Gene detail

Detailed information of ENSJPOP00000000016.1 in Oasisia sp. SBJ-2009 Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ENSJPOP00000000016.1	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	OZ024858.1	8223422	8236140	-

Gene Structure

More details in Jbrowse Sequence

CDS

ENSJPOP00000000016

ATGAATGACAGACTGGGCTGTGGCTTCAGTGAATACGAAGTACTCAAGATATTCTGTGATATATGTGAGGCCACGTCTCGACTCCACCACTGCCAGACGCCAATCATCCACCGCGACCTCAAGgtagaGAATGTGCTGATGGAGAATGATGGCACATATGTACTGTGTGACTTTGGCAGTGCAACAGCAAGGTTCCTCAATCCAAAGACAAACTCAATACAACAAATAGAGGAAGAATTAAAAAGGTACACGACAGTTGCTTACCGGGCGCCAGAGATGGTTGATTTGTACAGTGGCAAGACAATCACCACAAAGGCTGACATCTGGGCTCTAGGCTGTCTGCTCTACAAGTTGTGTTTCTTCACACTACCGTTTGGAGAGAGCACATTGGCCATTCAGAGCGGCAACTTTAGCATTCCATACAATTCCAAATACTCGAAGGAGCTGCATTCCTTAATATCGTATATGTTGGAGGTGAATCCAGACAAGAGGCCAGACATATTCCAAGTGTCATATGTTGCGTTCAGAATCTCTGGAAGAGACTGCCCTGTACAGAACCTCAATCGTATTGCAACGCCAGATATTTCTAAGCTGTCGTGTCCAAACACTGACAACACCGACAGTGGCATGCGACAAGCAGATTCCAGAAACAATGCTGGGCAAACACGGTCAGACTTGGCGACGGAAGGGACGTCGGTGGCACCGAGGCAGCGCCCCAAGAGTAACGCGGTCATGTCCAACATGACGGTGCCCGTGCAGACCACAGTCGCTCCACGCAGACGGCCCACACCCACCAACAACCGCTCAGAGAGGCCGCCATTGCAGCAACAACCACAGCAGCCACAGCAGCCGGCGTACAGCAGCCGTGTCGCGCCCCAGTCagctccctctgtctctcccatTCCCAGTCTCGTACAGCTGCAGCATCCCACGCAACAAGCCCCCTTCCCCCAGCAGCCCTTCCACGCCAGCCACGCCGGACCCCAGCTGCAGATGGCCAACGATCAGCCACCGCCAGCCCAGTCAGCTGCTTGCAACACACAACAGTGGCAGCAGCAGAGCTATGTCCAACAGCAGCAGTTACAGCAGCTGCAGCAACAGCAGctacagcagcaacaacagttgcagcagcaacaactggaGCAGCAACACATGGCCATgatgcaacagcagcagcagcagcagctacaACATCAACAACCGCAGAGGATggtgcagcagcagcagctacaGCAGTCCAGCAACTACTTCACTGCCAGCAGTTTCCACCAGGCGGCAGCACCTGCTGATATGGATGATGCGATGTTTAAAGTGCCACAGCCACCGACGTCAAAACGACAGCAAGGTGAGAAAGAAAAACTGCTTTGTGAGTCGCCCTCAATATCTCCACCCCTCGTGCGGAGACATCGCAGGAATGTCAGCGATACGGCGGCCATTACCATGAACGACTCGCAACAGAGGCACAGTGCCTTCAGGGTCTATGGTGGCGACGGTCTCGTTCCTCCAAATGATCTTTCCAAGTCGAAAAGTGCGACCGGGACACCGGCCAGCTCGCCGATGCACACACCGCAGCGCCCTCTGTCAGCAGACATGTCTGACTGGAATCCGTTTGGCGATGACAACTTTGGCACGCTGACAGAAGACAACATATTTGGGAGGGAGTTTGACAGGTTGCGGCGGGGCTCAAATAGCACAGCCAAGGCTGAGAAGACGTCCGGAGGCCACAAGCGCAGTGTATCTGATGTAACAGAGCTTCGAGATGGTTATAGCAAACTTGCGGAGGAGAATGGCAGTGGCGACACAATGAGCCCTGATGACACGTCCGTGGCACCATCAGTGACAAAACCCCCAGAGAAACCCTCTCAGCCCGACACTAGACCCGACCAGGCGAAATCTGGGTCCAAGTCACATGACCTGCTCGTTGGAACGGCGCGCTTCGTGAGGCGCACTGTCGAGAAATCTCTGTACCACCAGTTTGTGGACGCGGACAGTGACGACCACGAGAAAGTCATGTCCGTGCCCAGCAGCAACTCTCTCGCCGTCGGTCAGTCCCTCGGCGACTCCAGCTCCGAGGGTCCGGACATCGCCGAGCGGGAAAAATACCAGCAGCAACGCCGGTTTCGTGACTACCGATATCAGGAGCTGGAGGACGAATACGGCAGCAAGAAGTCGACGAAGCCCTCGCTCCAGCCCTACCAGCAGGAGGCTGTGTTTGGTGGCGGGAGTGATGTCAGCAACGGCATCGAGCCGGACAGTTCCGAGCGGTCGTACGACGACGACGGTTACGAGGAAGCCTCGCCGAAATTACCAACGCACCACATGCACTCGCTGTCACCGCCAGGCCAGCAGATGGCGCCACCCGTCGAACAGCATGACCGGATCGTCGGACATGAGTTCGGGGTGAAGCCGCTGCTGGATGATGACGAATTGTCGGACACGGAGGGTAAGCCGTCGGTGATGACAAACCCGTTCCTGACGCAAGACGAGGCACTGTCGCAGTGCTCGAGTGTCATGAGTACCGGCAGTGTCACCATGTCGCCGCAGTCATCGCTGTCACCTGTCGACGTTGCCACCAGGGACGTGTTTGGCGCGGCGCCGTTCAGGCAGAAATCGCGCAAGAAACGTGGCAGCAAACTGTTGCTGGGCAGTCCACCGCAGTCAGGACCTGTCACGCCCAGTGTGTTCACCGAGACCCGGTCCCTGTCAACCACGGGACAGGAAGTGGGTTGTCTggtggagagagggagagacgagCTG

