTGTGTGTTGCTGATGGAGAGAAAGCCTCGCTGCTATTCGCCCACAAAACAGACATCCGCCTCTATCAACCTGAAACCAGACTATACACAATGGTGGCTAACAAAACAATCAACGCTATAGCCATTGACTACGATTATGATGAAGGCTTCATGTACTGGACTAGTATGCGCATGTCCATAATCTATCGACAACCTATCTTCAACTCGTCAAACGATAAACGAGAGATTGTGTTAAGCTCCGGTATCGACTTGTCCGATGGAATAGCTTTTGATTGGATACACAAGAATCTTTACTGGACTGATACGGGACTCAATAAAATAGGTATGATGTCCATTAAAGCGAACCCGGAACGCAATCACAAGATACTGTTCAACTACGACCTCGATGAACCCCGCTCTATCATCGTTGATCCACGCGAAGATCAAGGGTGGTTCTACTGGACCGACTGGGGTAAAACCCCCTCCATAGAGAAGGCAGGACTGGATGGGAGCATGAGGAGGATGATCTTCTCCGGTCAAGAGATTGAGTGGGCGAACGGACTCACTATAGATTACACCACTAACCACCTGTACTGGTGCGACGCTAAACTGAACTCTATACGGAGGATAGACCTCGACGGTAGCAACGTGAAGCTTATCCTGCATTCCTACCATCTGTTGAGACACCCCTTCTCCATTACCGTGTTCCAGGACTCCCTCTACTGGACTGATTGGAACAGCGACTCCATCAACTCGGCTAGTAAATTCAACGGAACGAATGCCTACAGAGTTCACAAAGTTAGCTCTCCGATGGGTATCGTAGTCCACCACAGGAACCGTCAACCCCAAGCTAAGAACCGTTGCTCCGCCGACATAAACGGGGGCTGTTCTGACATCTGTACGCCCCGCCCCGATGCCGGGGGTAACGCCTTCACTTGTCTGTGTACGTCGGGTCGTGAACTGGGCGTCGACTTTAAGACCTGCAATCAAGTCGTTCACCACACCACCATAGCTAACGACCCCCACGGAGACAAGTCTAAACACTCGAAGTACAGAGGCTTCATCATCTTTATGACCATCGTGCTGGTGCTCTGCAGTTTCCTGTTAATCGGGATGGTTGCCAAGAAGATGCACCTGCGCATGCGGGGTAAACCTCTCAACTTTGAGAACACAATCTACAGGAAGACAACCAATCAAATCAGCATCGACACCTCCAACGAATACTTCCATTCGACCAATGACAGAATACCTTTGACTTCAGAACCGATATTCGCCCAGACTGACACCGTTTCCTATGCAGATACTTAG

Transcript

ENSTGOT00000000730

GTGTATGTCCGAAAATATTAcgcaaatattttatatatcatttttaatatttaattcatacgCTTTCAATCTTATATCATAatgaaactaatattatatatactactattatactgCATACATATCGATTCAGATACACAAAGTGGATGCGATAAAAAGACAAAGTTTCAATGTGATAACGGAACATGCATCTCTAGAGAGTGGGTCTGTGACGGTGTTGTCGAGTGTGATGATGATGGCTCCGATGAACTGAACTGTGAAAACTACACCTGCCCTGATATGTTCCAATGTATCAAGGGAGGTAGTTGTATATTCAACAAAATGAGATGCGACCACAACTATGACTGTGCTAACAAGGCTGATGAGATAGGCTGTCAATATGCAGACAGTAAGTCGTGTAACGCGGATCAATTCTACTGCGACGGGGGTTGTATCGTCAATGATTGGAGGTGTGACGGGGACATTGACTGCGATGATAAGACCGATGAACTCGACTGTCCTTGCAACAGTTTGACCCACTTCAACTGCACTGACATGTTGTCCTGTATCAATAAGGACAGACTCTGCGATCATACTAAGGACTGTGCTGATGGCAGCGATGAAAAAGACTGCGAAGATAAGTATACAAACGAGGGCAAGCCGTGTATGAAGGACCACTTCAAGTGTGGCATCACTAACAAATGCATGCACAACAAGTACAGATGTGATGGGGCAGAGGACTGCGATGATGGCTCAGACGAAGCGTTATGCATGCATACCACCTGCGCTAATGGAACCTTCATGTGTCACACACCCCTAAGACACAACTCCACCCACATCACCGAACAGTGCATAGTTAACAGTGCACGATGTAATGGTATTGATGATTGTAATGATGGTTCTGATGAACTGGAGGCTGATGGAAATGAATGCAAACaTTACTCTAACCAATGCACTAGCGCTGAGTTTGATTGCCGTGACGATGGTACTGAATGCGTCCCTAAGAGCGACGTGTGCGATCAGAAGAACGACTGCACCGGAGGGGAAGACGAGGCTACGGATATCTGTTCTCAAGACAACACCACCTGTCACCTGCACAATGGAGGATGTGAACAGCTGTGTACGTTTGACTACGAACAGAGGTGTGCCTGTTACCCCGGCTTCAAGCTCGACATCGATGACGTCAAGTGTGTGGATATAAACGAATGTGAAATCAAAGGAATGTGCAGTCAGAAGTGTGAGAATGTTCCGGAACGTAACTACACTTGTAGCTGCTTCGAGAACTATCATTCTAATATCACTAATGCTCACCTGTGTGTTGCTGATGGAGAGAAAGCCTCGCTGCTATTCGCCCACAAAACAGACATCCGCCTCTATCAACCTGAAACCAGACTATACACAATGGTGGCTAACAAAACAATCAACGCTATAGCCATTGACTACGATTATGATGAAGGCTTCATGTACTGGACTAGTATGCGCATGTCCATAATCTATCGACAACCTATCTTCAACTCGTCAAACGATAAACGAGAGATTGTGTTAAGCTCCGGTATCGACTTGTCCGATGGAATAGCTTTTGATTGGATACACAAGAATCTTTACTGGACTGATACGGGACTCAATAAAATAGGTATGATGTCCATTAAAGCGAACCCGGAACGCAATCACAAGATACTGTTCAACTACGACCTCGATGAACCCCGCTCTATCATCGTTGATCCACGCGAAGATCAAGGGTGGTTCTACTGGACCGACTGGGGTAAAACCCCCTCCATAGAGAAGGCAGGACTGGATGGGAGCATGAGGAGGATGATCTTCTCCGGTCAAGAGATTGAGTGGGCGAACGGACTCACTATAGATTACACCACTAACCACCTGTACTGGTGCGACGCTAAACTGAACTCTATACGGAGGATAGACCTCGACGGTAGCAACGTGAAGCTTATCCTGCATTCCTACCATCTGTTGAGACACCCCTTCTCCATTACCGTGTTCCAGGACTCCCTCTACTGGACTGATTGGAACAGCGACTCCATCAACTCGGCTAGTAAATTCAACGGAACGAATGCCTACAGAGTTCACAAAGTTAGCTCTCCGATGGGTATCGTAGTCCACCACAGGAACCGTCAACCCCAAGCTAAGAACCGTTGCTCCGCCGACATAAACGGGGGCTGTTCTGACATCTGTACGCCCCGCCCCGATGCCGGGGGTAACGCCTTCACTTGTCTGTGTACGTCGGGTCGTGAACTGGGCGTCGACTTTAAGACCTGCAATCAAGTCGTTCACCACACCACCATAGCTAACGACCCCCACGGAGACAAGTCTAAACACTCGAAGTACAGAGGCTTCATCATCTTTATGACCATCGTGCTGGTGCTCTGCAGTTTCCTGTTAATCGGGATGGTTGCCAAGAAGATGCACCTGCGCATGCGGGGTAAACCTCTCAACTTTGAGAACACAATCTACAGGAAGACAACCAATCAAATCAGCATCGACACCTCCAACGAATACTTCCATTCGACCAATGACAGAATACCTTTGactTCAGAACCGATATTCGCCCAGACTGACACCGTTTCCTATGCAGATACTTAGTAATAACTCTCAACtattttatgcgattttatctTTTTTTATTCTACGAATTTTATCGTAAGTAATTTTTACTTACCGACAATTTTACCTtttctgatataattattatgtaattgtatCGTTTATGATAGCATCACACGCCGCGGGTCTCTTACACTGACACATAATACCATGTTTCACATATCAACTTgtacctatctatctatctacatatacatatatacatacattacccCCATCTCCCCTAATCCCAATCCTCTATCGTTTATATCGTGCTAAGAACGCATCGGACCTATTATTGTATTACGGGTGTGTTTTTAGTATTTATTTGTACGACGAACTCGACGATGAACTACTactatgttgtatatatataactacgatgtatatatacacgcacATTTATCACGACGTACACACGCGCTCGCATTCATACACACGTACGTACATAGTCAATAAGAGTGTGAGTTTGTAGCACGGACAGTTGGACCACTTGACCACCTGACCACTTGAACACCCGCTACACTAGTATCAcacaagagagagagagagagagagctgtCCGCCTCGCATCACTCGAACTCCTGCAGTATACGCTGTCTCTCTTGAGCAACGAACTTTGCGATGATCACCATGGGTTTGTGTCGTACGATCTTCAGTTGTTTGCTCATCGAGGACTTGAATTCCTCGTTTGCGTCCTTCACTGAACCTCGAGTCACCGATCTCTTTCTGTGAATAATGCGTGAGACGTGGAGTGTGTGTGCTGCGATGCGATGCGCGGACAAACGCGGCAGCGACGCAACAGCAACGGCAGCGAAAACAGctatttttatagaataaaaacTATGAAATAAATCAATCTGTGTATTCATTTCGTATAAATTAGTCTCGTATATATGATACATGTGTAGTCAGGAGTATAAGATTTAATTTGGAAAATAAAGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-