Gene detail

Detailed information of CsqKR_Scaf99_55.6 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf99_55.6	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	chr9	9652146	9669113	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf99_55.6

ATGAGGAAGAAAAAAGGTGGTAAGAAGCAGGCAGGGAAACTTCGGGCATTGTCTGTGAAAGTCCATGCTTCCAAACCAGGAAAAGAGAAACATGATAGTCAGAAAAATATCATTAAAGATTCTAGCTTGAAGAAAAAGATAATACAGTTTCTCAAAGCAAAGCACAATGCACAGAAAACCATAGCGATAGCTCGTGGTGTTGGCTATACTACAGCAAAAGAGGTTAACCCAACTTTATACTCTCTGGCAAACAAGAAATGTGTTACCAAGGTAACAGAACAGCCCCCTACTTGGCAGTTAGATAACCAACATTTTCATTCCTTTGAGATAAATGATAATGATGAAGAAATGCAAGAAGCTTGTTTCAAGTCCAAAAAATCTGGTAAAGAGATAGGTTCCACAAGTCAGCAGGTTTCAGATCAGAGTTCTCCTGAACAGAATTTGAGACAAGTTAATTTGTTTGGTACTCATGGAGAAAGTCTCTTCGACAGTAATGTTGTGGAACAGAAAGATGACTCCGAAATTGGAAATTTGGAACCAGATGGAAGCGAAGTGGAAGCAAGTCTGGAGAAGTTTCACTTAGAGGGTGAGAATGAGCAGGATCTTGTCAGTGATGATGATGATGAAGAAGTGACACTGCAAGCCAGGCTGATAGATGTTATGGCGTATGGTCATGGGGATGTGGACAGCTCTTTGTATGAAAGTTCATCTGATGTTGACTTTGTCACTAACAAAAGCTATCAGGAGGAATTGTTTGGAAAGCAGCTGTCCAGTTCAGTGAATTTGTCATTTGAGGACATGGTTTTACAAACACTGGCTAACCAATTCTTAGCCACAGCAGCAGCTTTTGTGTTAGCTAATAAAATTCAAGACGCTTCCAAAGAAGATGTAGAAACTGCTTTGAGACATTTGAAAGAAAAGAATTTGGTCAGTTGCAAGGGTATTGTATGGGAGGTCACAAAGACAGGTGAAGATTATTTAAGGTCTAAACAGTTAATTTCTGACAGTAAATCACCATCTATGAATGTTAACAAGAACAATCTGATCCCACGTAATTTGCCATCAGAAGATGGACGAGGAGTTCCTTTATCACCATCTGAACTTGTCACCTCAGGTGCAATGTTTTGCAAAACAAGTTTGCTTCCTCCAGTTCCACGGGGAAGAGGACTTAATTTACAGAAGGCCATCGAAATTAAATATAATTTGTCTATGGGAAGAGGTCACGGTGTGCTCGGTGTGTCAGGAAACAGCTTAGCACCTCCATTTCTTAAGTACGGTGGATCACTGGCAGTCAGAAGCCAGAGATCAGCAGAAGAGAACAAGAGTTCATCTGGGATCCAAACTTCAAGCTTGAGTGACATCATTTCTGATTCAAGTTTTCATTCAGGACCATCAATGGTTAAACCAGTAGCTCAAAGTGGTTTTCATATTCCTCCTTCGCCTGTAGCTATTGTGTGTCAGAGCAGCAGCAGTGTGAATCCTCCACACGTAGCGACAGCATCCTTCATAAGATCATCAGCAACACCATCTTTTAGTACATCTGCAGTGAGCAGTCCCATGCAGCTAACTGCTTCAGGTTCTAACAGAGAACCAGCCAGAGGAGCAGCTAACATAGGTATCAGTTCCGAAAGCTTTGCTGCACTGAACAAAAATCCTGTCAGTGCCCTGATGGAATATGCACAGTCAAGACACTTAGCAGCTAGCATTGATGTGCTGAGTCAGAGAGGACCTCCACATAAACCTAGTTTTGAAATTGCTGCTTTTGTCGGAAATCGTCAGTTTCCAAGTGTTGTTTGTAACAACAAGAAAACTGGCCGCAAAGATGCTGCTGATGTGGCCATGAGAACTCTTATAGCAGAAGGAGCATACAAAGTGACGAGTAACTTGCAGTCACTTGTGGATGTACCTTCAAAAAACATGACCCACTTTGATAAAATGGCTGGGCTTGTACATCAGGCCTTCAATGCCTTGATAGCATCCATTCCTGAAGCTTTATCTGGTCGAAAAATCATTGCTGGACTCGTGATGAAGAGGAATGAAAACGATGTTGGTGTTGTCATCAGCATTGGGTCAGGTAACCGGTGCATCACAGGACAACAGCTGAGTCTGGAAGGAAACACGATAAATGATTCTCATGCTGAAATCATTACACGAAGAGGATTCATGAGATTTCTTTACAAGCAGCTCGAATCTTATGACCCGTCACAACCACACGGTTTATTTGAGAAAGGGTCTGGAGGAAAATTACGTATTCGACCTAATATAACATTCCACCTGTACATCTCAACAGCACCTTGCGGAGATGGTGCATTGTTTTCACCCAGAGATGCAGGATCAAACAATGCACCATTGTTCACTTTGGACAGTCAAAAACATCACCCTACTTTTACCAGCACTGTCCAGGGACTTTTAAGAACAAAGATGGAAGGAGGTGAAGGCACGATTCCAATCGAGTCAGATTTCACAGGGCAGACATTTGATGGTATTGTCAGGGGCGAGAGACTGCGCACCATGTCCTGCACTGACAAAATCTGCCGCTGGAATGTTGTTGGCATGCAGGGAGCTCTCTTGTCAAACTTTCTTGAACCAATTTATTTGGATTCTCTCACTTTAGGATTCCTTTATGATCATGGTCACTTGGCAAGAGCTGTATGTTGCCGTGTCAACAGAACAGGCCAGCCAATAGATGAGATTCTTCCAAAAGGATACCACTTGAACCACCCTTGGCTGGGTCGTGTGACAGCATGTGACCCTTCCAGAGAGACACAGAAAACAAAGAATTTGAGTATAAATTGGAGTTTCGGAGACCAGCACCCTGAAGTTGTTGATGGACCTCTTGGTCTTTGTCATACAGGAATTGAGAAGAAGATTTTTTCCCGTATGACAAAGAAAAACATGTATGAAAATTTCAAGAAGATATGTGGAAGGTTCAACCATAAAGACCTTTCCCAGGCACCTAATTACTACAAAGCCAAGATGGCTGCCAAAGACTTTCAAGCAGCCAAGCAGGCTTTTTACAAAAAACTCAAAGAAAACAATTACGGACCTTGGGTTTCGAAACCAGTTGAAGAAGAAATGTTCTCTTAG