Transcript

ENSJPOP00000000016

aggTTGTGTCATCCAGCAAATGAATGACAGACTGGGCTGTGGCTTCAGTGAATACGAAGTACTCAAGATATTCTGTGATATATGTGAGGCCACGTCTCGACTCCACCACTGCCAGACGCCAATCATCCACCGCGACCTCAAGgtagaGAATGTGCTGATGGAGAATGATGGCACATATGTACTGTGTGACTTTGGCAGTGCAACAGCAAGGTTCCTCAATCCAAAGACAAACTCAATACAACAAATAGAGGAAGAATTAAAAAGGTACACGACAGTTGCTTACCGGGCGCCAGAGATGGTTGATTTGTACAGTGGCAAGACAATCACCACAAAGGCTGACATCTGGGCTCTAGGCTGTCTGCTCTACAAGTTGTGTTTCTTCACACTACCGTTTGGAGAGAGCACATTGGCCATTCAGAGCGGCAACTTTAGCATTCCATACAATTCCAAATACTCGAAGGAGCTGCATTCCTTAATATCGTATATGTTGGAGGTGAATCCAGACAAGAGGCCAGACATATTCCAAGTGTCATATGTTGCGTTCAGAATCTCTGGAAGAGACTGCCCTGTACAGAACCTCAATCGTATTGCAACGCCAGATATTTCTAAGCTGTCGTGTCCAAACACTGACAACACCGACAGTGGCATGCGACAAGCAGATTCCAGAAACAATGCTGGGCAAACACGGTCAGACTTGGCGACGGAAGGGACGTCGGTGGCACCGAGGCAGCGCCCCAAGAGTAACGCGGTCATGTCCAACATGACGGTGCCCGTGCAGACCACAGTCGCTCCACGCAGACGGCCCACACCCACCAACAACCGCTCAGAGAGGCCGCCATTGCAGCAACAACCACAGCAGCCACAGCAGCCGGCGTACAGCAGCCGTGTCGCGCCCCAGTCagctccctctgtctctcccatTCCCAGTCTCGTACAGCTGCAGCATCCCACGCAACAAGCCCCCTTCCCCCAGCAGCCCTTCCACGCCAGCCACGCCGGACCCCAGCTGCAGATGGCCAACGATCAGCCACCGCCAGCCCAGTCAGCTGCTTGCAACACACAACAGTGGCAGCAGCAGAGCTATGTCCAACAGCAGCAGTTACAGCAGCTGCAGCAACAGCAGctacagcagcaacaacagttgcagcagcaacaactggaGCAGCAACACATGGCCATgatgcaacagcagcagcagcagcagctacaACATCAACAACCGCAGAGGATggtgcagcagcagcagctacaGCAGTCCAGCAACTACTTCACTGCCAGCAGTTTCCACCAGGCGGCAGCACCTGCTGATATGGATGATGCGATGTTTAAAGTGCCACAGCCACCGACGTCAAAACGACAGCAAGGTGAGAAAGAAAAACTGCTTTGTGAGTCGCCCTCAATATCTCCACCCCTCGTGCGGAGACATCGCAGGAATGTCAGCGATACGGCGGCCATTACCATGAACGACTCGCAACAGAGGCACAGTGCCTTCAGGGTCTATGGTGGCGACGGTCTCGTTCCTCCAAATGATCTTTCCAAGTCGAAAAGTGCGACCGGGACACCGGCCAGCTCGCCGATGCACACACCGCAGCGCCCTCTGTCAGCAGACATGTCTGACTGGAATCCGTTTGGCGATGACAACTTTGGCACGCTGACAGAAGACAACATATTTGGGAGGGAGTTTGACAGGTTGCGGCGGGGCTCAAATAGCACAGCCAAGGCTGAGAAGACGTCCGGAGGCCACAAGCGCAGTGTATCTGATGTAACAGAGCTTCGAGATGGTTATAGCAAACTTGCGGAGGAGAATGGCAGTGGCGACACAATGAGCCCTGATGACACGTCCGTGGCACCATCAGTGACAAAACCCCCAGAGAAACCCTCTCAGCCCGACACTAGACCCGACCAGGCGAAATCTGGGTCCAAGTCACATGACCTGCTCGTTGGAACGGCGCGCTTCGTGAGGCGCACTGTCGAGAAATCTCTGTACCACCAGTTTGTGGACGCGGACAGTGACGACCACGAGAAAGTCATGTCCGTGCCCAGCAGCAACTCTCTCGCCGTCGGTCAGTCCCTCGGCGACTCCAGCTCCGAGGGTCCGGACATCGCCGAGCGGGAAAAATACCAGCAGCAACGCCGGTTTCGTGACTACCGATATCAGGAGCTGGAGGACGAATACGGCAGCAAGAAGTCGACGAAGCCCTCGCTCCAGCCCTACCAGCAGGAGGCTGTGTTTGGTGGCGGGAGTGATGTCAGCAACGGCATCGAGCCGGACAGTTCCGAGCGGTCGTACGACGACGACGGTTACGAGGAAGCCTCGCCGAAATTACCAACGCACCACATGCACTCGCTGTCACCGCCAGGCCAGCAGATGGCGCCACCCGTCGAACAGCATGACCGGATCGTCGGACATGAGTTCGGGGTGAAGCCGCTGCTGGATGATGACGAATTGTCGGACACGGAGGGTAAGCCGTCGGTGATGACAAACCCGTTCCTGACGCAAGACGAGGCACTGTCGCAGTGCTCGAGTGTCATGAGTACCGGCAGTGTCACCATGTCGCCGCAGTCATCGCTGTCACCTGTCGACGTTGCCACCAGGGACGTGTTTGGCGCGGCGCCGTTCAGGCAGAAATCGCGCAAGAAACGTGGCAGCAAACTGTTGCTGGGCAGTCCACCGCAGTCAGGACCTGTCACGCCCAGTGTGTTCACCGAGACCCGGTCCCTGTCAACCACGGGACAGGAAGTGGGTTGTCTggtggagagagggagagacgagCTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04857	CAF1	CAF1 family ribonuclease	Family	Interproscan
PF08675	RNA_bind	RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006941	Family	Ribonuclease CAF1	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014789	Domain	Poly(A)-specific ribonuclease, RNA-binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051181	Family	CAF1 family poly(A)-specific ribonucleases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-