Gene detail

Detailed information of CsqKR_Scaf99_44.23 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf99_44.23	ATP-DEPENDENT RNA HELICASE	chr9	10812203	10826906	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf99_44.23

ATGGAAGAACTTCAGAAACTTGAATATCTATCTTTAGTTTCTAAAGTATGTACAGAACTGGAGAATCATCTTGGTATTAACGATAAAGATTTAGCTGAATATGTTATTGACCTTGCTGAAACAAATGACACGTTTGATAAACTTAAAAAGGCACTGGAAGAAAGAGATGCTCAGTTCAGTGATTCCCTTGTCGCAAATCTTTTGCGTCTCATTAAAAGAATGAAACCGAAGCCGATTGCTGTGAACAACAAAGCCTCGGACAACAAAGAAAATGAAGTGAAAAAGAGTGATGTACAAATTAACAAAACCTTGTATCCTGGACTTGCCTTGCCAAATGATCCTCAAGTTAGAAGCTTGTTACACGAAGAAGACGTGAAAACTGAGAAACCGACAACAGAGAATGATTCAGAAGTAGTAGATTCAATGATGGGTGAACTGGAAGCTTTGATGGGAAAATCAAAACAGAGCAGTGACACTAAACATTCCGATAAGAAAACAAAACACAGAAGTAGAAGCAGAAGTCGAGAAAAGAAAAAAAAAAGAAGATCCCGGAGCAATTCCCGAGATCGTTCGAGGCATCGCAGTCGCTCCAGAGAACGCCGCAGATCTAGAAGTGGATCTAGAGACAGAAAGAGACATCGATCGCGAAGCAGATCACGAGACAGGAGGAAAGATCGCCATAGAGACAAGCGCAGTCCTGACGCTGATAGAGATTATCGCCGTAGTAAGAAATCACACGACAAAGAAAAGGACAGGTCAAAAGATAAATACAATGATATTCCTATGGAGCCATCAGTTGGTGATATATACACAGGTAAAGTGACCACCATTATGCAGTTTGGCTGTTTTGTCCAACTGGAAGGACTGAGGAAACGATGGGAAGGCTTGGTCCATATATCCCAGTTACGACGAGAAGGCAGGGTCACCAATGTCACTGATGTTGTGAGCCGAGGTCAGAAAGTGTTTGCCAAGGTGTTGTCATTCACTGGACATAAAACCAGCTTGTCTATGAAGGATGTGGATCAGGAAACTGGTGAAGATTTGAACCCAGGGAAGACCAAGTCTCTCAAAGGCGATGATGAACACACTGAGATGGAAGCACGGAATCCTGACAGGCCATCCACATTGCCGTTGCTTGGTGTTCCTGAACCAGAGACAACGTCAAAACAGAGGACGTTCAAAAGAATCTCCTCTCCCGAACGCTGGGAAATCAAACAGATGATAGCTGCTAACGTCATAGACAAGTCTCAGCTGCCAGACTTCGATGAAGAAACAGGACTGCTACCTAAAGAAGATGATTCAGATGAAGATGTGGAGGTGACACTGGTGGAAGAGGAGCCACCTTTCCTTCAGGGTCACGGCCGACACTGGGTTGACCTGAGTCCAGTTAAAATTGTTAAAAATCCAGATGGATCTCTGGCCCAGGCAGCCATGATGCAGAGTGCTCTTCAGAAAGAGAGGAGAGAAATGAAACAGGCTCAGAGAGAGGCTGAGATGGACTCTGTCCCAGCTGGACTCAATACTGATTGGATTGATCCAATGCCTACTTCTGATGGTAGAAAACTGGCTGCCAATATGCGTGGTGTAGGCATGACTCCACAAGAGATTCCGGAATGGAAAAAACATATAAGTGGAGGGGCCAAAGCTTCTTACGGAAAGAAAGAGAAAAAGTCACTTCTAGAACAGAGACAGAGTCTACCCATATTTAAACTGAAAGATGAACTTGTTAAGGCTGTTAATGATAATCAGATACTTATAGTAATTGGAGAGACGGGATCAGGGAAGACAACTCAGATCACACAGTACCTTGCTGAGGCTGGGTACATCACACGGGGAAAGATCGGTTGTACCCAGCCTCGACGAGTGGCAGCCATGTCTGTTGCAAAAAGAGTGTCAGAAGAATACGGTTGCAGATTAGGTCAAGAAATTGGTTACACAATTCGTTTTGAGGACTGTACAAGTCCTGAGACGAAGATCAAATACATGACAGACGGAATGATGCTGAGAGAGTGTCTGATTGATCCAGACTTGATGCAGTACGCCATCATCATGCTGGACGAAGCCCACGAGAGAACCATCCACACTGACGTCTTATTTGGACTTCTAAAAGAGGCTATAAAGAAGAGACCTGAACTAAAATTAATTGTGACCTCAGCAACCCTTGATGCAGTAAAGTTCTCACAGTACTTCTTTGAATCTCCAATTTTCACAATACCTGGACGAGCGTACCCTGTTGAAATTTTATACACCAAGGAAGCAGAGACAGATTATCTTGATGCTTCACTGATAACTGTCATGCAGATTCACTTGACTGAACCTCCAGGTGACATTTTGCTGTTCCTCACAGGTCAGGAGGAGATTGACTCAGCCTGTGAAATCCTGTATGAGAGGATGAAAGCTCTGGGTCCTGAAGTACCAGAACTCTTGATTCTGCCCGTGTACAGTGCTCTGCCCAGCGAAATGCAGACTAGAATCTTTGATCCTGCTCCTCCAGGATCCAGAAAGGTTGTCATAGCAACAAATATTGCCGAAACATCTCTGACTATTGATGGTATTTTCTATGTGGTGGATCCAGGCTTTGTCAAACAGAAGGTGTACAACTCCAAAACAGGAATGGACCAGCTTATTGTTACTCCTATATCTCAGGCACAAGCCAAACAGAGAGCAGGTCGGGCTGGGAGAACAGGACCAGGGAAATGTTATCGTCTGTACACTGAGAGAGCTTATCGAGATGAAATGTTGCCTAGCAACGTGCCCGAAATTCAGCGTACCAACCTGGCCAGTACCGTGCTGTCTCTGAAAGCCATGGGCATCAACGATCTCCTCTCCTTCGACTTCATGGATGCTCCACCAATGCAGACCCTCATTTCAGCCATGGAACAGCTGCATGCTCTTAGTGCCCTAGATGATGAAGGTTTGCTCACTCGTCTTGGAAGAAGGACACTTCTCAACTTATAG

