Gene detail

Detailed information of ENSQHTP00000007858.1 in Bathymodiolus brooksi Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSQHTP00000007858.1	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	11	23953851	23957498	+

Gene Structure

More details in Jbrowse Sequence

CDS

ENSQHTT00000007858.1

ATGGCTTTGTTTGAAGTGGGAGAACATGTTTATAAGGATTTTGTTGGAATACGCCACTCCAAATTAAGGGAAATAGAAGAGTCGATGAAGAGCAAAAACAACATGATGATTATTGAAGCCTCTAAGCAGCTTGGAGAAATTGTAGTTTATTCACAACAGAACTGTGGGCAAGGGTACACTAATGTGATAAGAGACCGTATAGCGTGCATCAAGCAAAAAATGCAACAAGAAAAAAGCGAACAATTTTTATCCTCTTCTAACTCAGGAGTGAGAGTTATTATAGGAGCAGGTCTAAATATTGTAGACGTTTTGATGTCAGATGAATACAAAACCATTTTTGTAACGGGAACTCCTGAAATCATAGAAGCAATGACAGAAGATGATATGGTTGAAACCTTTCAAAAGTTTGGCAAAATTGGAAGAATTGACCATTTTCGAAATAGCAAGAATAAGAATAATTGGGGGAAAATTACTTTTGAGAAGAAGGAAGAAGCTGAACTTGCAGTGCGAATGATGAATGGAAACGTAGATGTTGGAGCTCGACCAAGTATTGGTTTTCGAAGTGCTAATATCTTTTCTTTTCGTTCCAAATTACAGTGGTGTAGACGACCATCACGATGTTTTGGATTCGTAAGATTTTCAAATGATATACTAGCTTCAATGTCATTTAACATTCAGATCACTGTTGGTGGAACAATTGTAAGGATTAAACCTAGCAAAACAAATTCTGTTGAAGTTCACGTTAGTAATCTTAACCCACATGTCGATGAGGACGTACTCCGTCAAGGATTCGAAAATGCTTTAGGTCTTGATCCGAATGAGATCGTACGAGTTACAGTAATACGACAAAGGGTAGTAAGCACATCTGCTGACATGTTACAGACATTTCGACAACGCATCCGTAGACAGATTGAAGAATATGTTAAAGAAGGCAATTACGAACTCGACCTTAGAAATCCGAAAGAGGCAGACTTTACATATTTGGCCTTTGTCACGTTTTCAAAACCGGAAGAAGGACTCGCTGCATGTGCAGGCATTGATCATAGGTTTGTAATGAACAATGAGGTTGTATCTATGAAAGCGGATTTGAAATCTTCAGTCATGATTCCAAAACTAATTTATGCAAAATACAAGCATGTCGTTACCCCTTTGATAGATAGACTTTCTAAAACTGAACGAGCGACTATTCGACAAAAAGAGCTGAAAAATGAAAACATAGTCATGGATATACACACGGACAATATAGAAACCATGATAACGGTTAAAACTGACATTTTATCAGCAATTAAAGGCCAAATAATGAGCGTAGAATCAACCGAAGACATCAGTTGGCTGTTTACATGGGATGGTAGAAGGCTAATAAAGACAGTTATGGAAAACACGGAAACAACAATCGTAGCAGATGAACGGATTCTGTCCATATCTGTTCACGGCTCTGACAGAAATAAGGATAATGCTATAGAAATGCTTACAGAATATTTGAAAGAGTTGAAATCTGGAAAAACCAAAAAGTTGTCTTTGAGGGGATCAGACAAACCACCCGGTGTGATGAAGGAATTAATGTTACGATACGAATTTGACCTTAATAAACTCAAAATGGACACTGGTTTAAAATGTGTAGAACTTGATCATCGTTTTCACGTTGTCACTATAATTGGTGATTCAAAGACTGTCGAACAATGTATTTCTCTAGTTGAAAAGGTAATTGAAGATGTGCGTAAGAAACGCGAAATGCAAAGTTTAGAACCCGCTAAAGAACGAGATTGTGGAATATGTTTTTGTCCAATAGAAGAAGACGAAATACACCGACTTGAAAGTTGTGGCCACTCGTATTGTAAGGAATGTGTGGAGCTTCAGTTTAAATCTGCTGTGAAAAACAACAGTTTCTCCATCCTCTGCAGTATGGAGGAATGTACTGAACCATGGGCTTGGAAAGATATTTCGAATTTAGCTGTAAAAACTGGAATTCCTGTTGCCATCTTGGTGAGTAAAGCAACAACTACATTCGTAACGCAGAACAAGAAAGAATATCGATACTGTCCCACAGCGGATTGTCCAATAATCTACCGCGTATCTGAGAAAGAAAAACTGTTTAGCTGCACGGAATGTGAGATACGTATCTGCACAGCATGTCATAACCAATTCCATGATGGATTAACTTGCAAAATGGTGGAAAGCATGAAAAAAGAAGATGACGGTGGTTTGAAACTCTGGATGCAACAGAATGCTGGTAAAGCTAAATATTGTCCAAAATGTTCAACCCCAATTGAAAAAACACATGGATGCAATCACATGGAATGTCTTGGATGCAAAGCGCATATTTGTTGGGTATGTCTGGCATATTTTACATCTGGAGGAGAGTGTTATGGCCATTTGTCAAAAATGCACGACTCATTCGTGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR051628	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-