| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| ENSTGOP00000000644.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | chr1 | 49695481 | 49723449 | + |
| CDS | |||||
| ENSTGOT00000000721.1 | |||||
| Transcript |
| ENSTGOT00000000721 |
| Protein |
| ENSTGOP00000000644.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00570 | HRDC | HRDC domain | Domain | Interproscan |
| PF01612 | DNA_pol_A_exo1 | 3'-5' exonuclease | Domain | Interproscan |
| PF08066 | PMC2NT | PMC2NT (NUC016) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002121 | Domain | HRDC domain | Interproscan |
| IPR002562 | Domain | 3'-5' exonuclease domain | Interproscan |
| IPR010997 | Homologous_superfamily | HRDC-like superfamily | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR012588 | Domain | Exosome-associated factor Rrp6, N-terminal | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR044876 | Homologous_superfamily | HRDC domain superfamily | Interproscan |
| IPR045092 | Family | Exosome complex exonuclease Rrp6-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12124 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000166 | Molecular Function | nucleotide binding | Interproscan |
| GO:0000175 | Molecular Function | 3'-5'-RNA exonuclease activity | Interproscan |
| GO:0000176 | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000467 | Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003727 | Molecular Function | single-stranded RNA binding | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity | Interproscan |
| GO:0044237 | Biological Process | obsolete cellular metabolic process | Interproscan |
| GO:0071035 | Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | Interproscan |
| GO:0071036 | Biological Process | nuclear polyadenylation-dependent snoRNA catabolic process | Interproscan |
| GO:0071037 | Biological Process | nuclear polyadenylation-dependent snRNA catabolic process | Interproscan |
| GO:0071038 | Biological Process | TRAMP-dependent tRNA surveillance pathway | Interproscan |
| GO:0071039 | Biological Process | nuclear polyadenylation-dependent CUT catabolic process | Interproscan |
| GO:0071040 | Biological Process | nuclear polyadenylation-dependent antisense transcript catabolic process | Interproscan |
| GO:0071044 | Biological Process | histone mRNA catabolic process | Interproscan |
| GO:0071051 | Biological Process | poly(A)-dependent snoRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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