Gene detail

Detailed information of ENSJPOP00000036530.1 in Oasisia sp. SBJ-2009 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSJPOP00000036530.1	NUCLEOPORIN	OZ024866.1	21802904	21843370	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSJPOP00000036530

ATGGACAAATCTAAAATAATAGCATCCAAAATGTTTATCACGACGATATTGGAAACGAAGGATGAACTTGATGAGAAACTGGAAAAATACTCGGCACTGATCGGCAAGTTGAGTGCTGGTGTGTCGGAGAGTGCAGCAAATGATGCATATCAAGCTTACGTATGCAAGGGACAGCCACAACATGAGGAGGTACAACTTGGTCTGTTGTACAACATCCTGAGTGATACAAACACAAAGACAGCAGCCACTTATTACCGAGACATGACACTGACCAGTCGCGATGGTCTCACAAAGGTACTGACCGTCACAAATCAGCTTATCTACGAGAAGTGGATTAAGATGCTGGACACGCCCAGAACACAGCTGCTGTGGTTTGCAAAGGAACTGGTCAAGAACGGAGTGACCGGGGCGGACAGCGTCATACACTCTCTCATACGACAAATAGCAGGAGGAGATGTTAGTGCAAGAAACATCTGGCTGACAGAATCCGTACTCGATATATTAACAGAACACAGACAGTGGCTGGACAAACTGCCCCAACTGTTGCCCATTGCACTGTACACATTCCTGAGGGTGATTGTCGACCACGGCAACCGCATGTTCCTCAACCTACGGCAACGAGAAGTAGAATTCTGCATATCGCTACTGAGAGAGAAGTGGATAAACTGCATTGTGATTGGCCGGGACCTTGTCCGACTGCTCCAGTACGTCGCACGCACACCGGAATTTGAGAAACTCTGGCGGGACATTCTGCACAACCCCACTGCAATCCACCCCCAGTTTACAGGCGTCCTACAGTTGTTGAAGATGCGTACGTCAAAACGCTACTTTGTGAGTCGACTCACGCCAGACATGGAGAACAAACTACTCTTCCTCACCTCAAAGGTAAAATTTGGTCAACAAAAGAGGTACCAGGACTGGCTACAAAGACAGTATCTGTCGACTCCAGAGAGTCAGTCCTTGCGTTGTGATCTCATCCGCTACATCTGTGCTGTCATACATCCGTCCAATGAGCTGCTCTGCTCTGACATCATCCCACGCTGGGCTGTCATTGGCTGGCTGCTCACCACGTGTACTTCGAATGTTGCAGCGTCGAATGCAAAGTTATCACTGTTCTACGACTGGCTATTCTTTGATCCGGAACACGACAGCATCATGGCTATTGAGCCGTGTATACTGGTGATGCATCACTCCATGAGGCCTCACCCTGCCATCACTGCCACACTGCTTGACTTCATGTGCCGGATAATGTCCAATTTCTACCTGCCACTGGCGGTTGAAGTGAAGCAAGGCATTTACACATCATTACGCTGCATCATGGAGAAGCGAGTGCTCCCATCACTGTCACCACTCTTTGACAACAACAAACTGGACAAGGAACTACGGAGTATGATCCGCGAGAACTTCCAAGAGTTCTGCTCTGCGGAAGCCATAAAAGACGAGCCCGGctcaaacaacaacaaccagaAGCTGATGATGTCGAAGGACCCGACGGCCAACCACTTGAACGAGAGCAACAACATGACTGACATCACGGCCGAGTTCagtgaggaggaggaggacgaCATCCCACTGCAGAAAATACGGAGTGAAATGAACTTTCAACCAATCAAAGAGCCACCAAAGTTTGAGCCGATCGACATCACAGAGCACGTAGAGCAACTGGACGGGGAGATCAAGCGACTAGTCACTGTGCTGCAGAAAGAAAGtgACAACGAGACTCAGTGTGAACTGATGGACCAACTAATGCAGACAGTGATCAGGGAGGAGTTTGACCAGGACACGGCGGTGATCCTTGCAACGTGTCTGTGTCAGTTGACAGCAGCTCAACTCAACAACAGCATCTTGCCACATGACTTCGACGACGAGTTGTTAGAGGATTCCATAGGAACACCCTTGTTTGTGATATTTAGGAACATATGTCAGACCTCGGAGGAGGACCCGAGTCGACAGCCTCTGCTCATGCTGCTGGAAGAGATGTCTCACAAGCAGACCCGCATCGCTTACCTCTTCCTCTACTTCCTCAAAGTCAGTAAAGTACAGACGGATGAGAAGATGCTGGCGTACAAAGACTTCTGCAAGAACATGGAGAACCGCGACTTGAAGACTTGCCTCATGACAGATCTCAGGCTATGCCAAGAGGACGATGTCCGGTTATTTTCATTTCTCATCCCAGACATCTACACACATTTTCCCAGCATAGCCATAGGCAATTCCGAACTGTTACATCTCATTGTGTCGTCCATAGATGCAACACAGCTGCAAGATCTGGTGTGTGAGATCCTGCGTGGCCACCTAGTGATGTTCAGGAAAGACTCCTTCCTCTCAGTATTAAatgCCAGTCTGGACTGGGACACGATAGAGCAGTACTTCCTGTGGCAGCTCATTGCCACACACAACATCCCCATAGAACACATCATGCCCATCCTGCCCAAGCTCGACTTCACAGCTCATGCTGAGGCCCTCAGCAGCCTCTTGATCCAACTGAAGCAGGACTGTCCGACGGAGGAGCTCCTCCGACCCATCCTCCGGCGCGAGTGCAAGAAGAATGACTTCTTCACTGTGTCCATCCTCAAGTTCTGGGCCCAGGAATACGAAGACAAACTCGCAGACCTGCTCCAGTCACAGCTCACTCGCTGCGGACCCTCGCCAAACAAGAAGCGACAAAAACATCAATCTCAGGCAGCAAACAGGGCCAAGGACAAAGACCACTCGATGATTGAACCCATCTTGTCCCATCTGGAACACATGCGACAGTGTTGTCGGAACATCCAGTTTCTCATGCATGAGTTGGTACAACAAGGGCTACAACATGTACAGAACACCTGCCCAGAGACGCTCAAGTCAAAATACAGTGACCTGCTGGCCCTGGTGGAGGACATCGATGAGATGAAGACGACGCGAGTGTTGCGGGCTGTCCCCAGTCGCCGGGCGTCCGCCGCCGCCGCCATCGCCAAGAGACAGGGCAACAAGAAGTCACCGCTGATTGACGACAGCGACAACAGCTTGTCCGACTCGAGCGAGGAGGACGACGTGAAGCCACCTAGGAACAAGAAGGCGCGCAAGTCGGCCCCAGTCATCCTGGACGAGGACGATTGA

Transcript

ENSJPOP00000036530

aATTTCTTAAATATATCACATATGCAAGTCAACGTTGGCCATAAACAATAGTAGCTCCAACAAACAGTTGCATATACGCCGCATAACTAGTTTAGAATGCAGGGCCGTATAATGGTGCGGTACAAGTTCAGCATATCAATGCGCGTATGTCGAAGGCAGAGGTGTCTTGTCCGCTGAAGCATTTTGCAGAATTTTAGCGATTAGCGTAGACGAATAAATGCAAAGATGGACAAATCTAAAATAATAGCATCCAAAATGTTTATCACGACGATATTGGAAACGAAGGATGAACTTGATGAGAAACTGGAAAAATACTCGGCACTGATCGGCAAGTTGAGTGCTGGTGTGTCGGAGAGTGCAGCAAATGATGCATATCAAGCTTACGTATGCAAGGGACAGCCACAACATGAGGAGGTACAACTTGGTCTGTTGTACAACATCCTGAGTGATACAAACACAAAGACAGCAGCCACTTATTACCGAGACATGACACTGACCAGTCGCGATGGTCTCACAAAGGTACTGACCGTCACAAATCAGCTTATCTACGAGAAGTGGATTAAGATGCTGGACACGCCCAGAACACAGCTGCTGTGGTTTGCAAAGGAACTGGTCAAGAACGGAGTGACCGGGGCGGACAGCGTCATACACTCTCTCATACGACAAATAGCAGGAGGAGATGTTAGTGCAAGAAACATCTGGCTGACAGAATCCGTACTCGATATATTAACAGAACACAGACAGTGGCTGGACAAACTGCCCCAACTGTTGCCCATTGCACTGTACACATTCCTGAGGGTGATTGTCGACCACGGCAACCGCATGTTCCTCAACCTACGGCAACGAGAAGTAGAATTCTGCATATCGCTACTGAGAGAGAAGTGGATAAACTGCATTGTGATTGGCCGGGACCTTGTCCGACTGCTCCAGTACGTCGCACGCACACCGGAATTTGAGAAACTCTGGCGGGACATTCTGCACAACCCCACTGCAATCCACCCCCAGTTTACAGGCGTCCTACAGTTGTTGAAGATGCGTACGTCAAAACGCTACTTTGTGAGTCGACTCACGCCAGACATGGAGAACAAACTACTCTTCCTCACCTCAAAGGTAAAATTTGGTCAACAAAAGAGGTACCAGGACTGGCTACAAAGACAGTATCTGTCGACTCCAGAGAGTCAGTCCTTGCGTTGTGATCTCATCCGCTACATCTGTGCTGTCATACATCCGTCCAATGAGCTGCTCTGCTCTGACATCATCCCACGCTGGGCTGTCATTGGCTGGCTGCTCACCACGTGTACTTCGAATGTTGCAGCGTCGAATGCAAAGTTATCACTGTTCTACGACTGGCTATTCTTTGATCCGGAACACGACAGCATCATGGCTATTGAGCCGTGTATACTGGTGATGCATCACTCCATGAGGCCTCACCCTGCCATCACTGCCACACTGCTTGACTTCATGTGCCGGATAATGTCCAATTTCTACCTGCCACTGGCGGTTGAAGTGAAGCAAGGCATTTACACATCATTACGCTGCATCATGGAGAAGCGAGTGCTCCCATCACTGTCACCACTCTTTGACAACAACAAACTGGACAAGGAACTACGGAGTATGATCCGCGAGAACTTCCAAGAGTTCTGCTCTGCGGAAGCCATAAAAGACGAGCCCGGctcaaacaacaacaaccagaAGCTGATGATGTCGAAGGACCCGACGGCCAACCACTTGAACGAGAGCAACAACATGACTGACATCACGGCCGAGTTCagtgaggaggaggaggacgaCATCCCACTGCAGAAAATACGGAGTGAAATGAACTTTCAACCAATCAAAGAGCCACCAAAGTTTGAGCCGATCGACATCACAGAGCACGTAGAGCAACTGGACGGGGAGATCAAGCGACTAGTCACTGTGCTGCAGAAAGAAAGtgACAACGAGACTCAGTGTGAACTGATGGACCAACTAATGCAGACAGTGATCAGGGAGGAGTTTGACCAGGACACGGCGGTGATCCTTGCAACGTGTCTGTGTCAGTTGACAGCAGCTCAACTCAACAACAGCATCTTGCCACATGACTTCGACGACGAGTTGTTAGAGGATTCCATAGGAACACCCTTGTTTGTGATATTTAGGAACATATGTCAGACCTCGGAGGAGGACCCGAGTCGACAGCCTCTGCTCATGCTGCTGGAAGAGATGTCTCACAAGCAGACCCGCATCGCTTACCTCTTCCTCTACTTCCTCAAAGTCAGTAAAGTACAGACGGATGAGAAGATGCTGGCGTACAAAGACTTCTGCAAGAACATGGAGAACCGCGACTTGAAGACTTGCCTCATGACAGATCTCAGGCTATGCCAAGAGGACGATGTCCGGTTATTTTCATTTCTCATCCCAGACATCTACACACATTTTCCCAGCATAGCCATAGGCAATTCCGAACTGTTACATCTCATTGTGTCGTCCATAGATGCAACACAGCTGCAAGATCTGGTGTGTGAGATCCTGCGTGGCCACCTAGTGATGTTCAGGAAAGACTCCTTCCTCTCAGTATTAAatgCCAGTCTGGACTGGGACACGATAGAGCAGTACTTCCTGTGGCAGCTCATTGCCACACACAACATCCCCATAGAACACATCATGCCCATCCTGCCCAAGCTCGACTTCACAGCTCATGCTGAGGCCCTCAGCAGCCTCTTGATCCAACTGAAGCAGGACTGTCCGACGGAGGAGCTCCTCCGACCCATCCTCCGGCGCGAGTGCAAGAAGAATGACTTCTTCACTGTGTCCATCCTCAAGTTCTGGGCCCAGGAATACGAAGACAAACTCGCAGACCTGCTCCAGTCACAGCTCACTCGCTGCGGACCCTCGCCAAACAAGAAGCGACAAAAACATCAATCTCAGGCAGCAAACAGGGCCAAGGACAAAGACCACTCGATGATTGAACCCATCTTGTCCCATCTGGAACACATGCGACAGTGTTGTCGGAACATCCAGTTTCTCATGCATGAGTTGGTACAACAAGGGCTACAACATGTACAGAACACCTGCCCAGAGACGCTCAAGTCAAAATACAGTGACCTGCTGGCCCTGGTGGAGGACATCGATGAGATGAAGACGACGCGAGTGTTGCGGGCTGTCCCCAGTCGCCGGGCGTCCGCCGCCGCCGCCATCGCCAAGAGACAGGGCAACAAGAAGTCACCGCTGATTGACGACAGCGACAACAGCTTGTCCGACTCGAGCGAGGAGGACGACGTGAAGCCACCTAGGAACAAGAAGGCGCGCAAGTCGGCCCCAGTCATCCTGGACGAGGACGATTGAGCCGAGTGAACACGCAGTAaggttgtgtttgtgacagaggGAGCGGGTCACCTGACGATGCGTCGCTGTCACGAAGTACCACTCACCGACATGTCCTGTAATGACAGTGTCATCGTCGGCATCAACACCGCGCGGCACGCATCGAGGTGTACGTCGCCACGAATGTGTGACGCTGCCTGGCGCTGGATGCACTGACAGACACGTGACACGGACGTCGTGTAGGAGCTCTTCATGCTGTCCAGGAGCTCTTCACAAAGTGTAGGAGCTCTCCACGCGGTCCAGTCTTCAGGCTCGCTGTGGGCAAGACATGCTTGagctggttgtgtgtgtgtgtgtgtagaacGACGGGGCCGCTACAGTAGCTGCTGCCGCTACAGGCCCGAATGAACAAGGATCCACTGCCATGTGTTGGGGCCACAGGCTGGCGTAGACATGTGCCACAGGCTGGCATGGACCAGTGCCACAGGCTGGCGTAGACATGTGCCACAGGCAGGCATGGACATATGCCACAATTGTGTCTTTGTACAGCTGTAGATTGAGAGAAGTGGCGTGTGATTGCCAGGACAGTCAGTGTCTTAGTTGAGTCTCGTAGGAGTGGACGCGACATcgcagtgacactgtcactgacggTAGATGCAAGACAAGAGGCCTGCATGAATCGGAGCGCGTGCAAGAGTGTCCTTTGGCTGAACGCAGGCAATGTCGACAAGACAAACTTGATCAAATTGTACAATATGTCAGCCAGTGCTTGCGGCCAACAGCGGAAATAGTGCTACGTTGGTGTTGACTTCACAAAGAGGTTTTACAAATTAAGTGAAAGATGGCGTGGGCACGGTTCTAGAATGTCGTGTCAATTCGTCCACCATTTGGTTGGGTATTTCAGCCACAACGCAGCATGTTCAGTTATGAAACATCACCAAAATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21240	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-