Transcript

CsqKR_Scaf99_55.6

GTGACCTAGATTAAGATGGCTTCCATGCGAAATAATTGGTGATTTCATTTTTAAACATAAAAATAATATAATGAGGAAGAAAAAAGGTGGTAAGAAGCAGGCAGGGAAACTTCGGGCATTGTCTGTGAAAGTCCATGCTTCCAAACCAGGAAAAGAGAAACATGATAGTCAGAAAAATATCATTAAAGATTCTAGCTTGAAGAAAAAGATAATACAGTTTCTCAAAGCAAAGCACAATGCACAGAAAACCATAGCGATAGCTCGTGGTGTTGGCTATACTACAGCAAAAGAGGTTAACCCAACTTTATACTCTCTGGCAAACAAGAAATGTGTTACCAAGGTAACAGAACAGCCCCCTACTTGGCAGTTAGATAACCAACATTTTCATTCCTTTGAGATAAATGATAATGATGAAGAAATGCAAGAAGCTTGTTTCAAGTCCAAAAAATCTGGTAAAGAGATAGGTTCCACAAGTCAGCAGGTTTCAGATCAGAGTTCTCCTGAACAGAATTTGAGACAAGTTAATTTGTTTGGTACTCATGGAGAAAGTCTCTTCGACAGTAATGTTGTGGAACAGAAAGATGACTCCGAAATTGGAAATTTGGAACCAGATGGAAGCGAAGTGGAAGCAAGTCTGGAGAAGTTTCACTTAGAGGGTGAGAATGAGCAGGATCTTGTCAGTGATGATGATGATGAAGAAGTGACACTGCAAGCCAGGCTGATAGATGTTATGGCGTATGGTCATGGGGATGTGGACAGCTCTTTGTATGAAAGTTCATCTGATGTTGACTTTGTCACTAACAAAAGCTATCAGGAGGAATTGTTTGGAAAGCAGCTGTCCAGTTCAGTGAATTTGTCATTTGAGGACATGGTTTTACAAACACTGGCTAACCAATTCTTAGCCACAGCAGCAGCTTTTGTGTTAGCTAATAAAATTCAAGACGCTTCCAAAGAAGATGTAGAAACTGCTTTGAGACATTTGAAAGAAAAGAATTTGGTCAGTTGCAAGGGTATTGTATGGGAGGTCACAAAGACAGGTGAAGATTATTTAAGGTCTAAACAGTTAATTTCTGACAGTAAATCACCATCTATGAATGTTAACAAGAACAATCTGATCCCACGTAATTTGCCATCAGAAGATGGACGAGGAGTTCCTTTATCACCATCTGAACTTGTCACCTCAGGTGCAATGTTTTGCAAAACAAGTTTGCTTCCTCCAGTTCCACGGGGAAGAGGACTTAATTTACAGAAGGCCATCGAAATTAAATATAATTTGTCTATGGGAAGAGGTCACGGTGTGCTCGGTGTGTCAGGAAACAGCTTAGCACCTCCATTTCTTAAGTACGGTGGATCACTGGCAGTCAGAAGCCAGAGATCAGCAGAAGAGAACAAGAGTTCATCTGGGATCCAAACTTCAAGCTTGAGTGACATCATTTCTGATTCAAGTTTTCATTCAGGACCATCAATGGTTAAACCAGTAGCTCAAAGTGGTTTTCATATTCCTCCTTCGCCTGTAGCTATTGTGTGTCAGAGCAGCAGCAGTGTGAATCCTCCACACGTAGCGACAGCATCCTTCATAAGATCATCAGCAACACCATCTTTTAGTACATCTGCAGTGAGCAGTCCCATGCAGCTAACTGCTTCAGGTTCTAACAGAGAACCAGCCAGAGGAGCAGCTAACATAGGTATCAGTTCCGAAAGCTTTGCTGCACTGAACAAAAATCCTGTCAGTGCCCTGATGGAATATGCACAGTCAAGACACTTAGCAGCTAGCATTGATGTGCTGAGTCAGAGAGGACCTCCACATAAACCTAGTTTTGAAATTGCTGCTTTTGTCGGAAATCGTCAGTTTCCAAGTGTTGTTTGTAACAACAAGAAAACTGGCCGCAAAGATGCTGCTGATGTGGCCATGAGAACTCTTATAGCAGAAGGAGCATACAAAGTGACGAGTAACTTGCAGTCACTTGTGGATGTACCTTCAAAAAACATGACCCACTTTGATAAAATGGCTGGGCTTGTACATCAGGCCTTCAATGCCTTGATAGCATCCATTCCTGAAGCTTTATCTGGTCGAAAAATCATTGCTGGACTCGTGATGAAGAGGAATGAAAACGATGTTGGTGTTGTCATCAGCATTGGGTCAGGTAACCGGTGCATCACAGGACAACAGCTGAGTCTGGAAGGAAACACGATAAATGATTCTCATGCTGAAATCATTACACGAAGAGGATTCATGAGATTTCTTTACAAGCAGCTCGAATCTTATGACCCGTCACAACCACACGGTTTATTTGAGAAAGGGTCTGGAGGAAAATTACGTATTCGACCTAATATAACATTCCACCTGTACATCTCAACAGCACCTTGCGGAGATGGTGCATTGTTTTCACCCAGAGATGCAGGATCAAACAATGCACCATTGTTCACTTTGGACAGTCAAAAACATCACCCTACTTTTACCAGCACTGTCCAGGGACTTTTAAGAACAAAGATGGAAGGAGGTGAAGGCACGATTCCAATCGAGTCAGATTTCACAGGGCAGACATTTGATGGTATTGTCAGGGGCGAGAGACTGCGCACCATGTCCTGCACTGACAAAATCTGCCGCTGGAATGTTGTTGGCATGCAGGGAGCTCTCTTGTCAAACTTTCTTGAACCAATTTATTTGGATTCTCTCACTTTAGGATTCCTTTATGATCATGGTCACTTGGCAAGAGCTGTATGTTGCCGTGTCAACAGAACAGGCCAGCCAATAGATGAGATTCTTCCAAAAGGATACCACTTGAACCACCCTTGGCTGGGTCGTGTGACAGCATGTGACCCTTCCAGAGAGACACAGAAAACAAAGAATTTGAGTATAAATTGGAGTTTCGGAGACCAGCACCCTGAAGTTGTTGATGGACCTCTTGGTCTTTGTCATACAGGAATTGAGAAGAAGATTTTTTCCCGTATGACAAAGAAAAACATGTATGAAAATTTCAAGAAGATATGTGGAAGGTTCAACCATAAAGACCTTTCCCAGGCACCTAATTACTACAAAGCCAAGATGGCTGCCAAAGACTTTCAAGCAGCCAAGCAGGCTTTTTACAAAAAACTCAAAGAAAACAATTACGGACCTTGGGTTTCGAAACCAGTTGAAGAAGAAATGTTCTCTTAGTGTTTTTCAGTGGAACACCAAAAGAACATGGATAAAGAAGAGTGTATTGACAGTGATAGCAAGAACAAACTTAATGTAACAGTTTTCAAAGGATTTTTCCCATTGCTGCGGTACATTGTTGAACCAGATGGATCTAACATATTTCTAGGGTCTGTAGCATGTAATTACAGTGATGTTATTTCACATGAAAAATTTATACTCAGTGAGGCTTTGAAGTTTTATAGTGTATATTTACACATTTTATTAGCATCATTATATCATTTTATTTTTTTTTATATATTATTATTATTAGCAACTTACTATGCTTATGTAATAGTTAACAGTAAACATTTTGTGAAGATAATATTTTAGGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF02137	A_deamin	Adenosine-deaminase (editase) domain	Family	Interproscan
PF02295	z-alpha	Adenosine deaminase z-alpha domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002466	Domain	Adenosine deaminase/editase	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR042371	Domain	Z-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003726	Molecular Function	double-stranded RNA adenosine deaminase activity	Interproscan
GO:0004000	Molecular Function	adenosine deaminase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006382	Biological Process	adenosine to inosine editing	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008251	Molecular Function	tRNA-specific adenosine deaminase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf99_55.6 global RNA-seq network