Gene detail

Detailed information of ENSQHTP00000012742.1 in Bathymodiolus brooksi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSQHTP00000012742.1	DNA-DIRECTED RNA POLYMERASE	2	69382670	69560305	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSQHTT00000012742.1

ATTTCTGATTTTCCTGGAAACTATGAAAGCTACGATGATTCTTGGAGTAAAAAACAGTTTGAAAAGAATTTTAAAATTGATATGATAAAAATGAGCCATGATGAACTAGAATTTGACATGGTTGGAGTTGATGCATCTATTGCTAATGCATTTAGAAGAATTTTACTTTCAGAGGTACCGACAATGGCAATAGAGAAAGTTTTTATCTACAATAACACATCCATTATACAAGATGAGGTGCTGGCACATAGGCTAGGGTTGATACCAATAAAAGCTGATCCAAGACTATTTGAATATCGACAGGAGGGAACTGCAGGAGATACTTTAGAATTCCAGTTGAAGGTCAGATGTACTAAATGTTTAAAGGTTACAGACACTACAGATCCAGATGATTTGTATAAAGACCACAAAGTTATGGTTCTTTGTTTGTATTTTTCTATATTTTTATTTCAGTTTAAGGAAGGTGAAATAAGACCTGTGCATGATGATATTTTAATAGCAAAGTTACGACCAGGACAGGAGTTAGACATTAGAATGCATTGTGTAAAAGGCTTAGGAAATGATCATGCTAAATTTTCACCTGTTGCTACAGCTTCATACAGACTTTTACCAGAAATCACTTTATTAGGACCAGTAGAAGGAGTTTTGGCTGAAAAATTACAGAAATGTTTCTCCCCTGGTGTAATAGAAATAGAGAAAGTAAAAGGAAAGAAAAGGGCACGGATTGTGAATGCTAGAAAAGATACTTGTAGTAGAGAAGTTTTCCGTCACGAAGATCTGAAAGAATTAGTCAAGTTGGAGAGAATAAGAGATCACTTTATATTTTCTGTGGAATCTACAGGTGTCTTGACACCAGATGTGTTAGTATGTGAAGCCATTCAAGTTTTAATGAAGAAATTATGTACTAAAGACTATACATGTACCATCATATATTTTTCAGGAATAGTATGTTATGGACAAGATACTTTTTACTTTAGTCAAAAACCTCAAGACAAATCAGTCGTAGAAGGTACAGAGACGATACTTTTGTGTGATGTTAATAGTCGTAGACATATTGTGTTTGACTGGATTCAGTCTGGTAAGCCTGTGACAAATACCAGTAGACGATTCCAGGAAGGAAGTTATCTGCGTATTTTACGTGTAACAAGAGAGGATGATACTGGACCATTTCAGTGCATTGCTACAAATGTTACCTCTGGATTCTCCCTCCAGAGTGGAGAGGCATCATTAAATATTCAATGGATTGATGAACAAGCTATTGTTGAACTAAAGCGACCAAAAGCAGACGACATATCCCTGGGATCTGAGCTATTGCTAAAATGTCAAATTACCGGAAATCCAGAACCTACTTTCCTGTGGTATCACAACAAATTCAGAATGTTTAACACAGACAGAATAAAGATAGTAGACGGTGGAAGTAAGGCTAGAATAAGTAATATTAATGCTGAAGATAATGGTATATACTCTTGTCGAGCAGAGAATGTAGCTGGCGCCATTGACAGTACAGTGGATTTCCTGCTGAATAAACCAGCACCTGGAACACCACATCTGATAGAGGCCAAATTCACAAGATCGTTGCTGGTTATGAAGAACGATCCTGCATGGTTAGACTGTCCGTTTGTAGCTGCTTACAGAATTGACTGGTTTTCTACACATGAAAAAATTACGAATAATTCAAGGCATACAGTTTATCCCAATGGAACCCTGTATTTTCCACATGTTCGACCGGCAGATGAGGGTAGCTACAGATGTGAAGGTTTAGGAAACAGTAGAGACATCCCTGCACAGACGTTTACAGCAGAACTAACATTAACAAATTTTAGAATGGATTTATTTGAGCCACGGTTAATACCAAACTTCCCGATAGTTATACCAATTCATAAGCCATTTACAGTCAAAGTCTTTTTGCCGTATGGACAACCCGAGCCAAAGATCAGTTGGTTTGACAGAAATGGTGACCAGATAGGAACGACAGGGAACATATATGTAGATGACAATACCTTAGTGTTTAAACACCCTCAACAGATAGACACAGGAAACTACACCTGTCTGGCTTCTAACTTAGCTGGCATCAAAAAACAAAGCGTTTGGATCATTGTTTCTGTACCACCCATCATAACAAGACCTCCACAGGATAAAGATGTAGAAGAAGATGGTCGTGTGGATTTACAATGTCAAGTTGATGCAGACACTGCTTACCCTGTCACTACTGTTATATGGATGAAAAATGAACAGCTTATTAAATCTGGTTCATCAAGACATCATATGGACCTTGAGCGAGGGATATTAACCATACCAATAGTTTCTATCCGTGATGCTGGAACGTATGCTTGTGTAGCTAACACCACTGGACAAGATCTTGTCATCTCCAGTAAAGCTTATCTTAGAGTTACCAAAAAACTCAAGTTTAGTCCTCGACCAAAGGATTCCTATATAGAACTGCACAAAAATGCATCAGTACTATGCAAAGCAGAAGGTGATGGTCAGGTGAAGATTAGGTGGTTCAAAGATCGAAGTATAAATATTGCAGAACATATCACAAATATTGACGGAACTTTGACCTTCCTTGACGTTCAAAGGTCTGATGCTGGACGGTATACTTGTATGGCATATACAGATAAACAAGGCAGTATAAACTCAACCATTAACATTGATGTTGTAGTTCGACCCAAATTTCGAGTTGTTCCTATAAATACCACAGTAGTAGAAGGACAATCTGCTATGATTCATTGTGTAGCTATAGGTGAACCAAAACCTAGAATTTATTGGGATAAAAATTACTACCAGAACAGTTTTGATCCAAGTAGAATACAGATTTTTAATAATGGAACTTTACATTTTACAAATGTTTATATGGAAGATAAAGGAAGATATGGTTGTACAGCTAATAATTCAGCTGGACATATACGAATGGAAGCAAATCTAAATGTAGCAACTGAAAAAGATGGAGTTAGCGAAGAGGAAGGGATTGATATGGTTAAGACCATCATCATCGCTGTGTGTAGCGCTGGGGCTTATTTTGCACTGGTTATTGCATTGACAGCTTATTTCAGCTACAGACTGTTTATGAGAAGAAAAAGATTTGCTAAAGCACTTGAAAACGGTGACACAAACAGGGAGCAGCATGAATTATTGGTGAAGGACCGTGACAGTGAATCTCGTACACAATTACGTAGTGATAGTGACAACAGGTCACATGTCTCTGGAATGAGTTCTCATCCTTCTCACTCGTCACAATCTCAATCAACCACCTCCCAATCTCACTCACAGAAAAGTCGTAGAGGCAGTTACGATCGATTACAATTCCCACGTCATGATCTTGTTACCATAGGAATGTTAGGTAAAGGACTTTTTGGTGATGTATTCCTAGCTAAAGCCAGAGGTATAAAAGATTATGAGCCAGAAACCTTGGTTGTCGTAAAGTCACTTCTAGTTAAAGATGAACATTTATTTTTTGAGTTTCGACAAGAATTAGATATGTACACCAAACTGGACCATCCATGTATAGTTAAAGTATTAGGAGTCTGTAAAGAAATTGAACCACAGTTTGTTATTACAGAATATTGTGACTGGGGTGATTTAAAGCAGTTCCTATATGCAACAAGAGGAGATATTAATGGCAGATTACCACGCATACCACCTCTAACAGCTGTTCAGAAAACTAATATGTGTCACCAGGTGGCATCAGGACTGGAACATTTATCCAATCATAGATATATTCATAGAGACATAGCTTCTAGAAATATATTGCTGACATCTAGACTTGAACTTAAGATAACCAGCTTATCTTTGTGTCGTGATGCTTATGCAGGAGAATATTATCCGTATGCACAGAACCTTATTCCGCTCCGCTGGATGCCACCAGAAGCGGTATTTGAAGGAGATTTCTCAACCAAAAGTGACATTTGGGCTTTTGGTATTTTTGTATGGGAAGTGTTTCATCTTGGAGACTTGCCATATTCATCTTCGACAGACGATGAAGTGATGAAACATCTAAAAATAGAAGACTTGAAATTGACAGTCGTGGATATATGTCCGCCAGAAATTATTGACTTGATCAAGAAATGTACAACAATATGTCCAAAGGAAAGACCATCATTTAGTGAAATTTGTTTGTTTTTTGGAGAATATGTGTTGAAACTACAATCGACTGCTCCTGTTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01000	RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	Domain	Interproscan
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001514	Conserved_site	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011262	Domain	DNA-directed RNA polymerase, insert domain	Interproscan
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR022842	Family	DNA-directed RNA polymerase subunit Rpo3/Rpb3/RPAC1	Interproscan
IPR033901	Family	DNA-directed RNA polymerases I and III subunit AC40	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR050518	Family	Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11800	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-