Gene detail

Detailed information of ENSJPOP00000000023.1 in Oasisia sp. SBJ-2009 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSJPOP00000000023.1	RNA BINDING PROTEIN	OZ024858.1	42739719	42761714	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

ENSJPOP00000000023

CACGTTTTCACAAGGGTCTTTTGTTTCAAAGACATCGTTTTCAATTCGGCTATTTACGGTAAATTGTCGGGCCGGTAAGTGATTGATTTATGAACAGACCGGCGGACAGCACGGCGATAAGTTACGGAAGAGTAGACGGGTAGGTGTAACACTAACAGTCGTGACGGTCGACATAATCTGGACGCCTTCAAAATGCCACAGGGCCAAGTATCAGCCGTGAAAAAATGCCGGTTGTCGACGGGTGATGCGCCTCACATGGAAGGAATCTTGTTTGCCTACGGCaaccctctgctggacatctcCGCGGACGTAGATGAGGCGTTCCTTAAGTCGTATGGACTGAAAGCAAACGATGCCATCTTGGCAGATGATAAACATAAATCATTATACACCGATCTGGTGGAGAAGTTCCAAGTGGACTATGCTCCTGGCGGTGCCACCCAGAACACAATCAGAATAGCTCAGTGGATGATAGGAATCCCCAGGGCCACGACCTTCATGGGGTGTATTGGGAAGGACAAGTTTGGCAACATCCTGGAGGAACGCACCAAGTCGGCGGGGGTGAGGGTGACCTACCAGTACCACGACACCGAGCCCACGGGGACATGTGCCGTCCTCATCACCGGCAAGGACAGGTCGTTGGTAGCTTACCTTGCAGCAGCCAACCTGTTCTCAAAGTCACACCTTGATCTACAAGAGAACCAGGAGCTTCTACACAAAGCTGAGTTCTTCTACTGCTCTAGCTTCCCCCTCACCGTGTGTCCAGACGCGATGCTCGAGATCGGCAAACACTCAGCAGACAACGGCAAGACCTTCATAATGAACCTGTCAGCGCCGTTCTTGTGTTCCATCTTCAAGAAGCCCATGTTGAGCCTCATACCCTACGTTGATATCCTCTTTGGTAATGAGTCGGAAGCTGTGGCTTTTGCTGATGCAAATGATTTTGGGACGAAAGATATCCCTGAGATTGCCAAAAAGATTGCGTCATTACCGAAGCAGAACGGAAAGATGGGACGGACTGTTATAATTACTCAGGGAGCAGAACCCACCCTCGTCTACCAAGAGGGAAAACTGACGTCTTTCCCTGTCATCCACATAAAGAAGGAGGACATTGTTGACACCAACGGTGCGGGTGACGCCTTCGTCGGAGGTTTCCTCGCCCACCTGGTCCAGGGAGACGACACCGAGACCTGCATCCGAGCAGCCAACTATGCTGCCAACCTCATCATCCAACGGTCTGGATGCACCTACCCAGAGAAGCCAACCTTCAAGACCAGCGTCTTCTAGACACGTTCACTCTAGCCTCAGGTTCACTGCCAGATGATGATTCGTCGGACGAGCCTCGTGAGGGTTCCACtgccatatataatataacatatctACAATAATATCgttttatgttggcaaaatccTACTCAATACAACGAGGGTGCTAAAATATGGATGTTTCAAGAGCCAGAGTTTTCCATAAGGATTGTGTTGTTGATATAATACTTGTTTTTATTAGAGAACATCCCAGCGGGGCCAGGAATAGTAGTCTGGAAACTACCTATACAAAATAGCATTCTGAAATTTACTATTGCACCACATATGTTATTCTCGTTTACGTTGGAGAAGTTTTCCGTTAAACAAGAGTATTGAGATCTGATAGGTTAATTACATTGCAATCTGGACTTTGCACTACAGCAAGGAAATGTTTATGGGCTGCCAGATCACTTTGTCattttgtcccatctgatattgCTCAATGTTTATATCGATAGTGCCATTGGAATTACTGAAAATCGATACAAATTGAACATTAATAACACTGTGCTGTGCATctgagaaaaacaaattaatgacaATTATGACACAATCATTAGCCCATCCTGTGATACCAAACAATGTAGCAATATCCTTtgcttatgaagaaattaagtAATTGCACTTTGACCAATGTGTACTGGCTACAGAAATACAATATACTATATTACAATTATCCATTCATCAACTACATACATTTGATCAGGGAGCCAAGCAAGTGATATCTTGCTTACTGCAGCAATGTTCATTAACACCGGTGAAGATAAATCACATGTATGATGATACATTATATTAGTAATAAATGACACCATATGTGGAATATATGTTACCAATTATTCTGTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-