Gene detail

Detailed information of CsqKR_Scaf99_30.32 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf99_30.32	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	chr9	12165026	12170867	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf99_30.32

CCGCGATGGTTGACCAAGAAGGGAAATCTTGTTTTCCATTGTTTTTAATTCATTATTACGTTTTGTTGTATGATTTACAACCGTGAAAACATTACAGATGTCTCAGAAATTAGACGGACATGCAGTGTCGCGGCGAAAAGCTTTAAAAGTGGCCGTAGCAGCACTCTGTTCTGAAGCTGGTTTTGGTCAAGCTGAGAATGCAGTGCTTGAAACTTTGACAGAGATGCTTCAAAGTTGTGTTAATGTGCAGTCCATTCCTGCCTACGCAAAAAGACCAAACAAAACTGTTTTTATTCCTCCTCCAATGAGTACACCCACACCCAATCCCAGAACACTCCAGACAGCAGACAAGATGCCACACCCATCACATACTCACAAGGAGCCGCTCAATGAGTATCAACATGTCCGAGAGAAAGCAGCATCACAAAAACGTGATGTGGAGAGAGCTTTGACTAGATTCATTGCAAAAACAGGAGAAACACAGTCATTGTTTAAAGATGACATCAACACATTCCCATTAATAGCTATCAAGCCTGTTCCTCTTCCTTATCTCAATGCTCTTCTGCCAAAAGATCAAGATCTAGATTCTCAGGAACCCAAAGAACTGGAGGAACCGGTAACTAAACGACCCAAAGATACAGCTCCACAAACAACAGACTCTAAAACTGCTCTCAACTCGCAGAATGGAGGCACAGATCTCCAGTCCTCCCAGACTTTACTTCCTCAAGACTCACAAGACTCTGAGGCTATAGACAATCCTTACTTAAGACCAGTTCGAATGCCAAAGAAAAGAAAAAGATGAAAGAAACAAAAGTTTTTTTTATTATATGCTTTTGTTACGTTGGGATTAATTTTCAAAAATTATCAGAGAAAAGAAAATTTTGAAAAACGAAAACAGTTTTTAGGTGCTTCTCTTTCTTGGAATCATTGTTCAACAGATGTTTAAGAAAGTCATCAGCTGTGTTAAGGTTTTGCCAGTTGGTTTACTTTGTTAAATGTGATAGGTAATAAAACTGACAATGGTTACTATCTTGGAGCAAAAGAAATGGAGTATTATGATGGGCCCACCTTTGATTGGAATTTTTATTCTCAGATCAGTTATAACACCAGACACTTAGAAAAAAGTTTTCTTTCAAATATATAATTATGCAGGGATTGTTTGTTTTTTTAAATAATGTTTTCATTATTCATCAAGTGATTTCTAACATCCAGTAGTTTATTTAATACTCGTGTATTTTCTGTAAAGCGTCACACTCTTGGTGTCTTCAGAACTGACTTTTTATATTCATTTAAAATGTTTAGATATAACATCTATTTACTAAACCTCTTTTACCATTAATTTAACATCCATCTATTGTCTTTACACAGTAATGCCATTACTTTTTCATTCATATTTATACCTTCTCAGGACTTAGTACGCACCAGTGACTGTTTTGTTAACCAGTGTTGTTCAGGACTCATTTGTTGTTGATTCTTCAGGGCAGTTATCCATTCATACTCATTGAACAATTCAATTACAGAACATTCCTTTGATTGCACTGGTTAATCCTAACAATAAATTCAGTTGTCCTGCCAGTGATTAACTCATTAAAAGATTAATCATGAACATTTTAATCTTTTGATATAAACATAAGATGAAAATTTGTTGTATAAATCGTTGTAACACACTGGTGTCGGCCATTATTCAAAATGTTTAATACAATGAATTATGCAGGTAAATATAGCAGCTAATCAAATCTCCATCTTTGACTTAATGTCATTTCCTGTTACATTTTCAGATAACTGAATTATGCAAACCTGGCAAACCTGGATAATTATTATGAGAGAAATAAAATACAGTTATTCATTTGGACTAAACTATAACAAGATTAATAAAAAAAAAAATCATGTTTTATAGGTATCAATTTTTAGAGTGGAAGGTTATATACATTATGTGTGTTTGTATGTATGTGTATGAGTTGTCTGAATGGTTTCACTACTAGTTTAAGAAATGATTTTTTAACAGGTGGTTTGTTCATTAACTATGAAAATGGAAAATAAAAAGATTTACAACAAATTTAATAAATTTTATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07524	Bromo_TP	Bromodomain associated	Domain	Interproscan
PF10406	TAF8_C	Transcription factor TFIID complex subunit 8 C-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006565	Domain	Bromodomain associated domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR019473	Domain	Transcription factor TFIID, subunit 8, C-terminal	Interproscan
IPR037818	Family	Transcription initiation factor TFIID subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46469	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf99_30.32 global RNA-seq network