Gene detail

Detailed information of ENSTGOP00000000264.1 in Osedax fenrisi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSTGOP00000000264.1	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	chr1	122572120	122573934	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSTGOT00000000307.1

ATGGGTAGAAAGCGAATTGATAAGGAAACACCTACCCGTAGACGAAAAGAAAAGAAACAACGAGATCCAGTATTTAAAACACCCAATAAAGAAAAGGCAATAGATAAAGATGGAAAAAGAAAATTAAATCCAAAATGTATAAAAAGAATGGCGAAGCGAGAACAAAAGAAAATCGATCTGATCTTGGAAAGGAAAGAGGCCAAGAAAAATCCAAAGGTCGAAAAGGTCGTTGAAACACCCAGGGAGGACAGCGATGATATGTACACTAGTGGTTCAAGTGAAGAGGAAGAAAAAGTCATTAATAAAGAATACACTGATGACAATGCTCAATGGCTGAAACCATCCAAAAGGAAAGCTAGTAAGGTAGAGGAAGAGGAGGAGGAGGAGGAAGAAGATGATGTCGAAGAAAATGGAGTTGATTCAGATGATTCTCTGATGGGGGATGATTTTGGTGAAGCCAGTTCAGATGAGGAGGAGGAGGAGGATGACAATGGGGATGATGATATGAATGCAGATGAAGATGATGAGGATGATGATGGTAGTGATGGAAGTGACAGCGACGGTGATGACAGCGATGACCATTTGATGCTACCTATTGAGAAAGAAGCTAAGAGATTACGCAAAAAAGAAAAGAAAGTCATGAAGATGGCCGCCGAAGAGCTGCAGACGAACATCCTGTCCACCGAGATCTACACACTGCCCAGCGGTCAAGAGATCGAATTGGAGAAGTGTAAGGCGCCCGACCTCATCGCTATACAACAGAGAGTCAAGGACGTTATGTCGGTACTCGCAGACTTCAAGTCTCGCAGGAAGGACGGAACAACACGCAAGGAATACCAGCACAGATTGGTGCTGGACTTGTGCCAGTATTACGACTACAATGAATTCCTCATGGAGAAGTTTCTGGAACTATTCCCTCAACAGATTGTGGAGTTCCTAGAGGCTAACGAAGTGAAGAGACCCGTTACTATTAGAACTAATACCCTGAAGACCAGACGAAGAGATCTCGCTCAGACTTTAATTAATCGCGGAGTGAACTTGGATCCCATCGGAAAGTGGTCCAAAGTAGGACTCGTGATCTATGATTCTCAAGTCCCCATAGGTGCTACCCCTGAATACCTCGCTGGACATTACATGATACAGGGAGGTTGTTCTCTACTGCCCACGATGGCATTGGCTCCTCAGGAAAACGAGCGTATTCTCGATATGGCTTCGGCGCCCGGAGGAAAAACTAGTTACATCGCCCAGCTAATGAAGAACACGGGTACCCTGATAGCCAACGACGCCAGCAAAGCTCGAGTGGCGGCCGTAGTGGGTAACCTTCATCGTCTGGGGGTCACCAACTCGGTGGTGTGCTGTATGGACGGAAGGAAACTGCCCGCCGTCCTGCACGACTTCGACAGGGTGTTGTTGGACGCCCCGTGTTCCGGTACAGGGGTCATCGCTAAGGACCCCAGCGTTAAGACTAATAAGGATCTTCGAGACATCCTTCGCTGTTCCCATCTTCAGAAGGAACTGTTGTTGGCCGCCATCGACTGCTGTACCGCTAAATCCAAGTCTGGAGGTTATGTCGTCTACTCGACGTGTTCTGTCCTCGTCGAAGAGAACGAGAACGTCGTCAACTACGCTCTCACCAAGCGCAACGTTAAACTCGTGTCCACTGGGCTTGACTTTGGAACTGATGGATTCACTCACATGAAAGACCACCACTTCCACCCGAGTATGAAGTTAACCAAGCGCTTCTACCCTCACACTAACAATCTGGACGGTTTCTTCGTGGCCAAGTTCAAGAAACTGAGCAACAAAATACCAGATGCCGGTAAAGTTAAATCCACAGATTCGGTGAACGATATCTTGAAACGTGAAGCCGCACGACGTACAAAAGAAGAACAAGAGCAAGAGTCTGACGCCGACAGTTCAGCCGATGAGGAAGAAGAAGAGAGCTCAGAGGAAGAAGAAGAGGAGGAGATGAGTGTCGGGGAGGAGGAAGAGGAGAGTTCTGATGAGGAGGAGGAGGAGTCGGATGATGAGGATATCAGCATGGTCGTAAACAGTAGCGAGATCATAGTAGAAGATGATTCAGACGATGACGACGACCTAGATTTAGATCTAGAGCATAGCGACATCGGAGAGGATATCGAAGACGATCAAGAAGATGACTTCGATTTGGACGGCAGTTCCGACGATGGAGGTTCTTCTCTCGCAGACTCTGACGAAGAAGGAGGTGACGGAGGCGGACTTGAGTCATTCTCTGATTCAGAGGACGAGTCTGATGATGATGATGAACCCCCCGCAAAGGTAATGAAATCATTATCTTCGATTAAGAAAGGTATCAGTAAAACTTTGAAGAATACACCAGCAAAGAAGGTTAAAGTTGTCAGCCCTGTAAAGAAAGTTGTCTCCCCTGTAAAGAAAGTTGTCTCCCCTGTAAAGAAAGTTGTCTCTCCTGTAAAGAAGGTTGACACCCCTGCAAAGAAGGTGAAAGTTGACACCCCTGTAAAGAAGGTGAAAGTTGACACCCCTGTAAAGAAAGTGAAAGTAGACACCCCTGCAAAGAAGGTGAAAGTTGACACTCCAGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAAGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACACCAGTAAAGAAGGTGAAAGTTGACACTCCAGTAAAGAAAGTGAAAGTTGATACTCCAGTAAAGAAGATGAAAGTTGACACTCCCGTAAAGAAGGTTAAAGTTGACACTCCGGTAAAGAAAGTGAATAATGCTGGTGATCTATCGACACCTAAAAAATCGGCTATGAAACTAAAAAATAATACACCAATTTCAAAGAAAAGCGAAAATCAAATGTCAACTCCCCAAAGCAAGAAGTTTGTGACGCCCAAGCATTTAGACACGCCTAGACCGACCGCCTCCGGTAAAGCTTCCTCGATACTGGAAACACCCGACACCGTTGTCACCAGTCTTAAGCTGTCGTCTACCGTTAAGAAGTCGGCCGGCAAGGTCGGTAAAACGCCCTTGAACGATAGAGTGAAATCTCTGACGCAAGACCTTCAAACTCCGTTGACCAGTCGAAAGTCGTTGAAGATTGCCGTCGAGAAGGGTGATTTGAAAACCCCGAAAGCTAAAGCCCCCCGAGCTAACGGTACACCCGTTAAGGCGAGTAACGGTAACGTACAGAGTTCATCGGTGGAGAAGAAGTTATTCAAGACCCCGACTAATCAGAGTACTAAAACGAAACCTGCAAAAACCGAAGAGAAATCCAAAAAATCAACGTCTAAGAAGAGGAAATTATCTATGTAA

Transcript

ENSTGOT00000000307

cgttaagttaatatatttgaaaataaaaatgggTAGAAAGCGAATTGATAAGGAAACACCTACCCGTAGACGAAAAGAAAAGAAACAACGAGATCCAGTATTTAAAACACCCAATAAAGAAAAGGCAATAGATAAAGATGGAAAAAGAAAATTAAATCCAAAATGTATAAAAAGAATGGCGAAGCGAGAACAAAAGAAAATCGATCTGATCTTGGAAAGGAAAGAGGCCAAGAAAAATCCAAAGGTCGAAAAGGTCGTTGAAACACCCAGGGAGGACAGCGATGATATGTACACTAGTGGTTCAAgTGAAGAGGAAGAAAAAGTCATTAATAAAGAATACACTGATGACAATGCTCAATGGCTGAAACCATCCAAAAGGAAAGCTAGTAAGGtagaggaagaggaggaggaggaggaagaagaTGATGTCGAAGAAAATGGAGTTGATTCAGATGATTCTCTGATGGGGGATGATTTTGGTGAAGCCAGTtcagatgaggaggaggaggaggatgacaATGGGGATGATGATATGAATGCAGATGAAGATGATGAGGatgatgatggtagtgatggAAGTGACAGCGACGGTGATGACAGCGATGACCATTTGATGCTACCTATTGAGAAAGAAGCTAAGAGATTACGCAAAAAAGAAAAGAAAGTCATGAAGATGGCCGCCGAAGAGCTGCAGACGAACATCCTGTCCACCGAGATCTACACACTGCCCAGCGGTCAAGAGATCGAATTGGAGAAGTGTAAGGCGCCCGACCTCATCGCTATACAACAGAGAGTCAAGGACGTTATGTCGGTACTCGCAGACTTCAAGTCTCGCAGGAAGGACGGAACaaCACGCAAGGAATACCAGCACAGATTGGTGCTGGACTTGTGCCAGTATTACGACTACAATGAATTCCTCATGGAGAAGTTTCTGGAACTATTCCCTCAACAGATTGTGGAGTTCCTAGAGGCTAACGAAGTGAAGAGACCCGTTACTATTAGAACTAATACCCTGAAGACCAGACGAAGAGATCTCGCTCAGACTTTAATTAATCGCGGAGTGAACTTGGATCCCATCGGAAAGTGGTCCAAAGTAGGACTCGTGATCTATGATTCTCAAGTCCCCATAGGTGCTACCCCTGAATACCTCGCTGGACATTACATGATACAGGGAGGTTGTTCTCTACTGCCCACGATGGCATTGGCTCCTCAGGAAAACGAGCGTATTCTCGATATGGCTTCGGCGCCCGGAGGAAAAACTAGTTACATCGCCCAGCTAATGAAGAACACGGGTACCCTGATAGCCAACGACGCCAGCAAAGCTCGAGTGGCGGCCGTAGTGGGTAACCTTCATCGTCTGGGGGTCACCAACTCGGTGGTGTGCTGTATGGACGGAAGGAAACTGCCCGCCGTCCTGCACGACTTCGACAGGGTGTTGTTGGACGCCCCGTGTTCCGGTACAGGGGTCATCGCTAAGGACCCCAGCGTTAAGACTAATAAGGATCTTCGAGACATCCTTCGCTGTTCCCATCTTCAGAAGGAACTGTTGTTGGCCGCCATCGACTGCTGTACCGCTAAATCCAAGTCTGGAGGTTATGTCGTCTACTCGACGTGTTCTGTCCTCGTCGAAGAGAACGAGAACGTCGTCAACTACGCTCTCACCAAGCGCAACGTTAAACTCGTGTCCACTGGGCTTGACTTTGGAACTGATGGATTCACTCACATGAAAGACCACCACTTCCACCCGAGTATGAAGTTAACCAAGCGCTTCTACCCTCACACTAACAATCTGGACGGTTTCTTCGTGGCCAAGTTCAAGAAACTGAGCAACAAAATACCAGATGCCGGTAAAGTTAAATCCACAGATTCGGTGAACGATATCTTGAAACGTGAAGCCGCACGACGTACAAAAGAAGAACAAGAGCAAGAGTCTGACGCCGACAGTTCAGCCGATGAGGAAGAAGAAGAGAGCTCAGAGGAAGAAGAAGAGGAGGAGATGAGTGTCggggaggaggaagaggagagttctgatgaggaggaggaggagtcgGATGATGAGGATATCAGCATGGTCGTAAACAGTAGCGAGATCATAGTAGAAGATGATTCAGACGATGACGACGACCTAGATTTAGATCTAGAGCATAGCGACATCGGAGAGGATATCGAAGACGATCAAGAAGATGACTTCGATTTGGACGGCAGTTCCGACGATGGAGGTTCTTCTCTCGCAGACTCTGACGAAGAAGGAGGTGACGGAGGCGGACTTGAGTCATTCTCTGATTCAGAGGACGAgtctgatgatgatgatgaaccCCCCGCAAAGGTAATGAAATCATTATCTTCGATTAAGAAAGGTATCAGTAAAACTTTGAAGAATACACCAGCAAAGAAGGTTAAAGTTGTCAGCCCTGTAAAGAAAGTTGTCTCCCCTGTAAAGAAAGTTGTCTCCCCTGTAAAGAAAGTTGTCTCTCCTGTAAAGAAGGTTGACACCCCTGCAAAGAAGGTGAAAGTTGACACCCCTGTAAAGAAGGTGAAAGTTGACACCCCTGTAAAGAAAGTGAAAGTAGACACCCCTGCAAAGAAGGTGAAAGTTGACACTCCAGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACTCCCGTAAAGAAAGTGAAAGTTGACACTCCCGTAAAGAAGGTGAAAGTTGACACACCAGTAAAGAAGGTGAAAGTTGACACTCCAGTAAAGAAAGTGAAAGTTGATACTCCAGTAAAGAAGATGAAAGTTGACACTCCCGTAAAGAAGGTTAAAGTTGACACTCCGGTAAAGAAAGTGAATAATGCTGGTGATCTATCGACACCTAAAAAATCGGCTATgaaactaaaaaataatacacCAATTTCAAAGAAAAGCGAAAATCAAATGTCAACTCCCCAAAGCAAGAAGTTTGTGACGCCCAAGCATTTAGACACGCCTAGACCGACCGCCTCCGGTAAAGCTTCCTCGATACTGGAAACACCCGACACCGTTGTCACCAGTCTTAAGCTGTCGTCTACCGTTAAGAAGTCGGCCGGCAAGGTCGGTAAAACGCCCTTGAACGATAGAGTGAAATCTCTGACGCAAGACCTTCAAACTCCGTTGACCAGTCGAAAGTCGTTGAAGATTGCCGTCGAGAAGGGTGATTTGAAAACCCCGAAAGCTAAAGCCCCCCGAGCTAACGGTACACCCGTTAAGGCGAGTAACGGTAACGTACAGAGTTCATCGGTGGAGAAGAAGTTATTCAAGACCCCGACTAATCAGAGTACTAAAACGAAACCTGCAAAAACCGAAGAGAAATCCAAAAAATCAACGTCTAAGAAGAGGAAATTATCTATGTAATCTTATAGAGATAATTTTGTACattgtaagtaatattattatacattattcggTTCATTTTTCAAATAGATATTTTGTCAAtacatttcaatttatttaa

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF17125	Methyltr_RsmF_N	N-terminal domain of 16S rRNA methyltransferase RsmF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001678	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR011023	Domain	Nop2p	Interproscan
IPR018314	Conserved_site	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	Interproscan
IPR023267	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR023273	Family	RNA (C5-cytosine) methyltransferase, NOP2	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR031341	Domain	Ribosomal RNA small subunit methyltransferase F, N-terminal	Interproscan
IPR049560	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000470	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0001510	Biological Process	RNA methylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008757	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0009383	Molecular Function	rRNA (cytosine-C5-)-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-