Gene detail

Detailed information of ENSQHTP00000019073.1 in Bathymodiolus brooksi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSQHTP00000019073.1	DNA REPAIR PROTEIN REV1	3	57625463	57710006	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSQHTT00000019074.1

ATGGCAACAAGAAAAGCCAAACCAAATGGTCAATACCATTTAAAGTTGAGAGATGTAATAGATTTTATGAAGGAACAATCCGTGAAAGACATTCCAGGTGTTGGTTGGTCAATGTCACGTAGATTACAGTCCATGTCTGTTTCTACCTGCGGAGACTTACAGAATCTGTCTCTTGGAACACTACAGAAGGAATTTGGTCCTAAGACAGGACAGTCTTTATACAAATATTGCAGAGGACAAGATGATAGACAAATCAAATTAGAACAGGAAAGGAAATCTGTTTCAGCTGAAATCAATTATGGAATAAGGTTTAAAAATGAATATGATGCTGATAAATTTCTAGCAGAATTATCAGACGAGGTCCATAACAGATTAGAGAAAATCAGTATGAAAGGGAAAACTGTTACACTTAAACTGATGATCAGAAGGGAAGATGCTCCAAAAGAAACAGCTAAATTTATGGGACATGGATTATGTAACCATATTTCTAAGTCATCAACCCTACCATTAGCAACAGATGATCCTAAGATAATAGCCAAGGAATGTCTGACAATACTGAAACATCAACATTTAAATGTACTGGACCTAAGAGGTGTGGGTATTCAAATACAGAGACTAGAACCTGCTGTAGTTGGTTCTAAGACTGCAAAGGGTCCTGCTAGTATCCTGAACTTTACTGTTGCAAAACAAGATATTACGAAAGCTACAGAAAAAAAGAACTGTGCAGTATCTTCACCTGTAGTTCAGAGTAACACCAGATCTGTCCAATCAGTGGAGGCCATTCCTCAAGACAAAGAGAAATCATGTGAAAACATGCTGAAAAACTTTCTAACACACAATAAGAAACCTGCTTCATTACCTACAACATCAGAATCTGGAAATAAAGATGAAGATATCTGGACTAACTCTGAAATTGTATTAGAAGATGCAGGAAATTATTATCAGAAGAACAAGACATGTTCTGATAAAACACAGGACTTAGTTGAAGACATGACGAGGAGGAAAAATCTTTTGGTTATGCCCCCACTACCGTCTTTGAATATTGAGACTTCCCCAGTTTCAACAGGTAATACTCAACTACCATCATTAAACCTTGAGACGACACCACCAGGGGTACCAGTTACACCAGAGTCAACAAGGAACAGGACTGATACACCTACAGACTATTTTCCATCACCTTCACAGATAGATCCAGATGTCTTGAATGAGTTACCAGCAGATATACGTCGACAAATTACGAATGAAATGGAGACGAGAAAAAAGAAGTCTAATAAAACGTGTATAGGTAGTGGAAATCCTGCTTCTACTGCCAGCAGTGATAATCCAGGATGTTCTCATTGGTCAAGTCAACAAAATATACAACCAATCATAGACCAGAATCAAGTTGATGACAGTAGATCCATTGTGCCACTTCCATCATTGTCCCAGCTTGATGAAAGCTGTTTTAATGCTCTACCAGAGGAGATACAAAGAGAGATTAAAAATGCTTATGCCCATCAGGACAGTGAAGGTGGTACTGAAAAACAAAAATCTCCCATTAATAAGAAAACACATGATTCTGTAAAACTTACCTCTCCTGCAAAAAACAAATCACCTGGAAGAGGGAAGAAAAATAGTCCTACATTCAAAGTACCCAAAGGACGGCCAGGAAAAGGAAAACCAAAGAAGTTGGAGTTTGTATGCAAGAAACAGCCTAAAATTGATGTAGCTGTGTCAGGAAAGAAAAATACAGAGGTACAATCTACAAACATTATCACAATATCTGATGAAGTGATTGATGTAGAATCATCCAGTACTGTTAAAGGTCCTGTGAACAGCTCAAACATTGTACAGGAGCCAGTGAAGAGCTCTCATATCATACCAGAAACAGTGAAAACGTCAGTGAACCTTTGTGGAGCTGTTACTATAATAGAGATCAGAGAATTGCTGAAAGAGTGGCTTCATACATCTAATGACCCTGAAAAGGATGATGAAAATGTGATGACAGATTATCTCACAAGCCTTGTTTTAGATCATAATTTGGAGCAAGTGGATTTGGTAATCAAGTTTCTTAATAGACATATCAGGAGAATGGACAGTTCAACGTGGATGTTGGCTTTAGATAGAATATTGGAGTCTGTACAAAAAGTGATGAATGGTGTTTATGGCAGTAGATTAAAACTGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11799	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF14377	UBM	Ubiquitin binding region	Motif	Interproscan
PF16727	REV1_C	DNA repair protein REV1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001126	Domain	UmuC domain	Interproscan
IPR017961	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR025527	Conserved_site	HUWE1/REV1, ubiquitin-binding motif	Interproscan
IPR031991	Domain	DNA repair protein Rev1, C-terminal	Interproscan
IPR036775	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR038401	Homologous_superfamily	Rev1, C-terminal domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR047346	Conserved_site	DNA repair protein REV1, ubiquitin-binding motif 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45990	DNA REPAIR PROTEIN REV1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0017125	Molecular Function	deoxycytidyl transferase activity	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan
GO:0070987	Biological Process	error-free translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-