Transcript

CsqKR_Scaf99_44.23

GGATAATTTCCGGTGAACAAAAGATGAACGTATAAGTACAGTTATTTGTCTTTATTATAAAATAATTAAATCATGGAAGAACTTCAGAAACTTGAATATCTATCTTTAGTTTCTAAAGTATGTACAGAACTGGAGAATCATCTTGGTATTAACGATAAAGATTTAGCTGAATATGTTATTGACCTTGCTGAAACAAATGACACGTTTGATAAACTTAAAAAGGCACTGGAAGAAAGAGATGCTCAGTTCAGTGATTCCCTTGTCGCAAATCTTTTGCGTCTCATTAAAAGAATGAAACCGAAGCCGATTGCTGTGAACAACAAAGCCTCGGACAACAAAGAAAATGAAGTGAAAAAGAGTGATGTACAAATTAACAAAACCTTGTATCCTGGACTTGCCTTGCCAAATGATCCTCAAGTTAGAAGCTTGTTACACGAAGAAGACGTGAAAACTGAGAAACCGACAACAGAGAATGATTCAGAAGTAGTAGATTCAATGATGGGTGAACTGGAAGCTTTGATGGGAAAATCAAAACAGAGCAGTGACACTAAACATTCCGATAAGAAAACAAAACACAGAAGTAGAAGCAGAAGTCGAGAAAAGAAAAAAAAAAGAAGATCCCGGAGCAATTCCCGAGATCGTTCGAGGCATCGCAGTCGCTCCAGAGAACGCCGCAGATCTAGAAGTGGATCTAGAGACAGAAAGAGACATCGATCGCGAAGCAGATCACGAGACAGGAGGAAAGATCGCCATAGAGACAAGCGCAGTCCTGACGCTGATAGAGATTATCGCCGTAGTAAGAAATCACACGACAAAGAAAAGGACAGGTCAAAAGATAAATACAATGATATTCCTATGGAGCCATCAGTTGGTGATATATACACAGGTAAAGTGACCACCATTATGCAGTTTGGCTGTTTTGTCCAACTGGAAGGACTGAGGAAACGATGGGAAGGCTTGGTCCATATATCCCAGTTACGACGAGAAGGCAGGGTCACCAATGTCACTGATGTTGTGAGCCGAGGTCAGAAAGTGTTTGCCAAGGTGTTGTCATTCACTGGACATAAAACCAGCTTGTCTATGAAGGATGTGGATCAGGAAACTGGTGAAGATTTGAACCCAGGGAAGACCAAGTCTCTCAAAGGCGATGATGAACACACTGAGATGGAAGCACGGAATCCTGACAGGCCATCCACATTGCCGTTGCTTGGTGTTCCTGAACCAGAGACAACGTCAAAACAGAGGACGTTCAAAAGAATCTCCTCTCCCGAACGCTGGGAAATCAAACAGATGATAGCTGCTAACGTCATAGACAAGTCTCAGCTGCCAGACTTCGATGAAGAAACAGGACTGCTACCTAAAGAAGATGATTCAGATGAAGATGTGGAGGTGACACTGGTGGAAGAGGAGCCACCTTTCCTTCAGGGTCACGGCCGACACTGGGTTGACCTGAGTCCAGTTAAAATTGTTAAAAATCCAGATGGATCTCTGGCCCAGGCAGCCATGATGCAGAGTGCTCTTCAGAAAGAGAGGAGAGAAATGAAACAGGCTCAGAGAGAGGCTGAGATGGACTCTGTCCCAGCTGGACTCAATACTGATTGGATTGATCCAATGCCTACTTCTGATGGTAGAAAACTGGCTGCCAATATGCGTGGTGTAGGCATGACTCCACAAGAGATTCCGGAATGGAAAAAACATATAAGTGGAGGGGCCAAAGCTTCTTACGGAAAGAAAGAGAAAAAGTCACTTCTAGAACAGAGACAGAGTCTACCCATATTTAAACTGAAAGATGAACTTGTTAAGGCTGTTAATGATAATCAGATACTTATAGTAATTGGAGAGACGGGATCAGGGAAGACAACTCAGATCACACAGTACCTTGCTGAGGCTGGGTACATCACACGGGGAAAGATCGGTTGTACCCAGCCTCGACGAGTGGCAGCCATGTCTGTTGCAAAAAGAGTGTCAGAAGAATACGGTTGCAGATTAGGTCAAGAAATTGGTTACACAATTCGTTTTGAGGACTGTACAAGTCCTGAGACGAAGATCAAATACATGACAGACGGAATGATGCTGAGAGAGTGTCTGATTGATCCAGACTTGATGCAGTACGCCATCATCATGCTGGACGAAGCCCACGAGAGAACCATCCACACTGACGTCTTATTTGGACTTCTAAAAGAGGCTATAAAGAAGAGACCTGAACTAAAATTAATTGTGACCTCAGCAACCCTTGATGCAGTAAAGTTCTCACAGTACTTCTTTGAATCTCCAATTTTCACAATACCTGGACGAGCGTACCCTGTTGAAATTTTATACACCAAGGAAGCAGAGACAGATTATCTTGATGCTTCACTGATAACTGTCATGCAGATTCACTTGACTGAACCTCCAGGTGACATTTTGCTGTTCCTCACAGGTCAGGAGGAGATTGACTCAGCCTGTGAAATCCTGTATGAGAGGATGAAAGCTCTGGGTCCTGAAGTACCAGAACTCTTGATTCTGCCCGTGTACAGTGCTCTGCCCAGCGAAATGCAGACTAGAATCTTTGATCCTGCTCCTCCAGGATCCAGAAAGGTTGTCATAGCAACAAATATTGCCGAAACATCTCTGACTATTGATGGTATTTTCTATGTGGTGGATCCAGGCTTTGTCAAACAGAAGGTGTACAACTCCAAAACAGGAATGGACCAGCTTATTGTTACTCCTATATCTCAGGCACAAGCCAAACAGAGAGCAGGTCGGGCTGGGAGAACAGGACCAGGGAAATGTTATCGTCTGTACACTGAGAGAGCTTATCGAGATGAAATGTTGCCTAGCAACGTGCCCGAAATTCAGCGTACCAACCTGGCCAGTACCGTGCTGTCTCTGAAAGCCATGGGCATCAACGATCTCCTCTCCTTCGACTTCATGGATGCTCCACCAATGCAGACCCTCATTTCAGCCATGGAACAGCTGCATGCTCTTAGTGCCCTAGATGATGAAGGTTTGCTCACTCGTCTTGGAAGAAGGACACTTCTCAACTTATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00575	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042035	Homologous_superfamily	DEAH helicase, winged-helix domain	Interproscan
IPR044762	Domain	DHX8/ Prp22, DEXH-box helicase domain	Interproscan
IPR049588	Domain	DHX8, GH2-like domain	Interproscan
IPR049621	Domain	DHX8 helicase, S1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000390	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf99_44.23 global RNA-seq network