Gene detail

Detailed information of ENSQHTP00000033949.1 in Bathymodiolus brooksi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSQHTP00000033949.1	TRANSLATION INITIATION FACTOR IF-2-RELATED	CAVMGF010000101.1	347637	350782	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSQHTT00000033949.1

ATGACGGTTGCTGAGTTGCAAGCTAAGCATCAAGCAGAATCAGACGCTATTATATGTACCTTTACCGAGGAACTTGCAATAGATGAAGAATTTGCAAGCGTGTTAATTGAAGAAGGATTTACTTCAATAGAGGAAATAGCGTATGTACCTAAAGGCGAGTTACTTGAAATTGAAGGCTTAGATGAAGAGATGGTTATTAACCTTCGAGAACGAGCGAAAGATATTTTAACAACACGCGCCTTAGTGCAGGAAGAAAAAATTGGTAAAGCTGAGCCTTCAGAGGATTTATTAGCCCTTGAAGGATTAGAAGCTCACCTTGCATATGTTTTTTCGCAGGCACAACCAGCTTATGAATCCCAAAGCAGGCGTGGTAAACGTGCTAAGAAATCTCGCGCAGCAGCACCGTCTACACTACTGCAAGCATTTGAAAAACCTGCAGCTCCTGTTGAGCGTGAAATTAAAATTGGTGAAACAATCACTGTTGCTGAGCTTGCTAATAAAATGGCGGTTAAAGCGGTTGAAGTGATTAAAGAAATGATGAAAATGGGCGCTATGGCAACCATTAACCAAGTCATTGATCAAGATACAGCTTCAATTGTTGCTGAAGAAATGGGCCATAAAGTGATTCTAACAAAAGAAAATGAGTTAGAAGAAATGCTATTAGCTGAAGCGAAGGAAGATGGAGATAAAACATCTCGCGCACCTGTGGTCACGATTATGGGGCATGTTGATCATGGTAAAACATCATTACTTGATTATATTCGTAAAGCGAAAGTAGCCGATGGCGAAGCTGGCGGTATTACGCAGCACATTGGGGCTTACCATGTAAAAACTGACAAAGGCATAATAACCTTCTTAGATACACCAGGACACGCGGCTTTCACATCAATGCGCCGTCGTGGTGCTAAAGCTACAGATATTGTCATTTTAGTTGTGGCAGCTGATGATGGTGTGATGCCACAAACAATTGAAGCGATTCAGCATGCTAAAGCATCTGGCATTCCGTTGATGGTTGCTGTTAACAAAATTGATAAAGAAGGTGCAGATTTAGATCGCATTAAAACAGAGCTTTCGCAACACGATATTATTTCAGAGGAATGGGGTGGCGATAATATCTTTAGTTATGTTTCTGCAAAATTTGGTGATGGTATTGATGATTTGCTTGATAGCATCTTATTACAGGCTGAAATGCTTGATCTCGAAGCGGTTGCAACCGGTGCTGCATCGGGTGTTGTTATTGAATCTCGTCTTGATAAAGGTCGAGGTCCAGTGGCGACTGTGCTGGTTAAACACGGTGAACTTAGGCAAGGTAATATTGTACTTTGTGGTCTTGAATATGGTCGAATTCGTGCCATGCGTGATGAAAATGGTCGCCCAATGGAAAGTGCAGGGCCGTCTATCCCTGTTGAGATTTTAGGCCTTTCTGGTGTGCCTCAAGCAGGTGATGAAGCGACAGTTGTTCGTGATGAGAAAAAAGCGCGTGAAGTTGCTTTGTACCGTCAGGGCAAATTCCGCGATATTAAACTCGCGCGGCAACAAAAAGCTAAACTTGATAATATGTTTAGTAATATGGAAGCAGGAGAAGTGTCAGAGCTTAATATCGTTCTGAAAGCGGATGTACAAGGCTCTCTTGAAGCTATTATTGAGGCATTAAACAAACTATCAACAGACGAAGTGAAGGTGAATATTATTGTTCATGGTGTTGGTGGTATTACAGAAACTGACGCCTCACTTGCTTCTGCCTCGGGTGCAATTGTGATTGGCTTTAATGTTCGTGCAGATGCTCCTGCGCGTAAATTAATTGATAATGAAGGAGTTGACTTACATTACTATGGCATTATCTATGACTTGATTGATGAAGTTCGTAGTGCGCTGGGTGGTTTATTATCTTCTGAATTTAAACAAGAAATTATTGGTGTTGCAGATGTACGTGAAGTATTTAAATCCCCAAAAATTGGTTCTATTGCGGGTTGTATGGTAACAGAAGGCAAAATTAAACGTAACAATCCAATTCGAGTGCTTCGCGAAAATATTGTTATTTACGAAGGTGTACTTGAATCCCTACGCAGATTTAAAGAAGATGCAGAAGCAGTGCGTAACGGTATGGAGTGTGGTATCGGTGTTAAAAACTACAATGATATACATGTAGGCGACCAAATAGAAGTATATGAAATTATTGAAATTAAGCGCACACTTTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR010214	Repeat	Transcription termination factor NusA, C-terminal duplication	Interproscan
IPR010995	Homologous_superfamily	DNA repair Rad51/transcription factor NusA, alpha-helical	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-