Gene detail

Detailed information of CsqKR_Scaf99_31.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf99_31.7	SIALATE O-ACETYLESTERASE	chr9	12039899	12048800	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf99_31.7

GTTCGCAGTTTGAGATCAAGTGGAAGAAGGTTTTATGCTGATTTTCTGGATGAGACCGAAGAGCCAGTGCTTAACAGCATAAATCAGATAAATTTGTTGGGTCGTTTGGGACGAGATGCAGAAGTGAGGGGTACTGAAGATCACCCAGTTGTTGTGTTCTCCATGGCAACCAATACAGTTTATCGAAAAGATGGTGAGACTGTGTCACGTGTTGACTGGCACAGAATCAGTGTATTTAAACCAGGTCTGAGAGAGAAATTAGCTGCACACCTCAAGAAAGGCGACAGAGTGTTTGTCACTGGGACTGTCAGGTATGATGAATACAGAGACTCAAATGAAAACTTACAGAGGACAACAACAGTGCTAGCAAATGGAAGGAAAAAATTCAGTTTTGCTTCGTATTACAGCGATCACATGGTGTTGCAAAAGGCTCCGGCATCAGCCGTTGTCTGGGGTTACGGGGTCAGTATCGGTGATCCGGTTAATGTCACTGTCAGTGGTATTGGCCCCGTGTACACGTCAGTGACAGAGGGTCCAGTGCCAGGGCAGCCGATATGGTTCGCGAAGCTTCCGCCAGTGACGGCTGGAGGACCTCACACCATCACCGCTGTCACCTCCGTCAACCAAGTCAGCATCAGCGACGTTCTGTTTGGCGATGTCTGGCTTTGTTCAGGCCAGAGCAATATGCAGTTTACACTGGATCTGGTTTTCAATGCTTCGAGCGAGCTGGAGGATGTTTCCAGTTACAAAAATATTCGTGTGTTTGCCTTGAAGATGAAAGGAAGCGGGACACCAGAATACGACACTAATGACATAGCAGAATCCTGGTCCCTACCAGCAAACTATACGATTGGTGAACATTCATGGAAGTATTTCTCAGCTGTGTGTTGGTTGTATGGAAAATATTTGTCAGGTCATTTGAATTATCCAATCGGATTGATTGACACTTCATTTGGCGGCACTCGAGTGGAGGCGTGGTCATCACCAGATGCTCTGGCCAAATGTGGCTTAAAACCAGAGAGAGGATTAGAAAAGCTCAACATTTCTGATGTGAATCCAAATTCGGCCACCGTTTTGTGGAATTCTATGATACATCCATTGCTCAATATGTCGATTTATGGAGCTATATGGTATCAAGGTAAAGAGAATGAAAATTACATTAAGTTAATGAACGAAGATGATGAAACGATTCGAGTTACGGAGGGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGCTAAATACATTTTGGGAGTCGAACGCTTTTCCTCCGAAAGGATTTCCCGACACGATGGATGTCTATAACTGTACGTTTCCCGCAATGATCAACGACTGGAGAAAGAAGTTTCACGAGGGGACCGCTGGACAGACGGATGAAGATTTTCCTTTCGGATTTGTCCAGTTAGCTCCATATAGGAACGACTCAGCAATATCGTCTGGTTTCCCAGACATCAGATGGCACCAGACGGCAGACGAGGGCACCGTGCCAAACGACAAAATGAAGAATGTCTTCATGGCTGTGGCAGTCGACTTGCCTGACTATACTTCTCCTTTCTCAGGAATTCACCCACGTGACAAACAGGATGTGGCTAAGCGTTTGTTCCTGTCCGGTTTGGCGGTAGCCTACAACGAAACTGAGGTTGTTTATCAGGGGCCATTTCCAGACCTTTTCATTGTGGAACTGTTCAACCGATCAATTAAGATATTTTATAATGGTAACGGAAGCGTATTGAATATTAAATCGGTGGATGGATTTGAGATTTGTTGTTTCGACCAAAAGAAAGCCACGGACGACTGCCACTCGCCAACAGCCACTTGGCATTCAGTAACGATAACCTCTCACGACACTAACTCTCTCACTTTCTCGTATAACAACGAGTGCCCGGATGTGTTGCCAGGCGCTGTGAGATACGCTTGGCGGGAATCGCCGTGTCCTTTCAAGGCATGCGCAGTCTACGATGTTGTCTCAGAATTACCTGGACCACCATTCATAAAATACTTGATGGACGTCAAGTATGACGTGAAATATAACGTCAAATGGGTGGATTAA

Transcript

CsqKR_Scaf99_31.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00436	SSB	Single-strand binding protein family	Domain	Interproscan
PF03629	SASA	Carbohydrate esterase, sialic acid-specific acetylesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000424	Family	Primosome PriB/single-strand DNA-binding	Interproscan
IPR005181	Domain	Sialate O-acetylesterase domain	Interproscan
IPR011344	Family	Single-stranded DNA-binding protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR039329	Family	Sialate O-acetylesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22901	SIALATE O-ACETYLESTERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001681	Molecular Function	sialate O-acetylesterase activity	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf99_31.7 global RNA-seq network